RNA–Protein interactions for RNA: ENST00000485962.5

SGSM3-213, Transcript of small G protein signaling modulator 3, humanhuman

TSL 5

Gene SGSM3, Length 2,973 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SGSM3-213ENST00000485962 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP14.08□□□□□ -0.162e-9■□□□□ 10.5
SGSM3-213ENST00000485962 RBM15Q96T37 977 aaKnown RBP eCLIP13.03□□□□□ -0.322e-9■■□□□ 14.5
SGSM3-213ENST00000485962 WDR43Q15061 677 aaKnown RBP eCLIP16.2■□□□□ 0.185e-9■■■■■ 55.5
SGSM3-213ENST00000485962 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP9.32□□□□□ -0.927e-9■■□□□ 13.3
SGSM3-213ENST00000485962 SF3B4Q15427 424 aaKnown RBP eCLIP12.19□□□□□ -0.461e-8■■■■■ 33.5
SGSM3-213ENST00000485962 LSM11P83369 360 aaKnown RBP eCLIP11.61□□□□□ -0.552e-8■■■□□ 14.9
SGSM3-213ENST00000485962 DDX3XO00571 662 aaKnown RBP eCLIP13.37□□□□□ -0.276e-8■■■■■ 35.7
SGSM3-213ENST00000485962 PABPC4Q13310 644 aaKnown RBP eCLIP13.47□□□□□ -0.256e-8■■■■■ 34.2
SGSM3-213ENST00000485962 ZNF622Q969S3 477 aaKnown RBP eCLIP14.82□□□□□ -0.041e-7■■□□□ 13.8
SGSM3-213ENST00000485962 SF3A3Q12874 501 aaKnown RBP eCLIP13.23□□□□□ -0.292e-7■■■□□ 19.1
SGSM3-213ENST00000485962 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP13.35□□□□□ -0.272e-7■■■■■ 64.2
SGSM3-213ENST00000485962 BUD13Q9BRD0 619 aaKnown RBP eCLIP13.38□□□□□ -0.272e-7■■■■■ 27.5
SGSM3-213ENST00000485962 DDX6P26196 483 aaKnown RBP eCLIP11.61□□□□□ -0.553e-7■■■□□ 16.7
SGSM3-213ENST00000485962 XRCC6P12956 609 aaKnown RBP eCLIP15.29■□□□□ 0.044e-7■■■□□ 15.8
SGSM3-213ENST00000485962 SMNDC1O75940 238 aaKnown RBP eCLIP12.77□□□□□ -0.365e-7■■■■■ 28.1
SGSM3-213ENST00000485962 PCBP1Q15365 356 aaKnown RBP eCLIP12.44□□□□□ -0.426e-7■■■■□ 21.8
SGSM3-213ENST00000485962 AQRO60306 1485 aaKnown RBP eCLIP17.49■□□□□ 0.396e-7■■■■□ 20.4
SGSM3-213ENST00000485962 GTF2F1P35269 517 aaKnown RBP eCLIP14.42□□□□□ -0.17e-7■■■■□ 25.3
SGSM3-213ENST00000485962 PPIGQ13427 754 aaKnown RBP eCLIP11.82□□□□□ -0.527e-7■■■■□ 21.2
SGSM3-213ENST00000485962 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP11.88□□□□□ -0.518e-7■■■□□ 14.6
SGSM3-213ENST00000485962 DDX24Q9GZR7 859 aaKnown RBP eCLIP14.25□□□□□ -0.139e-7■■■□□ 17.1
SGSM3-213ENST00000485962 EFTUD2Q15029 972 aaKnown RBP eCLIP12.92□□□□□ -0.349e-7■■■■■ 37.9
SGSM3-213ENST00000485962 SF3B1O75533 1304 aaKnown RBP eCLIP12.53□□□□□ -0.41e-6■■■■■ 145.3
SGSM3-213ENST00000485962 RBFOX2O43251 390 aaKnown RBP eCLIP10.2□□□□□ -0.781e-6■■■■□ 22.4
SGSM3-213ENST00000485962 UTP3Q9NQZ2 479 aaKnown RBP eCLIP13.79□□□□□ -0.22e-6■■■■■ 96.4
SGSM3-213ENST00000485962 XRN2Q9H0D6 950 aaKnown RBP eCLIP12.09□□□□□ -0.473e-6■■■■□ 19.8
SGSM3-213ENST00000485962 DDX55Q8NHQ9 600 aaKnown RBP eCLIP12.7□□□□□ -0.383e-6■■□□□ 12
SGSM3-213ENST00000485962 HNRNPMP52272 730 aaKnown RBP eCLIP16.63■□□□□ 0.253e-6■■■■□ 21.8
SGSM3-213ENST00000485962 NOLC1Q14978 699 aaKnown RBP eCLIP14.58□□□□□ -0.083e-6■□□□□ 8.5
Retrieved 29 of 29 RNA–protein pairs in 7.5 ms