RNA–Protein interactions for RNA: ENST00000485962.5

SGSM3-213, Transcript of small G protein signaling modulator 3, human

TSL 5

Gene SGSM3, Length 2,973 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SGSM3-213	ENST00000485962	SF3B1	O75533	1304 aa	Known RBP eCLIP	12.53	□□□□□ -0.4	1e-6	■■■■■ 145.3
SGSM3-213	ENST00000485962	UTP3	Q9NQZ2	479 aa	Known RBP eCLIP	13.79	□□□□□ -0.2	2e-6	■■■■■ 96.4
SGSM3-213	ENST00000485962	DGCR8	Q8WYQ5	773 aa	Known RBP eCLIP	13.35	□□□□□ -0.27	2e-7	■■■■■ 64.2
SGSM3-213	ENST00000485962	WDR43	Q15061	677 aa	Known RBP eCLIP	16.2	■□□□□ 0.18	5e-9	■■■■■ 55.5
SGSM3-213	ENST00000485962	EFTUD2	Q15029	972 aa	Known RBP eCLIP	12.92	□□□□□ -0.34	9e-7	■■■■■ 37.9
SGSM3-213	ENST00000485962	DDX3X	O00571	662 aa	Known RBP eCLIP	13.37	□□□□□ -0.27	6e-8	■■■■■ 35.7
SGSM3-213	ENST00000485962	PABPC4	Q13310	644 aa	Known RBP eCLIP	13.47	□□□□□ -0.25	6e-8	■■■■■ 34.2
SGSM3-213	ENST00000485962	SF3B4	Q15427	424 aa	Known RBP eCLIP	12.19	□□□□□ -0.46	1e-8	■■■■■ 33.5
SGSM3-213	ENST00000485962	SMNDC1	O75940	238 aa	Known RBP eCLIP	12.77	□□□□□ -0.36	5e-7	■■■■■ 28.1
SGSM3-213	ENST00000485962	BUD13	Q9BRD0	619 aa	Known RBP eCLIP	13.38	□□□□□ -0.27	2e-7	■■■■■ 27.5
SGSM3-213	ENST00000485962	GTF2F1	P35269	517 aa	Known RBP eCLIP	14.42	□□□□□ -0.1	7e-7	■■■■□ 25.3
SGSM3-213	ENST00000485962	RBFOX2	O43251	390 aa	Known RBP eCLIP	10.2	□□□□□ -0.78	1e-6	■■■■□ 22.4
SGSM3-213	ENST00000485962	PCBP1	Q15365	356 aa	Known RBP eCLIP	12.44	□□□□□ -0.42	6e-7	■■■■□ 21.8
SGSM3-213	ENST00000485962	HNRNPM	P52272	730 aa	Known RBP eCLIP	16.63	■□□□□ 0.25	3e-6	■■■■□ 21.8
SGSM3-213	ENST00000485962	PPIG	Q13427	754 aa	Known RBP eCLIP	11.82	□□□□□ -0.52	7e-7	■■■■□ 21.2
SGSM3-213	ENST00000485962	AQR	O60306	1485 aa	Known RBP eCLIP	17.49	■□□□□ 0.39	6e-7	■■■■□ 20.4
SGSM3-213	ENST00000485962	XRN2	Q9H0D6	950 aa	Known RBP eCLIP	12.09	□□□□□ -0.47	3e-6	■■■■□ 19.8
SGSM3-213	ENST00000485962	SF3A3	Q12874	501 aa	Known RBP eCLIP	13.23	□□□□□ -0.29	2e-7	■■■□□ 19.1
SGSM3-213	ENST00000485962	DDX24	Q9GZR7	859 aa	Known RBP eCLIP	14.25	□□□□□ -0.13	9e-7	■■■□□ 17.1
SGSM3-213	ENST00000485962	DDX6	P26196	483 aa	Known RBP eCLIP	11.61	□□□□□ -0.55	3e-7	■■■□□ 16.7
SGSM3-213	ENST00000485962	XRCC6	P12956	609 aa	Known RBP eCLIP	15.29	■□□□□ 0.04	4e-7	■■■□□ 15.8
SGSM3-213	ENST00000485962	LSM11	P83369	360 aa	Known RBP eCLIP	11.61	□□□□□ -0.55	2e-8	■■■□□ 14.9
SGSM3-213	ENST00000485962	AKAP8L	Q9ULX6	646 aa	Known RBP eCLIP	11.88	□□□□□ -0.51	8e-7	■■■□□ 14.6
SGSM3-213	ENST00000485962	RBM15	Q96T37	977 aa	Known RBP eCLIP	13.03	□□□□□ -0.32	2e-9	■■□□□ 14.5
SGSM3-213	ENST00000485962	ZNF622	Q969S3	477 aa	Known RBP eCLIP	14.82	□□□□□ -0.04	1e-7	■■□□□ 13.8
SGSM3-213	ENST00000485962	PRPF8	Q6P2Q9	2335 aa	Known RBP eCLIP	9.32	□□□□□ -0.92	7e-9	■■□□□ 13.3
SGSM3-213	ENST00000485962	DDX55	Q8NHQ9	600 aa	Known RBP eCLIP	12.7	□□□□□ -0.38	3e-6	■■□□□ 12
SGSM3-213	ENST00000485962	UCHL5	Q9Y5K5	329 aa	Known RBP eCLIP	14.08	□□□□□ -0.16	2e-9	■□□□□ 10.5
SGSM3-213	ENST00000485962	NOLC1	Q14978	699 aa	Known RBP eCLIP	14.58	□□□□□ -0.08	3e-6	■□□□□ 8.5

Retrieved 29 of 29 RNA–protein pairs in 57.2 ms