RNA–Protein interactions for RNA: ENST00000480003.5

CD46-214, Transcript of CD46 molecule, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CD46, Length 1,258 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD46-214ENST00000480003 AEBP2Q6ZN18 517 aaPredicted RBP26.3■■□□□ 1.8
CD46-214ENST00000480003 CHIC1Q5VXU3 224 aa25.17■■□□□ 1.62
CD46-214ENST00000480003 NISCHQ9Y2I1 1504 aa22.68■■□□□ 1.22
CD46-214ENST00000480003 SENP3Q9H4L4 574 aaPredicted RBP22.36■■□□□ 1.17
CD46-214ENST00000480003 PHF23Q9BUL5 403 aaPredicted RBP22.09■■□□□ 1.13
CD46-214ENST00000480003 FOXD1Q16676 465 aa20.83■□□□□ 0.93
CD46-214ENST00000480003 PLPPR3Q6T4P5 718 aa20.19■□□□□ 0.82
CD46-214ENST00000480003 CCDC180Q9P1Z9 1646 aa19.9■□□□□ 0.78
CD46-214ENST00000480003 PPP6R1Q9UPN7 881 aa19.64■□□□□ 0.73
CD46-214ENST00000480003 ADRA2BP18089 450 aa19.59■□□□□ 0.73
CD46-214ENST00000480003 PIAS4Q8N2W9 510 aaPredicted RBP19.52■□□□□ 0.72
CD46-214ENST00000480003 MSH5O43196 834 aa19.38■□□□□ 0.69
CD46-214ENST00000480003 ABCC9O60706 1549 aa19.28■□□□□ 0.68
CD46-214ENST00000480003 ZCCHC6Q5VYS8 1495 aaKnown RBP18.93■□□□□ 0.62
CD46-214ENST00000480003 DCAF8L2P0C7V8 631 aa18.89■□□□□ 0.61
CD46-214ENST00000480003 DCAF1Q9Y4B6 1507 aa18.79■□□□□ 0.6
CD46-214ENST00000480003 MYO15BQ96JP2 1530 aa18.75■□□□□ 0.59
CD46-214ENST00000480003 NACADO15069 1562 aa18.72■□□□□ 0.59
CD46-214ENST00000480003 RB1CC1Q8TDY2 1594 aa18.64■□□□□ 0.57
CD46-214ENST00000480003 POTEDQ86YR6 584 aa18.56■□□□□ 0.56
CD46-214ENST00000480003 SCRIBQ14160 1630 aa18.2■□□□□ 0.5
CD46-214ENST00000480003 PABPN1Q86U42 306 aaKnown RBP eCLIP18.16■□□□□ 0.5
CD46-214ENST00000480003 UNC13AQ9UPW8 1703 aa18.15■□□□□ 0.5
CD46-214ENST00000480003 BICRAQ9NZM4 1560 aa18.11■□□□□ 0.49
CD46-214ENST00000480003 SHROOM4Q9ULL8 1493 aa18.09■□□□□ 0.49
CD46-214ENST00000480003 DNAJC5BQ9UF47 199 aa18.06■□□□□ 0.48
CD46-214ENST00000480003 MAPK8IP2Q13387 824 aaPredicted RBP17.93■□□□□ 0.46
CD46-214ENST00000480003 SCAF1Q9H7N4 1312 aaKnown RBP17.87■□□□□ 0.45
CD46-214ENST00000480003 DMRT2Q9Y5R5 561 aa17.78■□□□□ 0.44
CD46-214ENST00000480003 PPP4R3CPQ6ZMV5 832 aa17.73■□□□□ 0.43
CD46-214ENST00000480003 CECR2Q9BXF3 1484 aa17.67■□□□□ 0.42
CD46-214ENST00000480003 EIF4G1Q04637 1599 aaKnown RBP17.57■□□□□ 0.4
CD46-214ENST00000480003 BAZ1AQ9NRL2 1556 aaPredicted RBP17.51■□□□□ 0.39
CD46-214ENST00000480003 MROH2BQ7Z745 1585 aa17.49■□□□□ 0.39
CD46-214ENST00000480003 SMARCA4P51532 1647 aa17.47■□□□□ 0.39
CD46-214ENST00000480003 RSF1Q96T23 1441 aaPredicted RBP17.45■□□□□ 0.38
CD46-214ENST00000480003 CC2D2AQ9P2K1 1620 aa17.43■□□□□ 0.38
CD46-214ENST00000480003 ATAD2BQ9ULI0 1458 aa17.38■□□□□ 0.37
CD46-214ENST00000480003 NCAPD3P42695 1498 aa17.36■□□□□ 0.37
CD46-214ENST00000480003 CNKSR2Q8WXI2 1034 aa17.34■□□□□ 0.37
CD46-214ENST00000480003 PEG3Q9GZU2 1588 aa17.33■□□□□ 0.37
CD46-214ENST00000480003 SMARCA2P51531 1590 aa17.31■□□□□ 0.36
CD46-214ENST00000480003 WIZO95785 1651 aa17.26■□□□□ 0.35
CD46-214ENST00000480003 SUPT5HO00267 1087 aaKnown RBP17.25■□□□□ 0.35
CD46-214ENST00000480003 HOXD11P31277 338 aaPredicted RBP17.21■□□□□ 0.35
CD46-214ENST00000480003 HMGXB3Q12766 1538 aa17.2■□□□□ 0.34
CD46-214ENST00000480003 BAZ1BQ9UIG0 1483 aaKnown RBP17.18■□□□□ 0.34
CD46-214ENST00000480003 RNF216Q9NWF9 866 aaPredicted RBP17.13■□□□□ 0.33
CD46-214ENST00000480003 TOP2AP11388 1531 aaKnown RBP17.09■□□□□ 0.33
CD46-214ENST00000480003 NCBP3Q53F19 620 aaKnown RBP17.08■□□□□ 0.32
CD46-214ENST00000480003 DCAF8L1A6NGE4 600 aa17.01■□□□□ 0.31
CD46-214ENST00000480003 CCDC88BA6NC98 1476 aa16.98■□□□□ 0.31
CD46-214ENST00000480003 NPM3O75607 178 aaKnown RBP16.89■□□□□ 0.29
CD46-214ENST00000480003 CADPSQ9ULU8 1353 aa16.88■□□□□ 0.29
CD46-214ENST00000480003 CFTRP13569 1480 aa16.81■□□□□ 0.28
CD46-214ENST00000480003 DNAJC5Q9H3Z4 198 aa16.8■□□□□ 0.28
CD46-214ENST00000480003 NESP48681 1621 aa16.79■□□□□ 0.28
CD46-214ENST00000480003 KCNA4P22459 653 aa16.77■□□□□ 0.28
CD46-214ENST00000480003 LAMC3Q9Y6N6 1575 aa16.74■□□□□ 0.27
CD46-214ENST00000480003 PDS5BQ9NTI5 1447 aa16.69■□□□□ 0.26
CD46-214ENST00000480003 FANCD2Q9BXW9 1451 aa16.61■□□□□ 0.25
CD46-214ENST00000480003 RNF39Q9H2S5 420 aa16.58■□□□□ 0.24
CD46-214ENST00000480003 CUX2O14529 1486 aa16.58■□□□□ 0.24
CD46-214ENST00000480003 ERCC6Q03468 1493 aa16.55■□□□□ 0.24
CD46-214ENST00000480003 CEP164Q9UPV0 1460 aa16.52■□□□□ 0.23
CD46-214ENST00000480003 PRDM2Q13029 1718 aa16.5■□□□□ 0.23
CD46-214ENST00000480003 CACNB1Q02641 598 aaPredicted RBP16.49■□□□□ 0.23
CD46-214ENST00000480003 KIF21AQ7Z4S6 1674 aa16.49■□□□□ 0.23
CD46-214ENST00000480003 MRC2Q9UBG0 1479 aa16.45■□□□□ 0.22
CD46-214ENST00000480003 URB2Q14146 1524 aaKnown RBP16.43■□□□□ 0.22
CD46-214ENST00000480003 ABCC8Q09428 1581 aa16.41■□□□□ 0.22
CD46-214ENST00000480003 WRNQ14191 1432 aaPredicted RBP eCLIP16.39■□□□□ 0.21
CD46-214ENST00000480003 THOC2Q8NI27 1593 aaKnown RBP16.38■□□□□ 0.21
CD46-214ENST00000480003 TOPBP1Q92547 1522 aa16.38■□□□□ 0.21
CD46-214ENST00000480003 WDR62O43379 1518 aa16.37■□□□□ 0.21
CD46-214ENST00000480003 CUX1P39880 1505 aa16.37■□□□□ 0.21
CD46-214ENST00000480003 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.37■□□□□ 0.214e-9■■□□□ 11.7
CD46-214ENST00000480003 DNMBPQ6XZF7 1577 aa16.34■□□□□ 0.21
CD46-214ENST00000480003 C1QBPQ07021 282 aaKnown RBP16.32■□□□□ 0.2
CD46-214ENST00000480003 TOP2BQ02880 1626 aa16.27■□□□□ 0.2
CD46-214ENST00000480003 SYNJ1O43426 1573 aa16.27■□□□□ 0.2
CD46-214ENST00000480003 TRIM41Q8WV44 630 aa16.27■□□□□ 0.2
CD46-214ENST00000480003 POLA1P09884 1462 aaPredicted RBP16.26■□□□□ 0.19
CD46-214ENST00000480003 FGD5Q6ZNL6 1462 aa16.25■□□□□ 0.19
CD46-214ENST00000480003 SOGA1O94964 1423 aa16.25■□□□□ 0.19
CD46-214ENST00000480003 BIVM-ERCC5R4GMW8 1640 aa16.23■□□□□ 0.19
CD46-214ENST00000480003 RAD54L2Q9Y4B4 1467 aa16.22■□□□□ 0.19
CD46-214ENST00000480003 IFT140Q96RY7 1462 aa16.2■□□□□ 0.18
CD46-214ENST00000480003 TARBP1Q13395 1621 aaKnown RBP16.15■□□□□ 0.18
CD46-214ENST00000480003 ABCA10Q8WWZ4 1543 aa16.14■□□□□ 0.18
CD46-214ENST00000480003 TDRD9Q8NDG6 1382 aaKnown RBP16.13■□□□□ 0.17
CD46-214ENST00000480003 ZNF608Q9ULD9 1512 aaPredicted RBP16.11■□□□□ 0.17
CD46-214ENST00000480003 U3KPZ7 1027 aaPredicted RBP16.1■□□□□ 0.17
CD46-214ENST00000480003 AQRO60306 1485 aaKnown RBP eCLIP16.1■□□□□ 0.175e-23■■■■■ 36
CD46-214ENST00000480003 SLC4A2P04920 1241 aa16.08■□□□□ 0.16
CD46-214ENST00000480003 GAPVD1Q14C86 1478 aa16.03■□□□□ 0.16
CD46-214ENST00000480003 KIF27Q86VH2 1401 aa16.02■□□□□ 0.16
CD46-214ENST00000480003 IGF1RP08069 1367 aa16.02■□□□□ 0.16
CD46-214ENST00000480003 RUSC2Q8N2Y8 1516 aa16.02■□□□□ 0.15
CD46-214ENST00000480003 WDR97A6NE52 1622 aa16.01■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 7.3 ms