RNA–Protein interactions for RNA: ENST00000483407.1

CSDE1-207, Transcript of cold shock domain containing E1, humanhuman

TSL 2

Gene CSDE1, Length 741 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-207ENST00000483407 AEBP2Q6ZN18 517 aaPredicted RBP19.35■□□□□ 0.69
CSDE1-207ENST00000483407 CHIC1Q5VXU3 224 aa18.23■□□□□ 0.51
CSDE1-207ENST00000483407 SENP3Q9H4L4 574 aaPredicted RBP16.76■□□□□ 0.27
CSDE1-207ENST00000483407 PHF23Q9BUL5 403 aaPredicted RBP16.4■□□□□ 0.22
CSDE1-207ENST00000483407 POTEDQ86YR6 584 aa15.71■□□□□ 0.11
CSDE1-207ENST00000483407 FOXD1Q16676 465 aa15.61■□□□□ 0.09
CSDE1-207ENST00000483407 MSH5O43196 834 aa15□□□□□ -0.01
CSDE1-207ENST00000483407 PLPPR3Q6T4P5 718 aa14.72□□□□□ -0.05
CSDE1-207ENST00000483407 NISCHQ9Y2I1 1504 aa14.62□□□□□ -0.07
CSDE1-207ENST00000483407 PIAS4Q8N2W9 510 aaPredicted RBP14.42□□□□□ -0.1
CSDE1-207ENST00000483407 PPP6R1Q9UPN7 881 aa14.02□□□□□ -0.17
CSDE1-207ENST00000483407 ADRA2BP18089 450 aa13.94□□□□□ -0.18
CSDE1-207ENST00000483407 KCNA4P22459 653 aa13.23□□□□□ -0.29
CSDE1-207ENST00000483407 CACNB1Q02641 598 aaPredicted RBP13.23□□□□□ -0.29
CSDE1-207ENST00000483407 ABCC9O60706 1549 aa13.23□□□□□ -0.29
CSDE1-207ENST00000483407 DMRT2Q9Y5R5 561 aa13.16□□□□□ -0.3
CSDE1-207ENST00000483407 CCDC180Q9P1Z9 1646 aa13.1□□□□□ -0.31
CSDE1-207ENST00000483407 PPP4R3CPQ6ZMV5 832 aa13.02□□□□□ -0.33
CSDE1-207ENST00000483407 MAPK8IP2Q13387 824 aaPredicted RBP12.99□□□□□ -0.33
CSDE1-207ENST00000483407 SCAF1Q9H7N4 1312 aaKnown RBP12.95□□□□□ -0.34
CSDE1-207ENST00000483407 NCBP3Q53F19 620 aaKnown RBP12.81□□□□□ -0.36
CSDE1-207ENST00000483407 EHMT2Q96KQ7 1210 aa12.81□□□□□ -0.36
CSDE1-207ENST00000483407 RNF39Q9H2S5 420 aa12.68□□□□□ -0.38
CSDE1-207ENST00000483407 SLC4A1APQ9BWU0 796 aaKnown RBP12.67□□□□□ -0.38
CSDE1-207ENST00000483407 NPM3O75607 178 aaKnown RBP12.63□□□□□ -0.39
CSDE1-207ENST00000483407 DCAF8L1A6NGE4 600 aa12.57□□□□□ -0.4
CSDE1-207ENST00000483407 CNKSR2Q8WXI2 1034 aa12.57□□□□□ -0.4
CSDE1-207ENST00000483407 RB1CC1Q8TDY2 1594 aa12.56□□□□□ -0.4
CSDE1-207ENST00000483407 C1QBPQ07021 282 aaKnown RBP12.53□□□□□ -0.4
CSDE1-207ENST00000483407 DNAJC5BQ9UF47 199 aa12.53□□□□□ -0.4
CSDE1-207ENST00000483407 CSRNP3Q8WYN3 585 aa12.51□□□□□ -0.41
CSDE1-207ENST00000483407 NACADO15069 1562 aa12.46□□□□□ -0.42
