RNA–Protein interactions for RNA: ENST00000482299.1

NDUFA4-204, Transcript of NDUFA4, mitochondrial complex associated, humanhuman

TSL 2

Gene NDUFA4, Length 606 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NDUFA4-204ENST00000482299 AEBP2Q6ZN18 517 aaPredicted RBP24.82■■□□□ 1.56
NDUFA4-204ENST00000482299 CHIC1Q5VXU3 224 aa23.9■■□□□ 1.42
NDUFA4-204ENST00000482299 SENP3Q9H4L4 574 aaPredicted RBP21.29■■□□□ 1
NDUFA4-204ENST00000482299 PHF23Q9BUL5 403 aaPredicted RBP20.97■□□□□ 0.95
NDUFA4-204ENST00000482299 FOXD1Q16676 465 aa19.71■□□□□ 0.75
NDUFA4-204ENST00000482299 PLPPR3Q6T4P5 718 aa19.27■□□□□ 0.68
NDUFA4-204ENST00000482299 PPP6R1Q9UPN7 881 aa18.56■□□□□ 0.56
NDUFA4-204ENST00000482299 ADRA2BP18089 450 aa18.55■□□□□ 0.56
NDUFA4-204ENST00000482299 PIAS4Q8N2W9 510 aaPredicted RBP18.55■□□□□ 0.56
NDUFA4-204ENST00000482299 MSH5O43196 834 aa18.47■□□□□ 0.55
NDUFA4-204ENST00000482299 POTEDQ86YR6 584 aa18.16■□□□□ 0.5
NDUFA4-204ENST00000482299 SCAF1Q9H7N4 1312 aaKnown RBP17.13■□□□□ 0.33
NDUFA4-204ENST00000482299 MAPK8IP2Q13387 824 aaPredicted RBP16.93■□□□□ 0.3
NDUFA4-204ENST00000482299 DMRT2Q9Y5R5 561 aa16.88■□□□□ 0.29
NDUFA4-204ENST00000482299 PPP4R3CPQ6ZMV5 832 aa16.87■□□□□ 0.29
NDUFA4-204ENST00000482299 CNKSR2Q8WXI2 1034 aa16.54■□□□□ 0.24
NDUFA4-204ENST00000482299 NCBP3Q53F19 620 aaKnown RBP16.39■□□□□ 0.21
NDUFA4-204ENST00000482299 HOXD11P31277 338 aaPredicted RBP16.35■□□□□ 0.21
NDUFA4-204ENST00000482299 RNF216Q9NWF9 866 aaPredicted RBP16.32■□□□□ 0.2
NDUFA4-204ENST00000482299 DCAF8L1A6NGE4 600 aa16.19■□□□□ 0.18
NDUFA4-204ENST00000482299 NPM3O75607 178 aaKnown RBP16.04■□□□□ 0.16
NDUFA4-204ENST00000482299 KCNA4P22459 653 aa15.93■□□□□ 0.14
NDUFA4-204ENST00000482299 DNAJC5BQ9UF47 199 aa15.81■□□□□ 0.12
NDUFA4-204ENST00000482299 RNF39Q9H2S5 420 aa15.71■□□□□ 0.11
NDUFA4-204ENST00000482299 CACNB1Q02641 598 aaPredicted RBP15.65■□□□□ 0.1
NDUFA4-204ENST00000482299 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.62■□□□□ 0.09
NDUFA4-204ENST00000482299 C1QBPQ07021 282 aaKnown RBP15.56■□□□□ 0.08
NDUFA4-204ENST00000482299 U3KPZ7 1027 aaPredicted RBP15.25■□□□□ 0.03
NDUFA4-204ENST00000482299 SLC4A2P04920 1241 aa15.22■□□□□ 0.03
NDUFA4-204ENST00000482299 SLC4A1APQ9BWU0 796 aaKnown RBP15.15■□□□□ 0.02
NDUFA4-204ENST00000482299 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.05■□□□□ -0
NDUFA4-204ENST00000482299 HNRNPUL2Q1KMD3 747 aaKnown RBP15.05■□□□□ -0
NDUFA4-204ENST00000482299 APLP2Q06481 763 aa15.03■□□□□ -0
NDUFA4-204ENST00000482299 CAPN15O75808 1086 aa14.97□□□□□ -0.01
NDUFA4-204ENST00000482299 SAMD1Q6SPF0 538 aaPredicted RBP14.94□□□□□ -0.02
NDUFA4-204ENST00000482299 SPINK5Q9NQ38 1064 aaPredicted RBP14.93□□□□□ -0.02
NDUFA4-204ENST00000482299 MYCNP04198 464 aaPredicted RBP14.91□□□□□ -0.02
NDUFA4-204ENST00000482299 FOXD4L1Q9NU39 408 aa14.86□□□□□ -0.03
NDUFA4-204ENST00000482299 ZNF219Q9P2Y4 722 aaPredicted RBP14.82□□□□□ -0.04
NDUFA4-204ENST00000482299 DSG3P32926 999 aa14.78□□□□□ -0.04
NDUFA4-204ENST00000482299 TRHP20396 242 aaPredicted RBP14.77□□□□□ -0.05
NDUFA4-204ENST00000482299 ZBTB22O15209 634 aa14.61□□□□□ -0.07
NDUFA4-204ENST00000482299 ABCB7O75027 752 aa14.6□□□□□ -0.07
NDUFA4-204ENST00000482299 POLA2Q14181 598 aa14.43□□□□□ -0.1
NDUFA4-204ENST00000482299 ATXN8OSP0DMR3 200 aa14.42□□□□□ -0.1
NDUFA4-204ENST00000482299 ATF5Q9Y2D1 282 aaPredicted RBP14.41□□□□□ -0.1
NDUFA4-204ENST00000482299 ZBTB12Q9Y330 459 aaPredicted RBP14.27□□□□□ -0.13
NDUFA4-204ENST00000482299 RBM42Q9BTD8 480 aaKnown RBP14.22□□□□□ -0.13
NDUFA4-204ENST00000482299 CSRNP3Q8WYN3 585 aa14.18□□□□□ -0.14
NDUFA4-204ENST00000482299 EHMT2Q96KQ7 1210 aa14.17□□□□□ -0.14
NDUFA4-204ENST00000482299 POTEHQ6S545 545 aa14.13□□□□□ -0.15
NDUFA4-204ENST00000482299 FBLN2P98095 1184 aa14□□□□□ -0.17
NDUFA4-204ENST00000482299 OSCARQ8IYS5 282 aa13.95□□□□□ -0.18
NDUFA4-204ENST00000482299 AKT1S1Q96B36 256 aa13.89□□□□□ -0.19
NDUFA4-204ENST00000482299 SPDYE2BA6NHP3 402 aa13.8□□□□□ -0.2
NDUFA4-204ENST00000482299 SPDYE6P0CI01 402 aa13.8□□□□□ -0.2
NDUFA4-204ENST00000482299 SPDYE2Q495Y8 402 aa13.8□□□□□ -0.2
NDUFA4-204ENST00000482299 MKRN4PQ13434 485 aaPredicted RBP13.78□□□□□ -0.2
NDUFA4-204ENST00000482299 CHRDL2Q6WN34 429 aa13.73□□□□□ -0.21
NDUFA4-204ENST00000482299 REM2Q8IYK8 340 aaPredicted RBP13.71□□□□□ -0.21
NDUFA4-204ENST00000482299 ZNF692Q9BU19 519 aaPredicted RBP13.64□□□□□ -0.23
NDUFA4-204ENST00000482299 SSUH2Q9Y2M2 353 aa13.59□□□□□ -0.23
NDUFA4-204ENST00000482299 PITPNM1O00562 1244 aa13.56□□□□□ -0.24
NDUFA4-204ENST00000482299 SPDYE1Q8NFV5 336 aaPredicted RBP13.5□□□□□ -0.25
NDUFA4-204ENST00000482299 PABPN1Q86U42 306 aaKnown RBP eCLIP13.43□□□□□ -0.26
NDUFA4-204ENST00000482299 PIP4P2Q8N4L2 257 aa13.43□□□□□ -0.26
NDUFA4-204ENST00000482299 CLEC11AQ9Y240 323 aa13.42□□□□□ -0.26
NDUFA4-204ENST00000482299 FXR2P51116 673 aaKnown RBP eCLIP13.4□□□□□ -0.26
NDUFA4-204ENST00000482299 SPDYE4A6NLX3 237 aa13.34□□□□□ -0.27
NDUFA4-204ENST00000482299 PRR29P0C7W0 189 aa13.26□□□□□ -0.29
NDUFA4-204ENST00000482299 PRKAR2AP13861 404 aaKnown RBP13.23□□□□□ -0.29
NDUFA4-204ENST00000482299 STAG3Q9UJ98 1225 aa13.2□□□□□ -0.3
NDUFA4-204ENST00000482299 HAX1O00165 279 aa13.15□□□□□ -0.3
NDUFA4-204ENST00000482299 CHADLQ6NUI6 762 aa13.08□□□□□ -0.32
NDUFA4-204ENST00000482299 SP7Q8TDD2 431 aaPredicted RBP13.07□□□□□ -0.32
NDUFA4-204ENST00000482299 PROM2Q8N271 834 aa13.02□□□□□ -0.33
NDUFA4-204ENST00000482299 FARP1Q9Y4F1 1045 aaPredicted RBP12.97□□□□□ -0.33
NDUFA4-204ENST00000482299 C19orf67A6NJJ6 358 aa12.96□□□□□ -0.33
NDUFA4-204ENST00000482299 CREBZFQ9NS37 354 aa12.92□□□□□ -0.34
NDUFA4-204ENST00000482299 FKBP8Q14318 412 aa12.9□□□□□ -0.34
NDUFA4-204ENST00000482299 EVX2Q03828 476 aa12.88□□□□□ -0.35
NDUFA4-204ENST00000482299 CD44P16070 742 aaKnown RBP12.84□□□□□ -0.35
NDUFA4-204ENST00000482299 NPM1P06748 294 aaKnown RBP eCLIP12.8□□□□□ -0.36
NDUFA4-204ENST00000482299 PLEKHG5O94827 1062 aa12.79□□□□□ -0.36
NDUFA4-204ENST00000482299 PAK3O75914 559 aaPredicted RBP12.74□□□□□ -0.37
NDUFA4-204ENST00000482299 CLCN6P51797 869 aa12.72□□□□□ -0.37
NDUFA4-204ENST00000482299 MNX1P50219 401 aaPredicted RBP12.71□□□□□ -0.37
NDUFA4-204ENST00000482299 MIER1Q8N108 512 aa12.71□□□□□ -0.37
NDUFA4-204ENST00000482299 GABBR2O75899 941 aa12.69□□□□□ -0.38
NDUFA4-204ENST00000482299 ZRANB1Q9UGI0 708 aa12.69□□□□□ -0.38
NDUFA4-204ENST00000482299 PLCD3Q8N3E9 789 aa12.66□□□□□ -0.38
NDUFA4-204ENST00000482299 FBXO3Q9UK99 471 aa12.66□□□□□ -0.38
NDUFA4-204ENST00000482299 ZNF579Q8NAF0 562 aaKnown RBP12.65□□□□□ -0.38
NDUFA4-204ENST00000482299 ZBTB47Q9UFB7 747 aaPredicted RBP12.62□□□□□ -0.39
NDUFA4-204ENST00000482299 TSPYL2Q9H2G4 693 aaPredicted RBP12.5□□□□□ -0.41
NDUFA4-204ENST00000482299 PHF12Q96QT6 1004 aa12.49□□□□□ -0.41
NDUFA4-204ENST00000482299 DCBLD2Q96PD2 775 aa12.48□□□□□ -0.41
NDUFA4-204ENST00000482299 GALR2O43603 387 aaPredicted RBP12.44□□□□□ -0.42
NDUFA4-204ENST00000482299 VASPP50552 380 aaPredicted RBP12.43□□□□□ -0.42
NDUFA4-204ENST00000482299 CCDC61Q9Y6R9 512 aa12.43□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 101 ms