RNA–Protein interactions for RNA: ENST00000485833.1

SMARCC1-207, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1, humanhuman

TSL 5

Gene SMARCC1, Length 412 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCC1-207ENST00000485833 AEBP2Q6ZN18 517 aaPredicted RBP27.74■■■□□ 2.03
SMARCC1-207ENST00000485833 CHIC1Q5VXU3 224 aa26.93■■□□□ 1.9
SMARCC1-207ENST00000485833 PHF23Q9BUL5 403 aaPredicted RBP23.64■■□□□ 1.37
SMARCC1-207ENST00000485833 SENP3Q9H4L4 574 aaPredicted RBP23.6■■□□□ 1.37
SMARCC1-207ENST00000485833 FOXD1Q16676 465 aa21.9■■□□□ 1.1
SMARCC1-207ENST00000485833 PLPPR3Q6T4P5 718 aa21.79■■□□□ 1.08
SMARCC1-207ENST00000485833 PPP6R1Q9UPN7 881 aa20.91■□□□□ 0.94
SMARCC1-207ENST00000485833 ADRA2BP18089 450 aa20.88■□□□□ 0.93
SMARCC1-207ENST00000485833 PIAS4Q8N2W9 510 aaPredicted RBP20.62■□□□□ 0.89
SMARCC1-207ENST00000485833 MSH5O43196 834 aa20.3■□□□□ 0.84
SMARCC1-207ENST00000485833 PPP4R3CPQ6ZMV5 832 aa19.16■□□□□ 0.66
SMARCC1-207ENST00000485833 SCAF1Q9H7N4 1312 aaKnown RBP19.13■□□□□ 0.65
SMARCC1-207ENST00000485833 MAPK8IP2Q13387 824 aaPredicted RBP18.99■□□□□ 0.63
SMARCC1-207ENST00000485833 POTEDQ86YR6 584 aa18.8■□□□□ 0.6
SMARCC1-207ENST00000485833 DMRT2Q9Y5R5 561 aa18.8■□□□□ 0.6
SMARCC1-207ENST00000485833 CNKSR2Q8WXI2 1034 aa18.68■□□□□ 0.58
SMARCC1-207ENST00000485833 NCBP3Q53F19 620 aaKnown RBP18.61■□□□□ 0.57
SMARCC1-207ENST00000485833 KCNA4P22459 653 aa18.49■□□□□ 0.55
SMARCC1-207ENST00000485833 RNF216Q9NWF9 866 aaPredicted RBP18.36■□□□□ 0.53
SMARCC1-207ENST00000485833 HOXD11P31277 338 aaPredicted RBP18.34■□□□□ 0.53
SMARCC1-207ENST00000485833 NPM3O75607 178 aaKnown RBP18.33■□□□□ 0.52
SMARCC1-207ENST00000485833 DCAF8L1A6NGE4 600 aa17.98■□□□□ 0.47
SMARCC1-207ENST00000485833 DNAJC5BQ9UF47 199 aa17.86■□□□□ 0.45
SMARCC1-207ENST00000485833 SLC4A1APQ9BWU0 796 aaKnown RBP17.58■□□□□ 0.4
SMARCC1-207ENST00000485833 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.46■□□□□ 0.394e-8■■■■■ 29.5
SMARCC1-207ENST00000485833 RNF39Q9H2S5 420 aa17.36■□□□□ 0.37
SMARCC1-207ENST00000485833 SLC4A2P04920 1241 aa17.35■□□□□ 0.37
SMARCC1-207ENST00000485833 U3KPZ7 1027 aaPredicted RBP17.17■□□□□ 0.34
SMARCC1-207ENST00000485833 C1QBPQ07021 282 aaKnown RBP17.15■□□□□ 0.34
SMARCC1-207ENST00000485833 FOXD4L1Q9NU39 408 aa17.1■□□□□ 0.33
SMARCC1-207ENST00000485833 CACNB1Q02641 598 aaPredicted RBP17.04■□□□□ 0.32
