RNA–Protein interactions for RNA: ENST00000479536.2

NF1-209, Transcript of neurofibromin 1, humanhuman

TSL 3

Gene NF1, Length 811 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NF1-209ENST00000479536 AEBP2Q6ZN18 517 aaPredicted RBP22.41■■□□□ 1.18
NF1-209ENST00000479536 CHIC1Q5VXU3 224 aa21.02■□□□□ 0.96
NF1-209ENST00000479536 SENP3Q9H4L4 574 aaPredicted RBP19.16■□□□□ 0.66
NF1-209ENST00000479536 PHF23Q9BUL5 403 aaPredicted RBP18.89■□□□□ 0.61
NF1-209ENST00000479536 FOXD1Q16676 465 aa17.9■□□□□ 0.46
NF1-209ENST00000479536 POTEDQ86YR6 584 aa16.9■□□□□ 0.3
NF1-209ENST00000479536 MSH5O43196 834 aa16.85■□□□□ 0.29
NF1-209ENST00000479536 PIAS4Q8N2W9 510 aaPredicted RBP16.69■□□□□ 0.26
NF1-209ENST00000479536 PLPPR3Q6T4P5 718 aa16.68■□□□□ 0.26
NF1-209ENST00000479536 PPP6R1Q9UPN7 881 aa16.53■□□□□ 0.24
NF1-209ENST00000479536 ADRA2BP18089 450 aa16.49■□□□□ 0.23
NF1-209ENST00000479536 MAPK8IP2Q13387 824 aaPredicted RBP15.23■□□□□ 0.03
NF1-209ENST00000479536 DMRT2Q9Y5R5 561 aa15.14■□□□□ 0.01
NF1-209ENST00000479536 SCAF1Q9H7N4 1312 aaKnown RBP15.08■□□□□ 0
NF1-209ENST00000479536 CACNB1Q02641 598 aaPredicted RBP14.66□□□□□ -0.06
NF1-209ENST00000479536 DCAF8L1A6NGE4 600 aa14.63□□□□□ -0.07
NF1-209ENST00000479536 PPP4R3CPQ6ZMV5 832 aa14.6□□□□□ -0.07
NF1-209ENST00000479536 HOXD11P31277 338 aaPredicted RBP14.47□□□□□ -0.09
NF1-209ENST00000479536 CNKSR2Q8WXI2 1034 aa14.37□□□□□ -0.11
NF1-209ENST00000479536 RNF39Q9H2S5 420 aa14.33□□□□□ -0.12
NF1-209ENST00000479536 RNF216Q9NWF9 866 aaPredicted RBP14.3□□□□□ -0.12
NF1-209ENST00000479536 C1QBPQ07021 282 aaKnown RBP14.11□□□□□ -0.15
NF1-209ENST00000479536 NCBP3Q53F19 620 aaKnown RBP13.97□□□□□ -0.17
NF1-209ENST00000479536 DNAJC5BQ9UF47 199 aa13.97□□□□□ -0.17
NF1-209ENST00000479536 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.85□□□□□ -0.19
NF1-209ENST00000479536 NPM3O75607 178 aaKnown RBP13.75□□□□□ -0.21
NF1-209ENST00000479536 U3KPZ7 1027 aaPredicted RBP13.5□□□□□ -0.25
NF1-209ENST00000479536 CAPN15O75808 1086 aa13.42□□□□□ -0.26
NF1-209ENST00000479536 SPINK5Q9NQ38 1064 aaPredicted RBP13.4□□□□□ -0.26
NF1-209ENST00000479536 DSG3P32926 999 aa13.35□□□□□ -0.27
NF1-209ENST00000479536 KCNA4P22459 653 aa13.27□□□□□ -0.29
NF1-209ENST00000479536 POTEHQ6S545 545 aa13.2□□□□□ -0.3
NF1-209ENST00000479536 SLC4A2P04920 1241 aa13.19□□□□□ -0.3
NF1-209ENST00000479536 TRHP20396 242 aaPredicted RBP13.15□□□□□ -0.3
NF1-209ENST00000479536 APLP2Q06481 763 aa13.1□□□□□ -0.31
NF1-209ENST00000479536 ABCB7O75027 752 aa13.08□□□□□ -0.32
NF1-209ENST00000479536 ZNF219Q9P2Y4 722 aaPredicted RBP13.07□□□□□ -0.32
NF1-209ENST00000479536 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.02□□□□□ -0.33
NF1-209ENST00000479536 HNRNPUL2Q1KMD3 747 aaKnown RBP13.02□□□□□ -0.33
NF1-209ENST00000479536 SAMD1Q6SPF0 538 aaPredicted RBP12.93□□□□□ -0.34
NF1-209ENST00000479536 RBM42Q9BTD8 480 aaKnown RBP12.75□□□□□ -0.37
NF1-209ENST00000479536 MYCNP04198 464 aaPredicted RBP12.73□□□□□ -0.37
NF1-209ENST00000479536 POLA2Q14181 598 aa12.7□□□□□ -0.38
NF1-209ENST00000479536 CHRDL2Q6WN34 429 aa12.58□□□□□ -0.4
NF1-209ENST00000479536 SLC4A1APQ9BWU0 796 aaKnown RBP12.48□□□□□ -0.41
NF1-209ENST00000479536 FOXD4L1Q9NU39 408 aa12.46□□□□□ -0.41
NF1-209ENST00000479536 ATF5Q9Y2D1 282 aaPredicted RBP12.46□□□□□ -0.41
NF1-209ENST00000479536 AKT1S1Q96B36 256 aa12.39□□□□□ -0.43
