RNA–Protein interactions for RNA: ENST00000477447.6

TARDBP-208, Transcript of TAR DNA binding protein, humanhuman

TSL 5

Gene TARDBP, Length 409 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TARDBP-208ENST00000477447 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP0.47□□□□□ -2.331e-41■■■■■ 46.1
TARDBP-208ENST00000477447 DDX6P26196 483 aaKnown RBP eCLIP4.16□□□□□ -1.745e-34■□□□□ 10
TARDBP-208ENST00000477447 GTF2F1P35269 517 aaKnown RBP eCLIP5.24□□□□□ -1.577e-26■■■□□ 18.2
TARDBP-208ENST00000477447 PUM2Q8TB72 1066 aaKnown RBP eCLIP4.89□□□□□ -1.632e-21■■□□□ 12.4
TARDBP-208ENST00000477447 PRPF4O43172 522 aaKnown RBP eCLIP3.63□□□□□ -1.832e-14■■□□□ 12.4
TARDBP-208ENST00000477447 LIN28BQ6ZN17 250 aaKnown RBP eCLIP3.31□□□□□ -1.881e-13■■■■■ 35.6
TARDBP-208ENST00000477447 TARDBPQ13148 414 aaKnown RBP eCLIP4.34□□□□□ -1.711e-13■■■■■ 26.9
TARDBP-208ENST00000477447 DDX55Q8NHQ9 600 aaKnown RBP eCLIP4.37□□□□□ -1.713e-13■□□□□ 8.3
TARDBP-208ENST00000477447 YBX3P16989 372 aaKnown RBP eCLIP4.7□□□□□ -1.668e-13■□□□□ 8.1
TARDBP-208ENST00000477447 GRSF1Q12849 480 aaKnown RBP eCLIP3.33□□□□□ -1.881e-11■■□□□ 12.1
TARDBP-208ENST00000477447 SUB1P53999 127 aaKnown RBP eCLIP2.02□□□□□ -2.091e-11■□□□□ 9.4
TARDBP-208ENST00000477447 UPF1Q92900 1129 aaKnown RBP eCLIP7.87□□□□□ -1.152e-11■■■□□ 15.1
TARDBP-208ENST00000477447 U2AF2P26368 475 aaKnown RBP eCLIP1.78□□□□□ -2.128e-11■□□□□ 9.8
TARDBP-208ENST00000477447 EIF4G2P78344 907 aaKnown RBP eCLIP6.64□□□□□ -1.358e-11■■□□□ 12.1
TARDBP-208ENST00000477447 SRSF7Q16629 238 aaKnown RBP eCLIP3.73□□□□□ -1.812e-10■■■□□ 18.4
TARDBP-208ENST00000477447 FUSP35637 526 aaKnown RBP eCLIP1.35□□□□□ -2.193e-10■■□□□ 12.1
TARDBP-208ENST00000477447 KHSRPQ92945 711 aaKnown RBP eCLIP7.71□□□□□ -1.183e-10■■■■□ 22.7
TARDBP-208ENST00000477447 ZRANB2O95218 330 aaKnown RBP eCLIP4.4□□□□□ -1.714e-10■□□□□ 10.1
TARDBP-208ENST00000477447 UTP3Q9NQZ2 479 aaKnown RBP eCLIP6.13□□□□□ -1.431e-9■■■■□ 21.2
TARDBP-208ENST00000477447 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP8.27□□□□□ -1.091e-9■■■□□ 18
TARDBP-208ENST00000477447 LSM11P83369 360 aaKnown RBP eCLIP7.36□□□□□ -1.233e-9■■□□□ 11.9
TARDBP-208ENST00000477447 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP3.24□□□□□ -1.895e-8■■■■■ 204.6
TARDBP-208ENST00000477447 RBM22Q9NW64 420 aaKnown RBP eCLIP1.45□□□□□ -2.185e-8■□□□□ 9.1
TARDBP-208ENST00000477447 CPEB4Q17RY0 729 aaKnown RBP eCLIP4.53□□□□□ -1.687e-8■□□□□ 8.3
TARDBP-208ENST00000477447 ZC3H11AO75152 810 aaKnown RBP eCLIP3.6□□□□□ -1.831e-7■■□□□ 12
TARDBP-208ENST00000477447 TIA1P31483 386 aaKnown RBP eCLIP2.84□□□□□ -1.952e-7■■■□□ 17.4
TARDBP-208ENST00000477447 CPSF6Q16630 551 aaKnown RBP eCLIP5.26□□□□□ -1.572e-7■■■■■ 27.5
TARDBP-208ENST00000477447 SF3B4Q15427 424 aaKnown RBP eCLIP3.32□□□□□ -1.883e-7■□□□□ 11.1
TARDBP-208ENST00000477447 U2AF1Q01081 240 aaKnown RBP eCLIP4.31□□□□□ -1.723e-7■■■□□ 15.3
TARDBP-208ENST00000477447 SRSF1Q07955 248 aaKnown RBP eCLIP3.6□□□□□ -1.834e-7■■□□□ 11.7
TARDBP-208ENST00000477447 ZNF800Q2TB10 664 aaPredicted RBP eCLIP6.21□□□□□ -1.426e-7■■■■□ 26.5
TARDBP-208ENST00000477447 TIAL1Q01085 375 aaKnown RBP eCLIP3.95□□□□□ -1.786e-7■■□□□ 11.7
TARDBP-208ENST00000477447 BUD13Q9BRD0 619 aaKnown RBP eCLIP5.31□□□□□ -1.563e-6■□□□□ 10.1
TARDBP-208ENST00000477447 QKIQ96PU8 341 aaKnown RBP eCLIP1.41□□□□□ -2.183e-6■□□□□ 9.1
TARDBP-208ENST00000477447 CDC40O60508 579 aaKnown RBP eCLIP1.77□□□□□ -2.135e-6■■□□□ 12.3
TARDBP-208ENST00000477447 ILF3Q12906 894 aaKnown RBP eCLIP3.2□□□□□ -1.96e-6■□□□□ 8.6
TARDBP-208ENST00000477447 TBRG4Q969Z0 631 aaKnown RBP eCLIP2.05□□□□□ -2.087e-6■■■■■ 27.5
Retrieved 37 of 37 RNA–protein pairs in 9 ms