SMARCC1-207ENST00000485833 ZBTB22O15209 634 aa17.01■□□□□ 0.31
SMARCC1-207ENST00000485833 MYCNP04198 464 aaPredicted RBP16.96■□□□□ 0.31
SMARCC1-207ENST00000485833 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.91■□□□□ 0.3
SMARCC1-207ENST00000485833 HNRNPUL2Q1KMD3 747 aaKnown RBP16.91■□□□□ 0.3
SMARCC1-207ENST00000485833 EHMT2Q96KQ7 1210 aa16.85■□□□□ 0.29
SMARCC1-207ENST00000485833 SAMD1Q6SPF0 538 aaPredicted RBP16.83■□□□□ 0.28
SMARCC1-207ENST00000485833 APLP2Q06481 763 aa16.78■□□□□ 0.28
SMARCC1-207ENST00000485833 CSRNP3Q8WYN3 585 aa16.75■□□□□ 0.27
SMARCC1-207ENST00000485833 SPINK5Q9NQ38 1064 aaPredicted RBP16.73■□□□□ 0.27
SMARCC1-207ENST00000485833 CAPN15O75808 1086 aa16.68■□□□□ 0.26
SMARCC1-207ENST00000485833 ZNF219Q9P2Y4 722 aaPredicted RBP16.57■□□□□ 0.24
SMARCC1-207ENST00000485833 TRHP20396 242 aaPredicted RBP16.55■□□□□ 0.24
SMARCC1-207ENST00000485833 ATXN8OSP0DMR3 200 aa16.51■□□□□ 0.23
SMARCC1-207ENST00000485833 ATF5Q9Y2D1 282 aaPredicted RBP16.49■□□□□ 0.23
SMARCC1-207ENST00000485833 DSG3P32926 999 aa16.45■□□□□ 0.22
SMARCC1-207ENST00000485833 ABCB7O75027 752 aa16.34■□□□□ 0.21
SMARCC1-207ENST00000485833 POLA2Q14181 598 aa16.23■□□□□ 0.19
SMARCC1-207ENST00000485833 ZBTB12Q9Y330 459 aaPredicted RBP15.99■□□□□ 0.15
SMARCC1-207ENST00000485833 FBLN2P98095 1184 aa15.84■□□□□ 0.13
SMARCC1-207ENST00000485833 MKRN4PQ13434 485 aaPredicted RBP15.78■□□□□ 0.12
SMARCC1-207ENST00000485833 OSCARQ8IYS5 282 aa15.72■□□□□ 0.11
SMARCC1-207ENST00000485833 RBM42Q9BTD8 480 aaKnown RBP15.71■□□□□ 0.11
SMARCC1-207ENST00000485833 SPDYE2BA6NHP3 402 aa15.54■□□□□ 0.08
SMARCC1-207ENST00000485833 SPDYE6P0CI01 402 aa15.54■□□□□ 0.08
SMARCC1-207ENST00000485833 SPDYE2Q495Y8 402 aa15.54■□□□□ 0.08
SMARCC1-207ENST00000485833 AKT1S1Q96B36 256 aa15.46■□□□□ 0.07
SMARCC1-207ENST00000485833 ZNF692Q9BU19 519 aaPredicted RBP15.42■□□□□ 0.06
SMARCC1-207ENST00000485833 SSUH2Q9Y2M2 353 aa15.4■□□□□ 0.06
SMARCC1-207ENST00000485833 SPDYE4A6NLX3 237 aa15.34■□□□□ 0.05
SMARCC1-207ENST00000485833 REM2Q8IYK8 340 aaPredicted RBP15.3■□□□□ 0.04
SMARCC1-207ENST00000485833 PABPN1Q86U42 306 aaKnown RBP eCLIP15.22■□□□□ 0.03
SMARCC1-207ENST00000485833 FKBP8Q14318 412 aa15.17■□□□□ 0.02
SMARCC1-207ENST00000485833 PITPNM1O00562 1244 aa15.14■□□□□ 0.01
SMARCC1-207ENST00000485833 SPDYE1Q8NFV5 336 aaPredicted RBP15.12■□□□□ 0.01
SMARCC1-207ENST00000485833 CHRDL2Q6WN34 429 aa15.11■□□□□ 0.01
