RNA–Protein interactions for RNA: ENST00000472625.1

XRN1-209, Transcript of 5'-3' exoribonuclease 1, humanhuman

TSL 5

Gene XRN1, Length 420 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
XRN1-209ENST00000472625 AEBP2Q6ZN18 517 aaPredicted RBP16.08■□□□□ 0.16
XRN1-209ENST00000472625 CHIC1Q5VXU3 224 aa15.32■□□□□ 0.04
XRN1-209ENST00000472625 SENP3Q9H4L4 574 aaPredicted RBP13.59□□□□□ -0.23
XRN1-209ENST00000472625 PHF23Q9BUL5 403 aaPredicted RBP13.5□□□□□ -0.25
XRN1-209ENST00000472625 FOXD1Q16676 465 aa12.72□□□□□ -0.37
XRN1-209ENST00000472625 POTEDQ86YR6 584 aa12.61□□□□□ -0.39
XRN1-209ENST00000472625 PLPPR3Q6T4P5 718 aa12.27□□□□□ -0.45
XRN1-209ENST00000472625 PPP6R1Q9UPN7 881 aa12.03□□□□□ -0.48
XRN1-209ENST00000472625 ADRA2BP18089 450 aa12.01□□□□□ -0.49
XRN1-209ENST00000472625 PIAS4Q8N2W9 510 aaPredicted RBP11.92□□□□□ -0.5
XRN1-209ENST00000472625 MSH5O43196 834 aa11.76□□□□□ -0.53
XRN1-209ENST00000472625 MAPK8IP2Q13387 824 aaPredicted RBP11.01□□□□□ -0.65
XRN1-209ENST00000472625 SCAF1Q9H7N4 1312 aaKnown RBP10.84□□□□□ -0.67
XRN1-209ENST00000472625 PPP4R3CPQ6ZMV5 832 aa10.82□□□□□ -0.68
XRN1-209ENST00000472625 DMRT2Q9Y5R5 561 aa10.81□□□□□ -0.68
XRN1-209ENST00000472625 CNKSR2Q8WXI2 1034 aa10.54□□□□□ -0.72
XRN1-209ENST00000472625 CACNB1Q02641 598 aaPredicted RBP10.52□□□□□ -0.73
XRN1-209ENST00000472625 DCAF8L1A6NGE4 600 aa10.45□□□□□ -0.74
XRN1-209ENST00000472625 HOXD11P31277 338 aaPredicted RBP10.45□□□□□ -0.74
XRN1-209ENST00000472625 RNF216Q9NWF9 866 aaPredicted RBP10.4□□□□□ -0.74
XRN1-209ENST00000472625 NCBP3Q53F19 620 aaKnown RBP10.36□□□□□ -0.75
XRN1-209ENST00000472625 KCNA4P22459 653 aa10.35□□□□□ -0.75
XRN1-209ENST00000472625 NPM3O75607 178 aaKnown RBP10.3□□□□□ -0.76
XRN1-209ENST00000472625 RNF39Q9H2S5 420 aa10.09□□□□□ -0.79
XRN1-209ENST00000472625 DNAJC5BQ9UF47 199 aa10.02□□□□□ -0.81
XRN1-209ENST00000472625 GRWD1Q9BQ67 446 aaKnown RBP eCLIP10□□□□□ -0.813e-6■■■□□ 15.7
XRN1-209ENST00000472625 C1QBPQ07021 282 aaKnown RBP9.89□□□□□ -0.83
XRN1-209ENST00000472625 U3KPZ7 1027 aaPredicted RBP9.83□□□□□ -0.84
XRN1-209ENST00000472625 SLC4A2P04920 1241 aa9.82□□□□□ -0.84
XRN1-209ENST00000472625 POTEHQ6S545 545 aa9.76□□□□□ -0.85
XRN1-209ENST00000472625 SLC4A1APQ9BWU0 796 aaKnown RBP9.72□□□□□ -0.85
XRN1-209ENST00000472625 SPINK5Q9NQ38 1064 aaPredicted RBP9.68□□□□□ -0.86
XRN1-209ENST00000472625 ZBTB22O15209 634 aa9.63□□□□□ -0.87
XRN1-209ENST00000472625 CAPN15O75808 1086 aa9.63□□□□□ -0.87
XRN1-209ENST00000472625 TRHP20396 242 aaPredicted RBP9.53□□□□□ -0.88
XRN1-209ENST00000472625 DSG3P32926 999 aa9.51□□□□□ -0.89
XRN1-209ENST00000472625 ABCB7O75027 752 aa9.48□□□□□ -0.89
XRN1-209ENST00000472625 MYCNP04198 464 aaPredicted RBP9.48□□□□□ -0.89
XRN1-209ENST00000472625 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP9.47□□□□□ -0.89
XRN1-209ENST00000472625 HNRNPUL2Q1KMD3 747 aaKnown RBP9.47□□□□□ -0.89
XRN1-209ENST00000472625 FOXD4L1Q9NU39 408 aa9.47□□□□□ -0.89
XRN1-209ENST00000472625 SAMD1Q6SPF0 538 aaPredicted RBP9.46□□□□□ -0.9
XRN1-209ENST00000472625 APLP2Q06481 763 aa9.43□□□□□ -0.9
XRN1-209ENST00000472625 CSRNP3Q8WYN3 585 aa9.42□□□□□ -0.9
XRN1-209ENST00000472625 ZNF219Q9P2Y4 722 aaPredicted RBP9.42□□□□□ -0.9
XRN1-209ENST00000472625 ATF5Q9Y2D1 282 aaPredicted RBP9.36□□□□□ -0.91
XRN1-209ENST00000472625 EHMT2Q96KQ7 1210 aa9.33□□□□□ -0.92
XRN1-209ENST00000472625 POLA2Q14181 598 aa9.26□□□□□ -0.93
XRN1-209ENST00000472625 ATXN8OSP0DMR3 200 aa9.13□□□□□ -0.95
XRN1-209ENST00000472625 OSCARQ8IYS5 282 aa9.01□□□□□ -0.97
XRN1-209ENST00000472625 RBM42Q9BTD8 480 aaKnown RBP9□□□□□ -0.97
XRN1-209ENST00000472625 ZBTB12Q9Y330 459 aaPredicted RBP8.99□□□□□ -0.97
XRN1-209ENST00000472625 MKRN4PQ13434 485 aaPredicted RBP8.9□□□□□ -0.98
XRN1-209ENST00000472625 FBLN2P98095 1184 aa8.87□□□□□ -0.99
XRN1-209ENST00000472625 AKT1S1Q96B36 256 aa8.84□□□□□ -0.99
XRN1-209ENST00000472625 CHRDL2Q6WN34 429 aa8.82□□□□□ -1
XRN1-209ENST00000472625 REM2Q8IYK8 340 aaPredicted RBP8.81□□□□□ -1
XRN1-209ENST00000472625 SP7Q8TDD2 431 aaPredicted RBP8.81□□□□□ -1
XRN1-209ENST00000472625 SPDYE2BA6NHP3 402 aa8.75□□□□□ -1.01
XRN1-209ENST00000472625 PITPNM1O00562 1244 aa8.75□□□□□ -1.01
XRN1-209ENST00000472625 SPDYE6P0CI01 402 aa8.75□□□□□ -1.01
XRN1-209ENST00000472625 SPDYE2Q495Y8 402 aa8.75□□□□□ -1.01
XRN1-209ENST00000472625 ZNF692Q9BU19 519 aaPredicted RBP8.72□□□□□ -1.01
XRN1-209ENST00000472625 SSUH2Q9Y2M2 353 aa8.68□□□□□ -1.02
XRN1-209ENST00000472625 NISCHQ9Y2I1 1504 aa8.68□□□□□ -1.02
XRN1-209ENST00000472625 PIP4P2Q8N4L2 257 aa8.66□□□□□ -1.02
XRN1-209ENST00000472625 CLEC11AQ9Y240 323 aa8.64□□□□□ -1.03
XRN1-209ENST00000472625 PABPN1Q86U42 306 aaKnown RBP eCLIP8.62□□□□□ -1.03
XRN1-209ENST00000472625 FXR2P51116 673 aaKnown RBP eCLIP8.59□□□□□ -1.03
XRN1-209ENST00000472625 SPDYE1Q8NFV5 336 aaPredicted RBP8.58□□□□□ -1.04
XRN1-209ENST00000472625 SPDYE4A6NLX3 237 aa8.52□□□□□ -1.05
XRN1-209ENST00000472625 PRKAR2AP13861 404 aaKnown RBP8.51□□□□□ -1.05
XRN1-209ENST00000472625 CHADLQ6NUI6 762 aa8.5□□□□□ -1.05
XRN1-209ENST00000472625 HAX1O00165 279 aa8.49□□□□□ -1.05
XRN1-209ENST00000472625 PROM2Q8N271 834 aa8.49□□□□□ -1.05
XRN1-209ENST00000472625 PRR29P0C7W0 189 aa8.47□□□□□ -1.05
XRN1-209ENST00000472625 PLSCR2Q9NRY7 297 aa8.44□□□□□ -1.06
XRN1-209ENST00000472625 EVX2Q03828 476 aa8.43□□□□□ -1.06
XRN1-209ENST00000472625 FKBP8Q14318 412 aa8.39□□□□□ -1.07
XRN1-209ENST00000472625 C19orf67A6NJJ6 358 aa8.32□□□□□ -1.08
XRN1-209ENST00000472625 CREBZFQ9NS37 354 aa8.31□□□□□ -1.08
XRN1-209ENST00000472625 FARP1Q9Y4F1 1045 aaPredicted RBP8.31□□□□□ -1.08
XRN1-209ENST00000472625 STAG3Q9UJ98 1225 aa8.3□□□□□ -1.08
XRN1-209ENST00000472625 LHX8Q68G74 356 aa8.27□□□□□ -1.09
XRN1-209ENST00000472625 CD44P16070 742 aaKnown RBP8.25□□□□□ -1.09
XRN1-209ENST00000472625 GABBR2O75899 941 aa8.18□□□□□ -1.1
XRN1-209ENST00000472625 MNX1P50219 401 aaPredicted RBP8.17□□□□□ -1.1
XRN1-209ENST00000472625 ZRANB1Q9UGI0 708 aa8.16□□□□□ -1.1
XRN1-209ENST00000472625 MIER1Q8N108 512 aa8.1□□□□□ -1.11
XRN1-209ENST00000472625 PHF12Q96QT6 1004 aa8.1□□□□□ -1.11
XRN1-209ENST00000472625 NPM1P06748 294 aaKnown RBP eCLIP8.09□□□□□ -1.11
XRN1-209ENST00000472625 ZNF579Q8NAF0 562 aaKnown RBP8.08□□□□□ -1.12
XRN1-209ENST00000472625 PLCD3Q8N3E9 789 aa8.07□□□□□ -1.12
XRN1-209ENST00000472625 TSPYL2Q9H2G4 693 aaPredicted RBP8.06□□□□□ -1.12
XRN1-209ENST00000472625 GALR2O43603 387 aaPredicted RBP8.05□□□□□ -1.12
XRN1-209ENST00000472625 PAK3O75914 559 aaPredicted RBP8.05□□□□□ -1.12
XRN1-209ENST00000472625 POTEIP0CG38 1075 aa8.05□□□□□ -1.12
XRN1-209ENST00000472625 PLEKHG5O94827 1062 aa8.02□□□□□ -1.13
XRN1-209ENST00000472625 VASPP50552 380 aaPredicted RBP8.02□□□□□ -1.13
XRN1-209ENST00000472625 RASEFQ8IZ41 740 aa8.01□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms