RNA–Protein interactions for RNA: ENST00000480952.1

NDC1-202, Transcript of NDC1 transmembrane nucleoporin, humanhuman

TSL 3

Gene NDC1, Length 785 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NDC1-202ENST00000480952 NISCHQ9Y2I1 1504 aa33.94■■■■□ 3.02
NDC1-202ENST00000480952 ABCC9O60706 1549 aa31.15■■■□□ 2.58
NDC1-202ENST00000480952 CCDC180Q9P1Z9 1646 aa30.55■■■□□ 2.48
NDC1-202ENST00000480952 DNAJC5BQ9UF47 199 aa29.68■■■□□ 2.34
NDC1-202ENST00000480952 RB1CC1Q8TDY2 1594 aa29.39■■■□□ 2.3
NDC1-202ENST00000480952 NACADO15069 1562 aa29.08■■■□□ 2.25
NDC1-202ENST00000480952 DCAF8L2P0C7V8 631 aa29.07■■■□□ 2.24
NDC1-202ENST00000480952 PABPN1Q86U42 306 aaKnown RBP eCLIP29.02■■■□□ 2.24
NDC1-202ENST00000480952 UNC13AQ9UPW8 1703 aa28.59■■■□□ 2.17
NDC1-202ENST00000480952 BICRAQ9NZM4 1560 aa28.51■■■□□ 2.15
NDC1-202ENST00000480952 MYO15BQ96JP2 1530 aa28.51■■■□□ 2.15
NDC1-202ENST00000480952 CECR2Q9BXF3 1484 aa28.11■■■□□ 2.09
NDC1-202ENST00000480952 SHROOM4Q9ULL8 1493 aa28.09■■■□□ 2.09
NDC1-202ENST00000480952 CC2D2AQ9P2K1 1620 aa28.06■■■□□ 2.08
NDC1-202ENST00000480952 ZCCHC6Q5VYS8 1495 aaKnown RBP28.01■■■□□ 2.07
NDC1-202ENST00000480952 DCAF1Q9Y4B6 1507 aa27.97■■■□□ 2.07
NDC1-202ENST00000480952 SCRIBQ14160 1630 aa27.89■■■□□ 2.06
NDC1-202ENST00000480952 EIF4G1Q04637 1599 aaKnown RBP27.89■■■□□ 2.05
NDC1-202ENST00000480952 DNAJC5Q9H3Z4 198 aa27.61■■■□□ 2.01
NDC1-202ENST00000480952 CUX2O14529 1486 aa27■■□□□ 1.91
NDC1-202ENST00000480952 ERCC6Q03468 1493 aa26.96■■□□□ 1.91
NDC1-202ENST00000480952 NCAPD3P42695 1498 aa26.89■■□□□ 1.9
NDC1-202ENST00000480952 ATAD2BQ9ULI0 1458 aa26.74■■□□□ 1.87
NDC1-202ENST00000480952 SMARCA2P51531 1590 aa26.62■■□□□ 1.85
NDC1-202ENST00000480952 NESP48681 1621 aa26.61■■□□□ 1.85
NDC1-202ENST00000480952 HMGXB3Q12766 1538 aa26.59■■□□□ 1.85
NDC1-202ENST00000480952 SMARCA4P51532 1647 aa26.54■■□□□ 1.84
NDC1-202ENST00000480952 BAZ1BQ9UIG0 1483 aaKnown RBP26.47■■□□□ 1.83
NDC1-202ENST00000480952 BAZ1AQ9NRL2 1556 aaPredicted RBP26.37■■□□□ 1.81
NDC1-202ENST00000480952 THOC2Q8NI27 1593 aaKnown RBP26.34■■□□□ 1.81
NDC1-202ENST00000480952 LAMC3Q9Y6N6 1575 aa26.31■■□□□ 1.8
NDC1-202ENST00000480952 PDS5BQ9NTI5 1447 aa26.27■■□□□ 1.8
NDC1-202ENST00000480952 PEG3Q9GZU2 1588 aa26.26■■□□□ 1.79
NDC1-202ENST00000480952 TRIM41Q8WV44 630 aa26.26■■□□□ 1.79
NDC1-202ENST00000480952 MROH2BQ7Z745 1585 aa26.16■■□□□ 1.78
NDC1-202ENST00000480952 KIF21AQ7Z4S6 1674 aa26.15■■□□□ 1.78
NDC1-202ENST00000480952 CADPSQ9ULU8 1353 aa26.09■■□□□ 1.77
NDC1-202ENST00000480952 MRC2Q9UBG0 1479 aa26.02■■□□□ 1.76
NDC1-202ENST00000480952 WDR62O43379 1518 aa25.93■■□□□ 1.74
NDC1-202ENST00000480952 CEP164Q9UPV0 1460 aa25.83■■□□□ 1.73
NDC1-202ENST00000480952 OSCARQ8IYS5 282 aa25.82■■□□□ 1.72
NDC1-202ENST00000480952 WIZO95785 1651 aa25.78■■□□□ 1.72
NDC1-202ENST00000480952 FANCD2Q9BXW9 1451 aa25.77■■□□□ 1.72
NDC1-202ENST00000480952 CFTRP13569 1480 aa25.66■■□□□ 1.7
NDC1-202ENST00000480952 URB2Q14146 1524 aaKnown RBP25.55■■□□□ 1.68
NDC1-202ENST00000480952 RSF1Q96T23 1441 aaPredicted RBP25.48■■□□□ 1.67
NDC1-202ENST00000480952 TOP2AP11388 1531 aaKnown RBP25.43■■□□□ 1.66
NDC1-202ENST00000480952 RIMBP3CA6NJZ7 1639 aa25.37■■□□□ 1.65
NDC1-202ENST00000480952 RIMBP3BA6NNM3 1639 aa25.37■■□□□ 1.65
NDC1-202ENST00000480952 RIMBP3Q9UFD9 1639 aa25.37■■□□□ 1.65
NDC1-202ENST00000480952 ZNF608Q9ULD9 1512 aaPredicted RBP25.34■■□□□ 1.65
NDC1-202ENST00000480952 IFT140Q96RY7 1462 aa25.34■■□□□ 1.65
NDC1-202ENST00000480952 ARHGEF11O15085 1522 aa25.28■■□□□ 1.64
NDC1-202ENST00000480952 CYB5RLQ6IPT4 315 aa25.26■■□□□ 1.63
NDC1-202ENST00000480952 TOPBP1Q92547 1522 aa25.21■■□□□ 1.63
NDC1-202ENST00000480952 CCDC88BA6NC98 1476 aa25.21■■□□□ 1.63
NDC1-202ENST00000480952 PRDM2Q13029 1718 aa25.18■■□□□ 1.62
NDC1-202ENST00000480952 TRHP20396 242 aaPredicted RBP25.15■■□□□ 1.62
NDC1-202ENST00000480952 ABCC8Q09428 1581 aa25.14■■□□□ 1.62
NDC1-202ENST00000480952 FBLN2P98095 1184 aa25.11■■□□□ 1.61
NDC1-202ENST00000480952 EIF4G3O43432 1585 aaKnown RBP25.1■■□□□ 1.61
NDC1-202ENST00000480952 AQRO60306 1485 aaKnown RBP eCLIP25.09■■□□□ 1.61
NDC1-202ENST00000480952 DNMBPQ6XZF7 1577 aa25.05■■□□□ 1.6
NDC1-202ENST00000480952 ARAP1Q96P48 1450 aa25■■□□□ 1.59
NDC1-202ENST00000480952 CHD1O14646 1710 aa24.97■■□□□ 1.59
NDC1-202ENST00000480952 TARBP1Q13395 1621 aaKnown RBP24.96■■□□□ 1.59
NDC1-202ENST00000480952 POLA1P09884 1462 aaPredicted RBP24.92■■□□□ 1.58
NDC1-202ENST00000480952 TDRD9Q8NDG6 1382 aaKnown RBP24.89■■□□□ 1.57
NDC1-202ENST00000480952 RAD54L2Q9Y4B4 1467 aa24.87■■□□□ 1.57
NDC1-202ENST00000480952 SOGA1O94964 1423 aa24.86■■□□□ 1.57
NDC1-202ENST00000480952 CHMP7Q8WUX9 453 aaPredicted RBP24.83■■□□□ 1.57
NDC1-202ENST00000480952 SNAPC4Q5SXM2 1469 aa24.78■■□□□ 1.56
NDC1-202ENST00000480952 AEBP2Q6ZN18 517 aaPredicted RBP24.77■■□□□ 1.56
NDC1-202ENST00000480952 CLASP1Q7Z460 1538 aa24.71■■□□□ 1.55
NDC1-202ENST00000480952 FGD5Q6ZNL6 1462 aa24.7■■□□□ 1.55
NDC1-202ENST00000480952 SYNJ1O43426 1573 aa24.69■■□□□ 1.54
NDC1-202ENST00000480952 MAGI1Q96QZ7 1491 aaPredicted RBP24.69■■□□□ 1.54
NDC1-202ENST00000480952 GRIN2BQ13224 1484 aa24.66■■□□□ 1.54
NDC1-202ENST00000480952 WDR97A6NE52 1622 aa24.66■■□□□ 1.54
NDC1-202ENST00000480952 SYNJ2O15056 1496 aa24.63■■□□□ 1.53
NDC1-202ENST00000480952 CUX1P39880 1505 aa24.6■■□□□ 1.53
NDC1-202ENST00000480952 GAPVD1Q14C86 1478 aa24.56■■□□□ 1.52
NDC1-202ENST00000480952 PBRM1Q86U86 1689 aa24.41■■□□□ 1.5
NDC1-202ENST00000480952 ABCA10Q8WWZ4 1543 aa24.39■■□□□ 1.49
NDC1-202ENST00000480952 ABCA5Q8WWZ7 1642 aa24.33■■□□□ 1.49
NDC1-202ENST00000480952 GRIN2AQ12879 1464 aa24.32■■□□□ 1.48
NDC1-202ENST00000480952 ERCC6L2Q5T890 1561 aa24.32■■□□□ 1.48
NDC1-202ENST00000480952 WRNQ14191 1432 aaPredicted RBP eCLIP24.27■■□□□ 1.48
NDC1-202ENST00000480952 NUP160Q12769 1436 aa24.26■■□□□ 1.47
NDC1-202ENST00000480952 CEP170Q5SW79 1584 aa24.25■■□□□ 1.47
NDC1-202ENST00000480952 ADAMTS12P58397 1594 aa24.2■■□□□ 1.46
NDC1-202ENST00000480952 FHAD1B1AJZ9 1412 aa24.19■■□□□ 1.46
NDC1-202ENST00000480952 SUPT5HO00267 1087 aaKnown RBP24.14■■□□□ 1.45
NDC1-202ENST00000480952 SHROOM2Q13796 1616 aa24.13■■□□□ 1.45
NDC1-202ENST00000480952 JPH4Q96JJ6 628 aa24.12■■□□□ 1.45
NDC1-202ENST00000480952 PRG4Q92954 1404 aaPredicted RBP24.11■■□□□ 1.45
NDC1-202ENST00000480952 NPM1P06748 294 aaKnown RBP eCLIP24.08■■□□□ 1.45
NDC1-202ENST00000480952 FAM69CQ0P6D2 419 aa24.08■■□□□ 1.45
NDC1-202ENST00000480952 ERICH3Q5RHP9 1530 aa24.06■■□□□ 1.44
NDC1-202ENST00000480952 TOP2BQ02880 1626 aa24.05■■□□□ 1.44
Retrieved 100 of 20,778 RNA–protein pairs in 92.1 ms