CSDE1-207ENST00000483407 DCAF8L2P0C7V8 631 aa12.45□□□□□ -0.42
CSDE1-207ENST00000483407 HOXD11P31277 338 aaPredicted RBP12.41□□□□□ -0.42
CSDE1-207ENST00000483407 PABPN1Q86U42 306 aaKnown RBP eCLIP12.33□□□□□ -0.44
CSDE1-207ENST00000483407 MYO15BQ96JP2 1530 aa12.27□□□□□ -0.44
CSDE1-207ENST00000483407 RNF216Q9NWF9 866 aaPredicted RBP12.22□□□□□ -0.45
CSDE1-207ENST00000483407 POTEHQ6S545 545 aa12.21□□□□□ -0.45
CSDE1-207ENST00000483407 ZBTB22O15209 634 aa12.2□□□□□ -0.46
CSDE1-207ENST00000483407 BICRAQ9NZM4 1560 aa12.14□□□□□ -0.47
CSDE1-207ENST00000483407 UNC13AQ9UPW8 1703 aa12.14□□□□□ -0.47
CSDE1-207ENST00000483407 ZCCHC6Q5VYS8 1495 aaKnown RBP12.1□□□□□ -0.47
CSDE1-207ENST00000483407 DCAF1Q9Y4B6 1507 aa12.07□□□□□ -0.48
CSDE1-207ENST00000483407 FOXD4L1Q9NU39 408 aa12.05□□□□□ -0.48
CSDE1-207ENST00000483407 SHROOM4Q9ULL8 1493 aa12.05□□□□□ -0.48
CSDE1-207ENST00000483407 DNAJC5Q9H3Z4 198 aa11.98□□□□□ -0.49
CSDE1-207ENST00000483407 SCRIBQ14160 1630 aa11.95□□□□□ -0.5
CSDE1-207ENST00000483407 CECR2Q9BXF3 1484 aa11.94□□□□□ -0.5
CSDE1-207ENST00000483407 CC2D2AQ9P2K1 1620 aa11.91□□□□□ -0.5
CSDE1-207ENST00000483407 EIF4G1Q04637 1599 aaKnown RBP11.88□□□□□ -0.51
CSDE1-207ENST00000483407 SLC4A2P04920 1241 aa11.83□□□□□ -0.52
CSDE1-207ENST00000483407 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.81□□□□□ -0.52
CSDE1-207ENST00000483407 MYCNP04198 464 aaPredicted RBP11.65□□□□□ -0.54
CSDE1-207ENST00000483407 ATXN8OSP0DMR3 200 aa11.63□□□□□ -0.55
CSDE1-207ENST00000483407 DSG3P32926 999 aa11.62□□□□□ -0.55
CSDE1-207ENST00000483407 NCAPD3P42695 1498 aa11.51□□□□□ -0.57
CSDE1-207ENST00000483407 CAPN15O75808 1086 aa11.5□□□□□ -0.57
CSDE1-207ENST00000483407 ERCC6Q03468 1493 aa11.46□□□□□ -0.57
CSDE1-207ENST00000483407 ATAD2BQ9ULI0 1458 aa11.46□□□□□ -0.57
CSDE1-207ENST00000483407 CUX2O14529 1486 aa11.45□□□□□ -0.58
CSDE1-207ENST00000483407 SMARCA2P51531 1590 aa11.43□□□□□ -0.58
CSDE1-207ENST00000483407 SPINK5Q9NQ38 1064 aaPredicted RBP11.43□□□□□ -0.58
CSDE1-207ENST00000483407 U3KPZ7 1027 aaPredicted RBP11.42□□□□□ -0.58
CSDE1-207ENST00000483407 HMGXB3Q12766 1538 aa11.4□□□□□ -0.58
CSDE1-207ENST00000483407 SMARCA4P51532 1647 aa11.39□□□□□ -0.59
CSDE1-207ENST00000483407 BAZ1AQ9NRL2 1556 aaPredicted RBP11.37□□□□□ -0.59
CSDE1-207ENST00000483407 BAZ1BQ9UIG0 1483 aaKnown RBP11.36□□□□□ -0.59
CSDE1-207ENST00000483407 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.35□□□□□ -0.59
CSDE1-207ENST00000483407 HNRNPUL2Q1KMD3 747 aaKnown RBP11.35□□□□□ -0.59
CSDE1-207ENST00000483407 NESP48681 1621 aa11.32□□□□□ -0.6
CSDE1-207ENST00000483407 SAMD1Q6SPF0 538 aaPredicted RBP11.32□□□□□ -0.6
CSDE1-207ENST00000483407 ATF5Q9Y2D1 282 aaPredicted RBP11.31□□□□□ -0.6
CSDE1-207ENST00000483407 PEG3Q9GZU2 1588 aa11.29□□□□□ -0.6
CSDE1-207ENST00000483407 MROH2BQ7Z745 1585 aa11.25□□□□□ -0.61
CSDE1-207ENST00000483407 LAMC3Q9Y6N6 1575 aa11.24□□□□□ -0.61
CSDE1-207ENST00000483407 FKBP8Q14318 412 aa11.24□□□□□ -0.61
CSDE1-207ENST00000483407 PDS5BQ9NTI5 1447 aa11.24□□□□□ -0.61
CSDE1-207ENST00000483407 APLP2Q06481 763 aa11.23□□□□□ -0.61
CSDE1-207ENST00000483407 RBM42Q9BTD8 480 aaKnown RBP11.2□□□□□ -0.62
CSDE1-207ENST00000483407 THOC2Q8NI27 1593 aaKnown RBP11.2□□□□□ -0.62
CSDE1-207ENST00000483407 ZNF219Q9P2Y4 722 aaPredicted RBP11.19□□□□□ -0.62
CSDE1-207ENST00000483407 CADPSQ9ULU8 1353 aa11.18□□□□□ -0.62
CSDE1-207ENST00000483407 CHRDL2Q6WN34 429 aa11.15□□□□□ -0.62
CSDE1-207ENST00000483407 TRIM41Q8WV44 630 aa11.14□□□□□ -0.63
CSDE1-207ENST00000483407 TRHP20396 242 aaPredicted RBP11.13□□□□□ -0.63
CSDE1-207ENST00000483407 SP7Q8TDD2 431 aaPredicted RBP11.13□□□□□ -0.63
CSDE1-207ENST00000483407 KIF21AQ7Z4S6 1674 aa11.11□□□□□ -0.63
CSDE1-207ENST00000483407 MRC2Q9UBG0 1479 aa11.11□□□□□ -0.63
CSDE1-207ENST00000483407 ABCB7O75027 752 aa11.09□□□□□ -0.63
CSDE1-207ENST00000483407 WIZO95785 1651 aa11.08□□□□□ -0.64
CSDE1-207ENST00000483407 AMER1Q5JTC6 1135 aaPredicted RBP11.07□□□□□ -0.64
CSDE1-207ENST00000483407 CEP164Q9UPV0 1460 aa11.06□□□□□ -0.64
CSDE1-207ENST00000483407 WDR62O43379 1518 aa11.06□□□□□ -0.64
CSDE1-207ENST00000483407 RTN4Q9NQC3 1192 aaKnown RBP11.05□□□□□ -0.64
CSDE1-207ENST00000483407 FANCD2Q9BXW9 1451 aa11.04□□□□□ -0.64
CSDE1-207ENST00000483407 RSF1Q96T23 1441 aaPredicted RBP11.02□□□□□ -0.64
CSDE1-207ENST00000483407 CFTRP13569 1480 aa11.02□□□□□ -0.65
CSDE1-207ENST00000483407 TOP2AP11388 1531 aaKnown RBP10.98□□□□□ -0.65
CSDE1-207ENST00000483407 OSCARQ8IYS5 282 aa10.95□□□□□ -0.66
CSDE1-207ENST00000483407 URB2Q14146 1524 aaKnown RBP10.92□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms