RNA–Protein interactions for RNA: ENST00000482693.1

SF1-215, Transcript of splicing factor 1, humanhuman

TSL 2

Gene SF1, Length 755 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF1-215ENST00000482693 RBM22Q9NW64 420 aaKnown RBP eCLIP16.96■□□□□ 0.312e-13■■■■■ 79.6
SF1-215ENST00000482693 U2AF1Q01081 240 aaKnown RBP eCLIP22.39■■□□□ 1.171e-19■■■■■ 60.2
SF1-215ENST00000482693 U2AF2P26368 475 aaKnown RBP eCLIP19■□□□□ 0.634e-8■■■■■ 44.5
SF1-215ENST00000482693 EFTUD2Q15029 972 aaKnown RBP eCLIP16.23■□□□□ 0.193e-7■■■■■ 44.5
SF1-215ENST00000482693 XRN2Q9H0D6 950 aaKnown RBP eCLIP19.31■□□□□ 0.687e-7■■■■■ 40.1
SF1-215ENST00000482693 AQRO60306 1485 aaKnown RBP eCLIP28.7■■■□□ 2.181e-18■■■■■ 38.5
SF1-215ENST00000482693 NONOQ15233 471 aaKnown RBP eCLIP19.08■□□□□ 0.641e-6■■■■■ 28.9
SF1-215ENST00000482693 UTP3Q9NQZ2 479 aaKnown RBP eCLIP17.9■□□□□ 0.463e-6■■■■■ 28.8
SF1-215ENST00000482693 SF3B4Q15427 424 aaKnown RBP eCLIP15.17■□□□□ 0.022e-8■■■■■ 28
SF1-215ENST00000482693 TIA1P31483 386 aaKnown RBP eCLIP15.69■□□□□ 0.12e-8■■■■□ 24.3
SF1-215ENST00000482693 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP13.92□□□□□ -0.188e-11■■■■□ 23.8
SF1-215ENST00000482693 QKIQ96PU8 341 aaKnown RBP eCLIP16.92■□□□□ 0.36e-44■■■■□ 23
SF1-215ENST00000482693 DDX3XO00571 662 aaKnown RBP eCLIP17.45■□□□□ 0.386e-44■■■■□ 22.7
SF1-215ENST00000482693 KHSRPQ92945 711 aaKnown RBP eCLIP17.6■□□□□ 0.413e-11■■■■□ 21.9
SF1-215ENST00000482693 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP26.44■■□□□ 1.821e-8■■■■□ 19.9
SF1-215ENST00000482693 NKRFO15226 690 aaKnown RBP eCLIP19.17■□□□□ 0.662e-6■■■□□ 17.1
SF1-215ENST00000482693 GRWD1Q9BQ67 446 aaKnown RBP eCLIP25.25■■□□□ 1.631e-12■■■□□ 16.5
SF1-215ENST00000482693 PCBP1Q15365 356 aaKnown RBP eCLIP18.56■□□□□ 0.561e-8■■■□□ 15.5
SF1-215ENST00000482693 ZRANB2O95218 330 aaKnown RBP eCLIP17.08■□□□□ 0.321e-6■■■□□ 14.8
SF1-215ENST00000482693 FXR2P51116 673 aaKnown RBP eCLIP18.81■□□□□ 0.64e-18■■□□□ 13.9
SF1-215ENST00000482693 AATFQ9NY61 560 aaKnown RBP eCLIP20.27■□□□□ 0.843e-6■■□□□ 13.7
SF1-215ENST00000482693 GPKOWQ92917 476 aaPredicted RBP eCLIP19.3■□□□□ 0.683e-7■■□□□ 13
SF1-215ENST00000482693 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP17.58■□□□□ 0.43e-12■■□□□ 12.9
SF1-215ENST00000482693 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP16.28■□□□□ 0.22e-6■■□□□ 12.7
SF1-215ENST00000482693 TAF15Q92804 592 aaKnown RBP eCLIP13.4□□□□□ -0.261e-8■■□□□ 12.7
SF1-215ENST00000482693 ZNF800Q2TB10 664 aaPredicted RBP eCLIP15.29■□□□□ 0.048e-13■■□□□ 12.2
SF1-215ENST00000482693 RBM15Q96T37 977 aaKnown RBP eCLIP16.85■□□□□ 0.294e-9■■□□□ 11.9
SF1-215ENST00000482693 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP17.45■□□□□ 0.386e-6■■□□□ 11.9
SF1-215ENST00000482693 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP15.54■□□□□ 0.082e-9■■□□□ 11.8
SF1-215ENST00000482693 ZNF622Q969S3 477 aaKnown RBP eCLIP21.26■□□□□ 0.997e-15■■□□□ 11.5
SF1-215ENST00000482693 METAP2P50579 478 aaKnown RBP eCLIP19.43■□□□□ 0.72e-8■□□□□ 10.5
SF1-215ENST00000482693 SRSF1Q07955 248 aaKnown RBP eCLIP15.14■□□□□ 0.014e-12■□□□□ 10.5
SF1-215ENST00000482693 DHX30Q7L2E3 1194 aaKnown RBP eCLIP19.48■□□□□ 0.712e-12■□□□□ 10.2
SF1-215ENST00000482693 FUSP35637 526 aaKnown RBP eCLIP10.99□□□□□ -0.655e-13■□□□□ 10.2
SF1-215ENST00000482693 TRA2AQ13595 282 aaKnown RBP eCLIP16.31■□□□□ 0.24e-10■□□□□ 9.6
SF1-215ENST00000482693 FMR1Q06787 632 aaKnown RBP eCLIP20.33■□□□□ 0.851e-11■□□□□ 9.6
SF1-215ENST00000482693 NCBP2P52298 156 aaKnown RBP eCLIP15.55■□□□□ 0.082e-7■□□□□ 9.3
SF1-215ENST00000482693 TIAL1Q01085 375 aaKnown RBP eCLIP16.29■□□□□ 0.21e-7■□□□□ 9.3
SF1-215ENST00000482693 YBX3P16989 372 aaKnown RBP eCLIP21.25■□□□□ 0.991e-8■□□□□ 9
SF1-215ENST00000482693 SRSF7Q16629 238 aaKnown RBP eCLIP13.55□□□□□ -0.246e-7■□□□□ 8.9
SF1-215ENST00000482693 SDAD1Q9NVU7 687 aaKnown RBP eCLIP15.61■□□□□ 0.091e-5■□□□□ 8.8
SF1-215ENST00000482693 HNRNPCP07910 306 aaKnown RBP eCLIP12.6□□□□□ -0.391e-11■□□□□ 8.2
Retrieved 42 of 42 RNA–protein pairs in 13.2 ms