RNA–Protein interactions for RNA: ENST00000474345.5

FDPS-210, Transcript of farnesyl diphosphate synthase, humanhuman

TSL 3

Gene FDPS, Length 713 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FDPS-210ENST00000474345 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP14.7□□□□□ -0.065e-9■■■■■ 76.4
FDPS-210ENST00000474345 FMR1Q06787 632 aaKnown RBP eCLIP18.48■□□□□ 0.556e-15■■■■■ 61.4
FDPS-210ENST00000474345 SF3B1O75533 1304 aaKnown RBP eCLIP16.39■□□□□ 0.216e-7■■■■■ 31
FDPS-210ENST00000474345 SF3B4Q15427 424 aaKnown RBP eCLIP13.65□□□□□ -0.227e-30■■■■■ 27.2
FDPS-210ENST00000474345 AQRO60306 1485 aaKnown RBP eCLIP26.01■■□□□ 1.752e-9■■■■□ 26.7
FDPS-210ENST00000474345 XRN2Q9H0D6 950 aaKnown RBP eCLIP17.46■□□□□ 0.392e-6■■■■□ 24.8
FDPS-210ENST00000474345 KHDRBS1Q07666 443 aaKnown RBP eCLIP13.21□□□□□ -0.295e-13■■■■□ 23.9
FDPS-210ENST00000474345 SRSF1Q07955 248 aaKnown RBP eCLIP13.75□□□□□ -0.213e-10■■■■□ 22.2
FDPS-210ENST00000474345 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP14.03□□□□□ -0.164e-9■■■■□ 21.1
FDPS-210ENST00000474345 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP23.94■■□□□ 1.426e-8■■■■□ 20.3
FDPS-210ENST00000474345 ILF3Q12906 894 aaKnown RBP eCLIP14.95□□□□□ -0.024e-8■■■□□ 18.4
FDPS-210ENST00000474345 GTF2F1P35269 517 aaKnown RBP eCLIP16.37■□□□□ 0.216e-8■■■□□ 18.2
FDPS-210ENST00000474345 UTP3Q9NQZ2 479 aaKnown RBP eCLIP16.25■□□□□ 0.191e-7■■■□□ 18
FDPS-210ENST00000474345 HNRNPUQ00839 825 aaKnown RBP eCLIP19.62■□□□□ 0.733e-6■■■□□ 17.5
FDPS-210ENST00000474345 HNRNPCP07910 306 aaKnown RBP eCLIP11.37□□□□□ -0.592e-9■■■□□ 16.1
FDPS-210ENST00000474345 G3BP1Q13283 466 aaKnown RBP eCLIP18.83■□□□□ 0.62e-7■■■□□ 15.4
FDPS-210ENST00000474345 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP15.81■□□□□ 0.126e-8■■■□□ 15.1
FDPS-210ENST00000474345 BUD13Q9BRD0 619 aaKnown RBP eCLIP16.9■□□□□ 0.34e-16■■■□□ 14.6
FDPS-210ENST00000474345 SMNDC1O75940 238 aaKnown RBP eCLIP13.47□□□□□ -0.256e-7■■■□□ 14.6
FDPS-210ENST00000474345 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP12.66□□□□□ -0.382e-10■■□□□ 14.5
FDPS-210ENST00000474345 EFTUD2Q15029 972 aaKnown RBP eCLIP14.73□□□□□ -0.057e-9■■□□□ 13.9
FDPS-210ENST00000474345 RPS3P23396 243 aaKnown RBP eCLIP14.87□□□□□ -0.031e-7■■□□□ 13.7
FDPS-210ENST00000474345 ZC3H11AO75152 810 aaKnown RBP eCLIP16.51■□□□□ 0.239e-6■■□□□ 13.5
FDPS-210ENST00000474345 HNRNPKP61978 463 aaKnown RBP eCLIP15.04■□□□□ -01e-6■■□□□ 13.3
FDPS-210ENST00000474345 FUSP35637 526 aaKnown RBP eCLIP10.01□□□□□ -0.818e-9■■□□□ 13.1
FDPS-210ENST00000474345 SF3A3Q12874 501 aaKnown RBP eCLIP13.98□□□□□ -0.177e-15■■□□□ 13
FDPS-210ENST00000474345 SND1Q7KZF4 910 aaKnown RBP eCLIP15.73■□□□□ 0.112e-8■■□□□ 12.9
FDPS-210ENST00000474345 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP12.98□□□□□ -0.337e-12■■□□□ 12.7
FDPS-210ENST00000474345 RBM15Q96T37 977 aaKnown RBP eCLIP15.27■□□□□ 0.043e-6■■□□□ 12.7
FDPS-210ENST00000474345 TAF15Q92804 592 aaKnown RBP eCLIP12.2□□□□□ -0.462e-8■■□□□ 12.7
FDPS-210ENST00000474345 CDC40O60508 579 aaKnown RBP eCLIP13.81□□□□□ -0.24e-6■■□□□ 12.3
FDPS-210ENST00000474345 PPIGQ13427 754 aaKnown RBP eCLIP16.94■□□□□ 0.34e-7■■□□□ 11.4
FDPS-210ENST00000474345 DDX3XO00571 662 aaKnown RBP eCLIP15.85■□□□□ 0.139e-23■□□□□ 11.3
FDPS-210ENST00000474345 U2AF2P26368 475 aaKnown RBP eCLIP17.2■□□□□ 0.344e-6■□□□□ 10.9
FDPS-210ENST00000474345 EWSR1Q01844 656 aaKnown RBP eCLIP11.37□□□□□ -0.595e-10■□□□□ 10.8
FDPS-210ENST00000474345 DDX24Q9GZR7 859 aaKnown RBP eCLIP18.36■□□□□ 0.535e-6■□□□□ 10.7
FDPS-210ENST00000474345 GPKOWQ92917 476 aaPredicted RBP eCLIP17.49■□□□□ 0.393e-6■□□□□ 10.1
FDPS-210ENST00000474345 GRWD1Q9BQ67 446 aaKnown RBP eCLIP22.91■■□□□ 1.261e-9■□□□□ 9.9
FDPS-210ENST00000474345 PRPF4O43172 522 aaKnown RBP eCLIP14.35□□□□□ -0.119e-9■□□□□ 9.9
FDPS-210ENST00000474345 PCBP2Q15366 365 aaKnown RBP eCLIP14.49□□□□□ -0.093e-7■□□□□ 9.9
FDPS-210ENST00000474345 KHSRPQ92945 711 aaKnown RBP eCLIP15.97■□□□□ 0.155e-9■□□□□ 9.8
FDPS-210ENST00000474345 PCBP1Q15365 356 aaKnown RBP eCLIP16.74■□□□□ 0.274e-7■□□□□ 9.7
FDPS-210ENST00000474345 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP20.33■□□□□ 0.851e-8■□□□□ 9.7
FDPS-210ENST00000474345 CSTF2P33240 577 aaKnown RBP eCLIP14.67□□□□□ -0.067e-6■□□□□ 9.5
FDPS-210ENST00000474345 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP15.91■□□□□ 0.148e-10■□□□□ 9.3
FDPS-210ENST00000474345 RBFOX2O43251 390 aaKnown RBP eCLIP11.94□□□□□ -0.51e-10■□□□□ 8.7
FDPS-210ENST00000474345 EIF3DO15371 548 aaKnown RBP eCLIP16.57■□□□□ 0.241e-8■□□□□ 8.3
FDPS-210ENST00000474345 ZRANB2O95218 330 aaKnown RBP eCLIP15.46■□□□□ 0.072e-6■□□□□ 8.1
FDPS-210ENST00000474345 NPM1P06748 294 aaKnown RBP eCLIP24.58■■□□□ 1.533e-6■□□□□ 8.1
FDPS-210ENST00000474345 NOLC1Q14978 699 aaKnown RBP eCLIP16.58■□□□□ 0.245e-6■□□□□ 8.1
FDPS-210ENST00000474345 GNL3Q9BVP2 549 aaKnown RBP eCLIP18.02■□□□□ 0.489e-12■□□□□ 8.1
Retrieved 51 of 51 RNA–protein pairs in 7.7 ms