SMARCC1-207ENST00000485833 PROM2Q8N271 834 aa15.07■□□□□ 0
SMARCC1-207ENST00000485833 CLEC11AQ9Y240 323 aa15.04■□□□□ -0
SMARCC1-207ENST00000485833 STAG3Q9UJ98 1225 aa14.94□□□□□ -0.02
SMARCC1-207ENST00000485833 PRR29P0C7W0 189 aa14.89□□□□□ -0.03
SMARCC1-207ENST00000485833 FXR2P51116 673 aaKnown RBP eCLIP14.89□□□□□ -0.036e-10■■□□□ 11.5
SMARCC1-207ENST00000485833 PIP4P2Q8N4L2 257 aa14.87□□□□□ -0.03
SMARCC1-207ENST00000485833 POTEHQ6S545 545 aa14.86□□□□□ -0.03
SMARCC1-207ENST00000485833 PRKAR2AP13861 404 aaKnown RBP14.74□□□□□ -0.05
SMARCC1-207ENST00000485833 CHADLQ6NUI6 762 aa14.69□□□□□ -0.06
SMARCC1-207ENST00000485833 FBXO3Q9UK99 471 aa14.69□□□□□ -0.06
SMARCC1-207ENST00000485833 CREBZFQ9NS37 354 aa14.66□□□□□ -0.06
SMARCC1-207ENST00000485833 FARP1Q9Y4F1 1045 aaPredicted RBP14.55□□□□□ -0.08
SMARCC1-207ENST00000485833 MIER1Q8N108 512 aa14.54□□□□□ -0.08
SMARCC1-207ENST00000485833 PLEKHG5O94827 1062 aa14.52□□□□□ -0.09
SMARCC1-207ENST00000485833 PLCD3Q8N3E9 789 aa14.52□□□□□ -0.09
SMARCC1-207ENST00000485833 VASPP50552 380 aaPredicted RBP14.5□□□□□ -0.09
SMARCC1-207ENST00000485833 MNX1P50219 401 aaPredicted RBP14.48□□□□□ -0.09
SMARCC1-207ENST00000485833 HAX1O00165 279 aa14.43□□□□□ -0.1
SMARCC1-207ENST00000485833 NPM1P06748 294 aaKnown RBP eCLIP14.41□□□□□ -0.1
SMARCC1-207ENST00000485833 ZBTB47Q9UFB7 747 aaPredicted RBP14.4□□□□□ -0.1
SMARCC1-207ENST00000485833 C19orf67A6NJJ6 358 aa14.39□□□□□ -0.11
SMARCC1-207ENST00000485833 CD44P16070 742 aaKnown RBP14.32□□□□□ -0.12
SMARCC1-207ENST00000485833 EVX2Q03828 476 aa14.28□□□□□ -0.12
SMARCC1-207ENST00000485833 KLHL34Q8N239 644 aa14.27□□□□□ -0.13
SMARCC1-207ENST00000485833 IFNLR1Q8IU57 520 aaPredicted RBP14.26□□□□□ -0.13
SMARCC1-207ENST00000485833 PAK3O75914 559 aaPredicted RBP14.23□□□□□ -0.13
SMARCC1-207ENST00000485833 NUBP1P53384 320 aa14.21□□□□□ -0.13
SMARCC1-207ENST00000485833 SP7Q8TDD2 431 aaPredicted RBP14.21□□□□□ -0.13
SMARCC1-207ENST00000485833 ZRANB1Q9UGI0 708 aa14.21□□□□□ -0.13
SMARCC1-207ENST00000485833 RASEFQ8IZ41 740 aa14.19□□□□□ -0.14
SMARCC1-207ENST00000485833 TSPYL2Q9H2G4 693 aaPredicted RBP14.15□□□□□ -0.14
SMARCC1-207ENST00000485833 ZNF579Q8NAF0 562 aaKnown RBP14.14□□□□□ -0.15
SMARCC1-207ENST00000485833 SPOCK2Q92563 424 aa14.14□□□□□ -0.15
SMARCC1-207ENST00000485833 FAM212AQ96EL1 285 aa14.12□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms