RNA–Protein interactions for RNA: ENST00000472476.5

TARDBP-204, Transcript of TAR DNA binding protein, humanhuman

TSL 5

Gene TARDBP, Length 1,001 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TARDBP-204ENST00000472476 DDX3XO00571 662 aaKnown RBP eCLIP14.2□□□□□ -0.141e-28■■■■■ 35.7
TARDBP-204ENST00000472476 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP24.2■■□□□ 1.471e-7■■■■■ 34.9
TARDBP-204ENST00000472476 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP12.77□□□□□ -0.375e-9■■■■■ 33.2
TARDBP-204ENST00000472476 LIN28BQ6ZN17 250 aaKnown RBP eCLIP16.77■□□□□ 0.281e-28■■■■■ 32.6
TARDBP-204ENST00000472476 RBM22Q9NW64 420 aaKnown RBP eCLIP14.14□□□□□ -0.152e-7■■■■■ 31.6
TARDBP-204ENST00000472476 SMNDC1O75940 238 aaKnown RBP eCLIP12.93□□□□□ -0.342e-8■■■■■ 29.2
TARDBP-204ENST00000472476 DDX6P26196 483 aaKnown RBP eCLIP15.46■□□□□ 0.071e-7■■■■□ 26.6
TARDBP-204ENST00000472476 ZNF800Q2TB10 664 aaPredicted RBP eCLIP13.59□□□□□ -0.233e-6■■■■□ 22.6
TARDBP-204ENST00000472476 UTP3Q9NQZ2 479 aaKnown RBP eCLIP15.08■□□□□ 01e-7■■■■□ 22.4
TARDBP-204ENST00000472476 RBM15Q96T37 977 aaKnown RBP eCLIP14.47□□□□□ -0.099e-7■■■□□ 18.3
TARDBP-204ENST00000472476 NCBP2P52298 156 aaKnown RBP eCLIP12.77□□□□□ -0.371e-12■■■□□ 17.9
TARDBP-204ENST00000472476 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP23.01■■□□□ 1.271e-6■■■□□ 15.4
TARDBP-204ENST00000472476 U2AF1Q01081 240 aaKnown RBP eCLIP19.19■□□□□ 0.663e-7■■■□□ 15.3
TARDBP-204ENST00000472476 UPF1Q92900 1129 aaKnown RBP eCLIP22.02■■□□□ 1.122e-11■■■□□ 15.1
TARDBP-204ENST00000472476 AQRO60306 1485 aaKnown RBP eCLIP26.81■■□□□ 1.882e-7■■□□□ 14.3
TARDBP-204ENST00000472476 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP19.98■□□□□ 0.793e-7■■□□□ 13.6
TARDBP-204ENST00000472476 GRWD1Q9BQ67 446 aaKnown RBP eCLIP22.64■■□□□ 1.212e-9■■□□□ 13.4
TARDBP-204ENST00000472476 HNRNPMP52272 730 aaKnown RBP eCLIP23.5■■□□□ 1.357e-7■■□□□ 12.4
TARDBP-204ENST00000472476 BUD13Q9BRD0 619 aaKnown RBP eCLIP17.22■□□□□ 0.351e-11■■□□□ 11.7
TARDBP-204ENST00000472476 FXR2P51116 673 aaKnown RBP eCLIP15.72■□□□□ 0.112e-7■■□□□ 11.5
TARDBP-204ENST00000472476 SRSF1Q07955 248 aaKnown RBP eCLIP14.48□□□□□ -0.094e-8■□□□□ 11.3
TARDBP-204ENST00000472476 WRNQ14191 1432 aaPredicted RBP eCLIP26.01■■□□□ 1.756e-7■□□□□ 11.3
TARDBP-204ENST00000472476 RPS3P23396 243 aaKnown RBP eCLIP13.59□□□□□ -0.233e-8■□□□□ 11
TARDBP-204ENST00000472476 SF3B4Q15427 424 aaKnown RBP eCLIP13.04□□□□□ -0.322e-7■□□□□ 10.4
TARDBP-204ENST00000472476 KHSRPQ92945 711 aaKnown RBP eCLIP16.86■□□□□ 0.291e-9■□□□□ 10.4
TARDBP-204ENST00000472476 G3BP1Q13283 466 aaKnown RBP eCLIP17.65■□□□□ 0.425e-9■□□□□ 10.1
TARDBP-204ENST00000472476 U2AF2P26368 475 aaKnown RBP eCLIP15.64■□□□□ 0.093e-10■□□□□ 10
TARDBP-204ENST00000472476 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP13.81□□□□□ -0.21e-6■□□□□ 9.2
TARDBP-204ENST00000472476 ZNF622Q969S3 477 aaKnown RBP eCLIP19.38■□□□□ 0.693e-23■□□□□ 9.1
TARDBP-204ENST00000472476 PPIGQ13427 754 aaKnown RBP eCLIP17.13■□□□□ 0.336e-7■□□□□ 8.8
TARDBP-204ENST00000472476 DDX24Q9GZR7 859 aaKnown RBP eCLIP17.24■□□□□ 0.352e-12■□□□□ 8.7
TARDBP-204ENST00000472476 ILF3Q12906 894 aaKnown RBP eCLIP14.31□□□□□ -0.126e-6■□□□□ 8.6
Retrieved 32 of 32 RNA–protein pairs in 7.9 ms