RNA–Protein interactions for RNA: ENST00000471496.5

LINC00888-202, long intergenic non-protein coding RNA 888, humanhuman

TSL 3 BASIC

Gene LINC00888, Length 1,490 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00888-202ENST00000471496 AEBP2Q6ZN18 517 aaPredicted RBP33.85■■■■□ 3.01
LINC00888-202ENST00000471496 CHIC1Q5VXU3 224 aa32.61■■■□□ 2.81
LINC00888-202ENST00000471496 NISCHQ9Y2I1 1504 aa30.23■■■□□ 2.43
LINC00888-202ENST00000471496 SENP3Q9H4L4 574 aaPredicted RBP29.02■■■□□ 2.24
LINC00888-202ENST00000471496 PHF23Q9BUL5 403 aaPredicted RBP28.59■■■□□ 2.17
LINC00888-202ENST00000471496 CCDC180Q9P1Z9 1646 aa26.88■■□□□ 1.89
LINC00888-202ENST00000471496 FOXD1Q16676 465 aa26.87■■□□□ 1.89
LINC00888-202ENST00000471496 PLPPR3Q6T4P5 718 aa26.28■■□□□ 1.8
LINC00888-202ENST00000471496 ABCC9O60706 1549 aa26.23■■□□□ 1.79
LINC00888-202ENST00000471496 PPP6R1Q9UPN7 881 aa25.32■■□□□ 1.64
LINC00888-202ENST00000471496 ADRA2BP18089 450 aa25.28■■□□□ 1.64
LINC00888-202ENST00000471496 RB1CC1Q8TDY2 1594 aa25.25■■□□□ 1.63
LINC00888-202ENST00000471496 PIAS4Q8N2W9 510 aaPredicted RBP25.24■■□□□ 1.63
LINC00888-202ENST00000471496 NACADO15069 1562 aa25.23■■□□□ 1.63
LINC00888-202ENST00000471496 ZCCHC6Q5VYS8 1495 aaKnown RBP25.2■■□□□ 1.62
LINC00888-202ENST00000471496 MSH5O43196 834 aa25.18■■□□□ 1.62
LINC00888-202ENST00000471496 DCAF8L2P0C7V8 631 aa25.12■■□□□ 1.61
LINC00888-202ENST00000471496 MYO15BQ96JP2 1530 aa25.11■■□□□ 1.61
LINC00888-202ENST00000471496 DCAF1Q9Y4B6 1507 aa25.02■■□□□ 1.6
LINC00888-202ENST00000471496 UNC13AQ9UPW8 1703 aa24.8■■□□□ 1.56
LINC00888-202ENST00000471496 BICRAQ9NZM4 1560 aa24.57■■□□□ 1.52
LINC00888-202ENST00000471496 SCRIBQ14160 1630 aa24.5■■□□□ 1.51
LINC00888-202ENST00000471496 PABPN1Q86U42 306 aaKnown RBP eCLIP24.5■■□□□ 1.51
LINC00888-202ENST00000471496 SHROOM4Q9ULL8 1493 aa24.22■■□□□ 1.47
LINC00888-202ENST00000471496 DNAJC5BQ9UF47 199 aa24.1■■□□□ 1.45
LINC00888-202ENST00000471496 EIF4G1Q04637 1599 aaKnown RBP23.86■■□□□ 1.41
LINC00888-202ENST00000471496 POTEDQ86YR6 584 aa23.84■■□□□ 1.41
LINC00888-202ENST00000471496 CC2D2AQ9P2K1 1620 aa23.77■■□□□ 1.39
LINC00888-202ENST00000471496 CECR2Q9BXF3 1484 aa23.57■■□□□ 1.36
LINC00888-202ENST00000471496 SMARCA4P51532 1647 aa23.47■■□□□ 1.35
LINC00888-202ENST00000471496 BAZ1AQ9NRL2 1556 aaPredicted RBP23.41■■□□□ 1.34
LINC00888-202ENST00000471496 SCAF1Q9H7N4 1312 aaKnown RBP23.36■■□□□ 1.33
LINC00888-202ENST00000471496 MROH2BQ7Z745 1585 aa23.32■■□□□ 1.32
LINC00888-202ENST00000471496 ATAD2BQ9ULI0 1458 aa23.31■■□□□ 1.32
LINC00888-202ENST00000471496 NCAPD3P42695 1498 aa23.29■■□□□ 1.32
LINC00888-202ENST00000471496 SMARCA2P51531 1590 aa23.26■■□□□ 1.31
LINC00888-202ENST00000471496 PEG3Q9GZU2 1588 aa23.25■■□□□ 1.31
LINC00888-202ENST00000471496 HMGXB3Q12766 1538 aa23.18■■□□□ 1.3
LINC00888-202ENST00000471496 WIZO95785 1651 aa23.08■■□□□ 1.29
LINC00888-202ENST00000471496 BAZ1BQ9UIG0 1483 aaKnown RBP23.08■■□□□ 1.29
LINC00888-202ENST00000471496 MAPK8IP2Q13387 824 aaPredicted RBP23.08■■□□□ 1.29
LINC00888-202ENST00000471496 RSF1Q96T23 1441 aaPredicted RBP23.04■■□□□ 1.28
LINC00888-202ENST00000471496 DMRT2Q9Y5R5 561 aa23.03■■□□□ 1.28
LINC00888-202ENST00000471496 PPP4R3CPQ6ZMV5 832 aa23.01■■□□□ 1.27
LINC00888-202ENST00000471496 TOP2AP11388 1531 aaKnown RBP22.8■■□□□ 1.24
LINC00888-202ENST00000471496 NESP48681 1621 aa22.75■■□□□ 1.23
LINC00888-202ENST00000471496 LAMC3Q9Y6N6 1575 aa22.67■■□□□ 1.22
LINC00888-202ENST00000471496 CADPSQ9ULU8 1353 aa22.59■■□□□ 1.21
LINC00888-202ENST00000471496 CNKSR2Q8WXI2 1034 aa22.56■■□□□ 1.2
LINC00888-202ENST00000471496 ERCC6Q03468 1493 aa22.55■■□□□ 1.2
LINC00888-202ENST00000471496 CCDC88BA6NC98 1476 aa22.53■■□□□ 1.2
LINC00888-202ENST00000471496 KIF21AQ7Z4S6 1674 aa22.51■■□□□ 1.19
LINC00888-202ENST00000471496 CFTRP13569 1480 aa22.48■■□□□ 1.19
LINC00888-202ENST00000471496 PDS5BQ9NTI5 1447 aa22.46■■□□□ 1.19
LINC00888-202ENST00000471496 THOC2Q8NI27 1593 aaKnown RBP22.41■■□□□ 1.18
LINC00888-202ENST00000471496 SUPT5HO00267 1087 aaKnown RBP22.39■■□□□ 1.17
LINC00888-202ENST00000471496 PRDM2Q13029 1718 aa22.38■■□□□ 1.17
LINC00888-202ENST00000471496 NCBP3Q53F19 620 aaKnown RBP22.35■■□□□ 1.17
LINC00888-202ENST00000471496 CUX2O14529 1486 aa22.34■■□□□ 1.17
LINC00888-202ENST00000471496 FANCD2Q9BXW9 1451 aa22.33■■□□□ 1.17
LINC00888-202ENST00000471496 HOXD11P31277 338 aaPredicted RBP22.32■■□□□ 1.16
LINC00888-202ENST00000471496 CEP164Q9UPV0 1460 aa22.29■■□□□ 1.16
LINC00888-202ENST00000471496 RNF216Q9NWF9 866 aaPredicted RBP22.28■■□□□ 1.16
LINC00888-202ENST00000471496 MRC2Q9UBG0 1479 aa22.26■■□□□ 1.15
LINC00888-202ENST00000471496 WDR62O43379 1518 aa22.22■■□□□ 1.15
LINC00888-202ENST00000471496 URB2Q14146 1524 aaKnown RBP22.15■■□□□ 1.14
LINC00888-202ENST00000471496 DCAF8L1A6NGE4 600 aa22.01■■□□□ 1.11
LINC00888-202ENST00000471496 TOPBP1Q92547 1522 aa22■■□□□ 1.11
LINC00888-202ENST00000471496 DNMBPQ6XZF7 1577 aa21.98■■□□□ 1.11
LINC00888-202ENST00000471496 ABCC8Q09428 1581 aa21.96■■□□□ 1.11
LINC00888-202ENST00000471496 NPM3O75607 178 aaKnown RBP21.88■■□□□ 1.09
LINC00888-202ENST00000471496 CUX1P39880 1505 aa21.87■■□□□ 1.09
LINC00888-202ENST00000471496 POLA1P09884 1462 aaPredicted RBP21.82■■□□□ 1.08
LINC00888-202ENST00000471496 IFT140Q96RY7 1462 aa21.82■■□□□ 1.08
LINC00888-202ENST00000471496 TARBP1Q13395 1621 aaKnown RBP21.81■■□□□ 1.08
LINC00888-202ENST00000471496 ZNF608Q9ULD9 1512 aaPredicted RBP21.77■■□□□ 1.08
LINC00888-202ENST00000471496 FGD5Q6ZNL6 1462 aa21.76■■□□□ 1.07
LINC00888-202ENST00000471496 RAD54L2Q9Y4B4 1467 aa21.72■■□□□ 1.07
LINC00888-202ENST00000471496 KCNA4P22459 653 aa21.71■■□□□ 1.07
LINC00888-202ENST00000471496 BIVM-ERCC5R4GMW8 1640 aa21.7■■□□□ 1.06
LINC00888-202ENST00000471496 SYNJ1O43426 1573 aa21.69■■□□□ 1.06
LINC00888-202ENST00000471496 EIF4G3O43432 1585 aaKnown RBP21.69■■□□□ 1.06
LINC00888-202ENST00000471496 SOGA1O94964 1423 aa21.69■■□□□ 1.06
LINC00888-202ENST00000471496 TOP2BQ02880 1626 aa21.68■■□□□ 1.06
LINC00888-202ENST00000471496 WRNQ14191 1432 aaPredicted RBP eCLIP21.68■■□□□ 1.06
LINC00888-202ENST00000471496 WDR97A6NE52 1622 aa21.65■■□□□ 1.06
LINC00888-202ENST00000471496 DNAJC5Q9H3Z4 198 aa21.63■■□□□ 1.05
LINC00888-202ENST00000471496 AQRO60306 1485 aaKnown RBP eCLIP21.62■■□□□ 1.055e-6■■□□□ 14.3
LINC00888-202ENST00000471496 TDRD9Q8NDG6 1382 aaKnown RBP21.58■■□□□ 1.04
LINC00888-202ENST00000471496 ABCA10Q8WWZ4 1543 aa21.56■■□□□ 1.04
LINC00888-202ENST00000471496 ABCA5Q8WWZ7 1642 aa21.51■■□□□ 1.03
LINC00888-202ENST00000471496 PBRM1Q86U86 1689 aa21.46■■□□□ 1.03
LINC00888-202ENST00000471496 GAPVD1Q14C86 1478 aa21.45■■□□□ 1.02
LINC00888-202ENST00000471496 GRIN2BQ13224 1484 aa21.44■■□□□ 1.02
LINC00888-202ENST00000471496 CHD1O14646 1710 aa21.44■■□□□ 1.02
LINC00888-202ENST00000471496 RNF39Q9H2S5 420 aa21.43■■□□□ 1.02
LINC00888-202ENST00000471496 SNAPC4Q5SXM2 1469 aa21.42■■□□□ 1.02
LINC00888-202ENST00000471496 OSCARQ8IYS5 282 aa21.39■■□□□ 1.01
LINC00888-202ENST00000471496 MAGI1Q96QZ7 1491 aaPredicted RBP21.38■■□□□ 1.01
LINC00888-202ENST00000471496 CACNB1Q02641 598 aaPredicted RBP21.31■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms