RNA–Protein interactions for RNA: ENST00000481673.5

CHKB-209, Transcript of choline kinase beta, humanhuman

TSL 1 (best)

Gene CHKB, Length 1,856 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHKB-209ENST00000481673 UTP3Q9NQZ2 479 aaKnown RBP eCLIP21.29■■□□□ 13e-12■■■■■ 64.6
CHKB-209ENST00000481673 HNRNPKP61978 463 aaKnown RBP eCLIP18.69■□□□□ 0.582e-21■■■■■ 55.9
CHKB-209ENST00000481673 NCBP2P52298 156 aaKnown RBP eCLIP18.8■□□□□ 0.62e-12■■■■■ 41
CHKB-209ENST00000481673 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP21.25■□□□□ 0.998e-7■■■■■ 32.1
CHKB-209ENST00000481673 PCBP1Q15365 356 aaKnown RBP eCLIP21.26■□□□□ 0.993e-6■■■■■ 28.8
CHKB-209ENST00000481673 AQRO60306 1485 aaKnown RBP eCLIP30.24■■■□□ 2.433e-8■■■■■ 28.1
CHKB-209ENST00000481673 EFTUD2Q15029 972 aaKnown RBP eCLIP20.35■□□□□ 0.857e-7■■■■□ 22.4
CHKB-209ENST00000481673 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP15.42■□□□□ 0.066e-9■■■■□ 21.2
CHKB-209ENST00000481673 SF3B4Q15427 424 aaKnown RBP eCLIP17.23■□□□□ 0.351e-11■■■■□ 21.2
CHKB-209ENST00000481673 DDX59Q5T1V6 619 aaKnown RBP eCLIP18.92■□□□□ 0.621e-6■■■■□ 19.8
CHKB-209ENST00000481673 SMNDC1O75940 238 aaKnown RBP eCLIP19.08■□□□□ 0.656e-8■■■□□ 19.1
CHKB-209ENST00000481673 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP28.55■■■□□ 2.164e-7■■■□□ 18.4
CHKB-209ENST00000481673 GRWD1Q9BQ67 446 aaKnown RBP eCLIP27.93■■■□□ 2.069e-8■■■□□ 18
CHKB-209ENST00000481673 DDX24Q9GZR7 859 aaKnown RBP eCLIP23.73■■□□□ 1.392e-6■■■□□ 17.9
CHKB-209ENST00000481673 SDAD1Q9NVU7 687 aaKnown RBP eCLIP19.86■□□□□ 0.772e-6■■■□□ 16
CHKB-209ENST00000481673 SF3A3Q12874 501 aaKnown RBP eCLIP20.09■□□□□ 0.816e-7■■□□□ 13.8
CHKB-209ENST00000481673 U2AF2P26368 475 aaKnown RBP eCLIP23.04■■□□□ 1.281e-6■■□□□ 13.5
CHKB-209ENST00000481673 BUD13Q9BRD0 619 aaKnown RBP eCLIP21.29■■□□□ 16e-7■■□□□ 13.4
CHKB-209ENST00000481673 PRPF4O43172 522 aaKnown RBP eCLIP20.46■□□□□ 0.875e-7■■□□□ 13.1
CHKB-209ENST00000481673 PPIGQ13427 754 aaKnown RBP eCLIP20.04■□□□□ 0.89e-8■■□□□ 12.8
CHKB-209ENST00000481673 PCBP2Q15366 365 aaKnown RBP eCLIP19.62■□□□□ 0.736e-9■■□□□ 11.9
CHKB-209ENST00000481673 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP25■■□□□ 1.593e-8■□□□□ 11.2
CHKB-209ENST00000481673 PABPN1Q86U42 306 aaKnown RBP eCLIP33.52■■■□□ 2.969e-7■□□□□ 10.2
CHKB-209ENST00000481673 LSM11P83369 360 aaKnown RBP eCLIP18.37■□□□□ 0.532e-6■□□□□ 10
CHKB-209ENST00000481673 XRN2Q9H0D6 950 aaKnown RBP eCLIP20.57■□□□□ 0.883e-11■□□□□ 9.9
CHKB-209ENST00000481673 RBFOX2O43251 390 aaKnown RBP eCLIP16.46■□□□□ 0.234e-7■□□□□ 9.1
CHKB-209ENST00000481673 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP19.56■□□□□ 0.724e-6■□□□□ 8.2
Retrieved 27 of 27 RNA–protein pairs in 6.7 ms