RNA–Protein interactions for RNA: ENST00000483871.6

SRSF6-202, Transcript of serine and arginine rich splicing factor 6, humanhuman

TSL 2

Gene SRSF6, Length 1,680 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRSF6-202ENST00000483871 GTF2F1P35269 517 aaKnown RBP eCLIP15□□□□□ -0.011e-11■■■■■ 120.3
SRSF6-202ENST00000483871 RBM15Q96T37 977 aaKnown RBP eCLIP14.31□□□□□ -0.122e-12■■■■■ 71.4
SRSF6-202ENST00000483871 SF3B1O75533 1304 aaKnown RBP eCLIP15.13■□□□□ 0.012e-6■■■■■ 37.8
SRSF6-202ENST00000483871 DDX42Q86XP3 938 aaKnown RBP eCLIP14.64□□□□□ -0.072e-10■■■■■ 33.6
SRSF6-202ENST00000483871 UTP3Q9NQZ2 479 aaKnown RBP eCLIP15.26■□□□□ 0.034e-9■■■■■ 33.1
SRSF6-202ENST00000483871 RBM22Q9NW64 420 aaKnown RBP eCLIP14.37□□□□□ -0.114e-20■■■■■ 32.3
SRSF6-202ENST00000483871 RBFOX2O43251 390 aaKnown RBP eCLIP11.25□□□□□ -0.618e-16■■■■■ 31.8
SRSF6-202ENST00000483871 FTOQ9C0B1 505 aaKnown RBP eCLIP16.08■□□□□ 0.161e-10■■■■■ 31.2
SRSF6-202ENST00000483871 EWSR1Q01844 656 aaKnown RBP eCLIP10.9□□□□□ -0.666e-11■■■■■ 31
SRSF6-202ENST00000483871 XRN2Q9H0D6 950 aaKnown RBP eCLIP15.92■□□□□ 0.143e-27■■■■■ 28.8
SRSF6-202ENST00000483871 AQRO60306 1485 aaKnown RBP eCLIP23.69■■□□□ 1.385e-8■■■■■ 28.1
SRSF6-202ENST00000483871 PRPF4O43172 522 aaKnown RBP eCLIP13.68□□□□□ -0.222e-19■■■■■ 27.5
SRSF6-202ENST00000483871 DDX3XO00571 662 aaKnown RBP eCLIP14.94□□□□□ -0.023e-31■■■■□ 26.2
SRSF6-202ENST00000483871 SF3B4Q15427 424 aaKnown RBP eCLIP12.57□□□□□ -0.42e-7■■■■□ 25.9
SRSF6-202ENST00000483871 KHSRPQ92945 711 aaKnown RBP eCLIP14.84□□□□□ -0.031e-20■■■■□ 25.4
SRSF6-202ENST00000483871 NCBP2P52298 156 aaKnown RBP eCLIP13.21□□□□□ -0.38e-8■■■■□ 23.8
SRSF6-202ENST00000483871 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP11.63□□□□□ -0.551e-12■■■■□ 21.2
SRSF6-202ENST00000483871 EFTUD2Q15029 972 aaKnown RBP eCLIP13.99□□□□□ -0.172e-13■■■■□ 19.9
SRSF6-202ENST00000483871 SRSF1Q07955 248 aaKnown RBP eCLIP12.45□□□□□ -0.428e-12■■■□□ 18.3
SRSF6-202ENST00000483871 XPO5Q9HAV4 1204 aaKnown RBP eCLIP16.78■□□□□ 0.285e-8■■■□□ 18.2
SRSF6-202ENST00000483871 PABPN1Q86U42 306 aaKnown RBP eCLIP26.72■■□□□ 1.877e-10■■■□□ 17.9
SRSF6-202ENST00000483871 ZNF800Q2TB10 664 aaPredicted RBP eCLIP12.7□□□□□ -0.385e-6■■■□□ 17.1
SRSF6-202ENST00000483871 SMNDC1O75940 238 aaKnown RBP eCLIP12.5□□□□□ -0.418e-12■■■□□ 16.4
SRSF6-202ENST00000483871 SF3A3Q12874 501 aaKnown RBP eCLIP13.45□□□□□ -0.265e-18■■■□□ 16.3
SRSF6-202ENST00000483871 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP21.92■■□□□ 1.15e-8■■■□□ 15.9
SRSF6-202ENST00000483871 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP12.96□□□□□ -0.341e-21■■■□□ 15.8
SRSF6-202ENST00000483871 PCBP2Q15366 365 aaKnown RBP eCLIP13.63□□□□□ -0.239e-14■■■□□ 15.5
SRSF6-202ENST00000483871 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP14.77□□□□□ -0.055e-36■■■□□ 14.7
SRSF6-202ENST00000483871 CPSF6Q16630 551 aaKnown RBP eCLIP13.55□□□□□ -0.241e-6■■□□□ 14.4
SRSF6-202ENST00000483871 FUBP3Q96I24 572 aaKnown RBP eCLIP14.96□□□□□ -0.014e-14■■□□□ 13.7
SRSF6-202ENST00000483871 TAF15Q92804 592 aaKnown RBP eCLIP11.27□□□□□ -0.62e-6■■□□□ 13.5
SRSF6-202ENST00000483871 PUM1Q14671 1186 aaKnown RBP eCLIP13.49□□□□□ -0.253e-8■■□□□ 13.5
SRSF6-202ENST00000483871 TIA1P31483 386 aaKnown RBP eCLIP13.35□□□□□ -0.273e-53■■□□□ 12.9
SRSF6-202ENST00000483871 U2AF1Q01081 240 aaKnown RBP eCLIP18.89■□□□□ 0.612e-19■■□□□ 12.9
SRSF6-202ENST00000483871 HNRNPUQ00839 825 aaKnown RBP eCLIP18.61■□□□□ 0.573e-10■■□□□ 12.6
SRSF6-202ENST00000483871 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP14.94□□□□□ -0.024e-25■■□□□ 12.6
SRSF6-202ENST00000483871 GRWD1Q9BQ67 446 aaKnown RBP eCLIP21.09■□□□□ 0.976e-11■■□□□ 12.6
SRSF6-202ENST00000483871 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP14.72□□□□□ -0.056e-18■■□□□ 12.5
SRSF6-202ENST00000483871 NKRFO15226 690 aaKnown RBP eCLIP15.92■□□□□ 0.147e-7■■□□□ 12.4
SRSF6-202ENST00000483871 U2AF2P26368 475 aaKnown RBP eCLIP16.15■□□□□ 0.182e-25■■□□□ 12.2
SRSF6-202ENST00000483871 ZRANB2O95218 330 aaKnown RBP eCLIP14.57□□□□□ -0.084e-10■■□□□ 12.1
SRSF6-202ENST00000483871 BUD13Q9BRD0 619 aaKnown RBP eCLIP15.42■□□□□ 0.066e-12■■□□□ 12
SRSF6-202ENST00000483871 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP21.5■■□□□ 1.032e-17■■□□□ 11.8
SRSF6-202ENST00000483871 FUSP35637 526 aaKnown RBP eCLIP9.28□□□□□ -0.924e-10■■□□□ 11.7
SRSF6-202ENST00000483871 GPKOWQ92917 476 aaPredicted RBP eCLIP16.34■□□□□ 0.213e-8■■□□□ 11.5
SRSF6-202ENST00000483871 FXR2P51116 673 aaKnown RBP eCLIP15.92■□□□□ 0.142e-11■□□□□ 11.2
SRSF6-202ENST00000483871 RBM5P52756 815 aaKnown RBP eCLIP17.07■□□□□ 0.323e-7■□□□□ 11.2
SRSF6-202ENST00000483871 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP15.08■□□□□ 02e-6■□□□□ 11
SRSF6-202ENST00000483871 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP14.02□□□□□ -0.169e-40■□□□□ 11
SRSF6-202ENST00000483871 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP18.67■□□□□ 0.581e-19■□□□□ 10.9
SRSF6-202ENST00000483871 SRSF7Q16629 238 aaKnown RBP eCLIP11.55□□□□□ -0.563e-19■□□□□ 10.9
SRSF6-202ENST00000483871 DDX51Q8N8A6 666 aaKnown RBP eCLIP14.46□□□□□ -0.17e-11■□□□□ 10.7
SRSF6-202ENST00000483871 PPIGQ13427 754 aaKnown RBP eCLIP15.43■□□□□ 0.063e-16■□□□□ 10.7
SRSF6-202ENST00000483871 DDX24Q9GZR7 859 aaKnown RBP eCLIP17.08■□□□□ 0.324e-14■□□□□ 10.1
SRSF6-202ENST00000483871 HNRNPA1P09651 372 aaKnown RBP eCLIP14.86□□□□□ -0.034e-7■□□□□ 9.8
SRSF6-202ENST00000483871 SRSF9Q13242 221 aaKnown RBP eCLIP8.86□□□□□ -0.991e-15■□□□□ 9.6
SRSF6-202ENST00000483871 SDAD1Q9NVU7 687 aaKnown RBP eCLIP13.07□□□□□ -0.321e-6■□□□□ 9.5
SRSF6-202ENST00000483871 TIAL1Q01085 375 aaKnown RBP eCLIP13.91□□□□□ -0.181e-23■□□□□ 9.4
SRSF6-202ENST00000483871 TRA2AQ13595 282 aaKnown RBP eCLIP13.52□□□□□ -0.251e-8■□□□□ 9.1
SRSF6-202ENST00000483871 PABPC4Q13310 644 aaKnown RBP eCLIP16.4■□□□□ 0.224e-8■□□□□ 8.4
SRSF6-202ENST00000483871 HNRNPCP07910 306 aaKnown RBP eCLIP10.73□□□□□ -0.691e-6■□□□□ 8.3
SRSF6-202ENST00000483871 DDX6P26196 483 aaKnown RBP eCLIP14.72□□□□□ -0.052e-6■□□□□ 8.3
SRSF6-202ENST00000483871 QKIQ96PU8 341 aaKnown RBP eCLIP14.39□□□□□ -0.113e-15■□□□□ 8.1
SRSF6-202ENST00000483871 FKBP4Q02790 459 aaKnown RBP eCLIP17.37■□□□□ 0.375e-14■□□□□ 8
Retrieved 64 of 64 RNA–protein pairs in 22.4 ms