NF1-209ENST00000479536 ZBTB12Q9Y330 459 aaPredicted RBP12.39□□□□□ -0.43
NF1-209ENST00000479536 OSCARQ8IYS5 282 aa12.31□□□□□ -0.44
NF1-209ENST00000479536 REM2Q8IYK8 340 aaPredicted RBP12.29□□□□□ -0.44
NF1-209ENST00000479536 SP7Q8TDD2 431 aaPredicted RBP12.24□□□□□ -0.45
NF1-209ENST00000479536 PIP4P2Q8N4L2 257 aa12.22□□□□□ -0.45
NF1-209ENST00000479536 PITPNM1O00562 1244 aa12.17□□□□□ -0.46
NF1-209ENST00000479536 ZBTB22O15209 634 aa12.17□□□□□ -0.46
NF1-209ENST00000479536 HAX1O00165 279 aa12.12□□□□□ -0.47
NF1-209ENST00000479536 FXR2P51116 673 aaKnown RBP eCLIP12.09□□□□□ -0.476e-7■□□□□ 10.7
NF1-209ENST00000479536 ATXN8OSP0DMR3 200 aa12.07□□□□□ -0.48
NF1-209ENST00000479536 FBLN2P98095 1184 aa12.01□□□□□ -0.49
NF1-209ENST00000479536 SPDYE2BA6NHP3 402 aa11.99□□□□□ -0.49
NF1-209ENST00000479536 SPDYE6P0CI01 402 aa11.99□□□□□ -0.49
NF1-209ENST00000479536 SPDYE2Q495Y8 402 aa11.99□□□□□ -0.49
NF1-209ENST00000479536 EVX2Q03828 476 aa11.91□□□□□ -0.5
NF1-209ENST00000479536 CLEC11AQ9Y240 323 aa11.9□□□□□ -0.5
NF1-209ENST00000479536 PRKAR2AP13861 404 aaKnown RBP11.87□□□□□ -0.51
NF1-209ENST00000479536 MKRN4PQ13434 485 aaPredicted RBP11.86□□□□□ -0.51
NF1-209ENST00000479536 SPDYE1Q8NFV5 336 aaPredicted RBP11.86□□□□□ -0.51
NF1-209ENST00000479536 ZNF692Q9BU19 519 aaPredicted RBP11.84□□□□□ -0.51
NF1-209ENST00000479536 SSUH2Q9Y2M2 353 aa11.78□□□□□ -0.52
NF1-209ENST00000479536 C19orf67A6NJJ6 358 aa11.72□□□□□ -0.53
NF1-209ENST00000479536 CHADLQ6NUI6 762 aa11.69□□□□□ -0.54
NF1-209ENST00000479536 PABPN1Q86U42 306 aaKnown RBP eCLIP11.66□□□□□ -0.54
NF1-209ENST00000479536 PRR29P0C7W0 189 aa11.64□□□□□ -0.55
NF1-209ENST00000479536 GABBR2O75899 941 aa11.63□□□□□ -0.55
NF1-209ENST00000479536 LHX8Q68G74 356 aa11.49□□□□□ -0.57
NF1-209ENST00000479536 CD44P16070 742 aaKnown RBP11.48□□□□□ -0.57
NF1-209ENST00000479536 FARP1Q9Y4F1 1045 aaPredicted RBP11.46□□□□□ -0.57
NF1-209ENST00000479536 CSRNP3Q8WYN3 585 aa11.38□□□□□ -0.59
NF1-209ENST00000479536 POTEIP0CG38 1075 aa11.37□□□□□ -0.59
NF1-209ENST00000479536 CLCN6P51797 869 aa11.31□□□□□ -0.6
NF1-209ENST00000479536 DCBLD2Q96PD2 775 aa11.29□□□□□ -0.6
NF1-209ENST00000479536 ZRANB1Q9UGI0 708 aa11.28□□□□□ -0.6
NF1-209ENST00000479536 CREBZFQ9NS37 354 aa11.26□□□□□ -0.61
NF1-209ENST00000479536 ZNF579Q8NAF0 562 aaKnown RBP11.25□□□□□ -0.61
NF1-209ENST00000479536 STAG3Q9UJ98 1225 aa11.25□□□□□ -0.61
NF1-209ENST00000479536 SPDYE4A6NLX3 237 aa11.2□□□□□ -0.62
NF1-209ENST00000479536 GALR2O43603 387 aaPredicted RBP11.16□□□□□ -0.62
NF1-209ENST00000479536 EHMT2Q96KQ7 1210 aa11.15□□□□□ -0.62
NF1-209ENST00000479536 PAK3O75914 559 aaPredicted RBP11.14□□□□□ -0.63
NF1-209ENST00000479536 PHF12Q96QT6 1004 aa11.11□□□□□ -0.63
NF1-209ENST00000479536 NPM1P06748 294 aaKnown RBP eCLIP11.07□□□□□ -0.64
NF1-209ENST00000479536 PLSCR2Q9NRY7 297 aa11.03□□□□□ -0.64
NF1-209ENST00000479536 MNX1P50219 401 aaPredicted RBP11.02□□□□□ -0.65
NF1-209ENST00000479536 OTUD5Q96G74 571 aa11□□□□□ -0.65
NF1-209ENST00000479536 POTEB2H3BUK9 544 aa10.99□□□□□ -0.65
NF1-209ENST00000479536 PELP1Q8IZL8 1130 aaKnown RBP10.96□□□□□ -0.65
NF1-209ENST00000479536 MS4A3Q96HJ5 214 aa10.93□□□□□ -0.66
NF1-209ENST00000479536 TSPYL2Q9H2G4 693 aaPredicted RBP10.89□□□□□ -0.67
NF1-209ENST00000479536 METRNQ9UJH8 293 aa10.89□□□□□ -0.67
NF1-209ENST00000479536 ASTLQ6HA08 431 aaPredicted RBP10.88□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms