RNA–Protein interactions for RNA: ENST00000470463.1

SND1-208, Transcript of staphylococcal nuclease and tudor domain containing 1, humanhuman

TSL 4

Gene SND1, Length 530 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SND1-208ENST00000470463 NISCHQ9Y2I1 1504 aa24.68■■□□□ 1.54
SND1-208ENST00000470463 CCDC180Q9P1Z9 1646 aa21.58■■□□□ 1.04
SND1-208ENST00000470463 ABCC9O60706 1549 aa21■□□□□ 0.95
SND1-208ENST00000470463 ZCCHC6Q5VYS8 1495 aaKnown RBP20.75■□□□□ 0.91
SND1-208ENST00000470463 DCAF1Q9Y4B6 1507 aa20.53■□□□□ 0.88
SND1-208ENST00000470463 MYO15BQ96JP2 1530 aa20.32■□□□□ 0.84
SND1-208ENST00000470463 DCAF8L2P0C7V8 631 aa20.25■□□□□ 0.83
SND1-208ENST00000470463 NACADO15069 1562 aa20.1■□□□□ 0.81
SND1-208ENST00000470463 DNAJC5BQ9UF47 199 aa20.08■□□□□ 0.81
SND1-208ENST00000470463 SHROOM4Q9ULL8 1493 aa19.96■□□□□ 0.79
SND1-208ENST00000470463 RB1CC1Q8TDY2 1594 aa19.89■□□□□ 0.77
SND1-208ENST00000470463 SCRIBQ14160 1630 aa19.67■□□□□ 0.74
SND1-208ENST00000470463 PABPN1Q86U42 306 aaKnown RBP eCLIP19.61■□□□□ 0.73
SND1-208ENST00000470463 UNC13AQ9UPW8 1703 aa19.31■□□□□ 0.68
SND1-208ENST00000470463 SUPT5HO00267 1087 aaKnown RBP19.3■□□□□ 0.68
SND1-208ENST00000470463 BICRAQ9NZM4 1560 aa19.15■□□□□ 0.66
SND1-208ENST00000470463 RSF1Q96T23 1441 aaPredicted RBP19.13■□□□□ 0.65
SND1-208ENST00000470463 BAZ1AQ9NRL2 1556 aaPredicted RBP19.1■□□□□ 0.65
SND1-208ENST00000470463 CECR2Q9BXF3 1484 aa19.05■□□□□ 0.64
SND1-208ENST00000470463 MROH2BQ7Z745 1585 aa18.98■□□□□ 0.63
SND1-208ENST00000470463 SMARCA4P51532 1647 aa18.94■□□□□ 0.62
SND1-208ENST00000470463 CC2D2AQ9P2K1 1620 aa18.86■□□□□ 0.61
SND1-208ENST00000470463 DNAJC5Q9H3Z4 198 aa18.82■□□□□ 0.6
SND1-208ENST00000470463 WIZO95785 1651 aa18.8■□□□□ 0.6
SND1-208ENST00000470463 PEG3Q9GZU2 1588 aa18.79■□□□□ 0.6
SND1-208ENST00000470463 EIF4G1Q04637 1599 aaKnown RBP18.76■□□□□ 0.59
SND1-208ENST00000470463 TOP2AP11388 1531 aaKnown RBP18.74■□□□□ 0.59
SND1-208ENST00000470463 SMARCA2P51531 1590 aa18.72■□□□□ 0.59
SND1-208ENST00000470463 ATAD2BQ9ULI0 1458 aa18.63■□□□□ 0.57
SND1-208ENST00000470463 BAZ1BQ9UIG0 1483 aaKnown RBP18.55■□□□□ 0.56
SND1-208ENST00000470463 CHIC1Q5VXU3 224 aa18.55■□□□□ 0.56
SND1-208ENST00000470463 NCAPD3P42695 1498 aa18.52■□□□□ 0.56
SND1-208ENST00000470463 HMGXB3Q12766 1538 aa18.52■□□□□ 0.56
SND1-208ENST00000470463 CCDC88BA6NC98 1476 aa18.48■□□□□ 0.55
SND1-208ENST00000470463 CUX2O14529 1486 aa18.29■□□□□ 0.52
SND1-208ENST00000470463 TRIM41Q8WV44 630 aa18.26■□□□□ 0.51
SND1-208ENST00000470463 ERCC6Q03468 1493 aa18.23■□□□□ 0.51
SND1-208ENST00000470463 CFTRP13569 1480 aa18.1■□□□□ 0.49
SND1-208ENST00000470463 WRNQ14191 1432 aaPredicted RBP eCLIP18.05■□□□□ 0.48
SND1-208ENST00000470463 CADPSQ9ULU8 1353 aa18.04■□□□□ 0.48
SND1-208ENST00000470463 ABCC8Q09428 1581 aa18.02■□□□□ 0.48
SND1-208ENST00000470463 PRDM2Q13029 1718 aa18.01■□□□□ 0.47
SND1-208ENST00000470463 EEA1Q15075 1411 aa17.95■□□□□ 0.46
SND1-208ENST00000470463 LAMC3Q9Y6N6 1575 aa17.9■□□□□ 0.46
SND1-208ENST00000470463 TOP2BQ02880 1626 aa17.89■□□□□ 0.45
SND1-208ENST00000470463 NESP48681 1621 aa17.87■□□□□ 0.45
SND1-208ENST00000470463 SYNJ1O43426 1573 aa17.87■□□□□ 0.45
SND1-208ENST00000470463 BIVM-ERCC5R4GMW8 1640 aa17.87■□□□□ 0.45
SND1-208ENST00000470463 PDS5BQ9NTI5 1447 aa17.81■□□□□ 0.44
SND1-208ENST00000470463 FANCD2Q9BXW9 1451 aa17.8■□□□□ 0.44
SND1-208ENST00000470463 FAM9AQ8IZU1 332 aaPredicted RBP17.76■□□□□ 0.43
SND1-208ENST00000470463 CUX1P39880 1505 aa17.76■□□□□ 0.43
SND1-208ENST00000470463 LOC105371045A0A1W2PR82 267 aa17.73■□□□□ 0.43
SND1-208ENST00000470463 SOGA1O94964 1423 aa17.72■□□□□ 0.43
SND1-208ENST00000470463 CSRNP3Q8WYN3 585 aa17.72■□□□□ 0.43
SND1-208ENST00000470463 CEP164Q9UPV0 1460 aa17.71■□□□□ 0.43
SND1-208ENST00000470463 DNMBPQ6XZF7 1577 aa17.67■□□□□ 0.42
SND1-208ENST00000470463 THOC2Q8NI27 1593 aaKnown RBP17.66■□□□□ 0.42
SND1-208ENST00000470463 KIF27Q86VH2 1401 aa17.64■□□□□ 0.41
SND1-208ENST00000470463 GOLGA3Q08378 1498 aa17.6■□□□□ 0.41
SND1-208ENST00000470463 TOPBP1Q92547 1522 aa17.6■□□□□ 0.41
SND1-208ENST00000470463 KIF21BO75037 1637 aa17.59■□□□□ 0.41
SND1-208ENST00000470463 RUSC2Q8N2Y8 1516 aa17.59■□□□□ 0.41
SND1-208ENST00000470463 FGD5Q6ZNL6 1462 aa17.59■□□□□ 0.41
SND1-208ENST00000470463 OSCARQ8IYS5 282 aa17.59■□□□□ 0.41
SND1-208ENST00000470463 TNIKQ9UKE5 1360 aa17.56■□□□□ 0.4
SND1-208ENST00000470463 MRC2Q9UBG0 1479 aa17.55■□□□□ 0.4
SND1-208ENST00000470463 URB2Q14146 1524 aaKnown RBP17.52■□□□□ 0.39
SND1-208ENST00000470463 ERICH3Q5RHP9 1530 aa17.52■□□□□ 0.39
SND1-208ENST00000470463 KIF21AQ7Z4S6 1674 aa17.52■□□□□ 0.39
SND1-208ENST00000470463 ABCA10Q8WWZ4 1543 aa17.51■□□□□ 0.39
SND1-208ENST00000470463 POLA1P09884 1462 aaPredicted RBP17.5■□□□□ 0.39
SND1-208ENST00000470463 PRXQ9BXM0 1461 aa17.48■□□□□ 0.39
SND1-208ENST00000470463 UBTFP17480 764 aaKnown RBP17.47■□□□□ 0.39
SND1-208ENST00000470463 WDR62O43379 1518 aa17.45■□□□□ 0.38
SND1-208ENST00000470463 EHMT2Q96KQ7 1210 aa17.4■□□□□ 0.38
SND1-208ENST00000470463 IGF1RP08069 1367 aa17.4■□□□□ 0.38
SND1-208ENST00000470463 CEP162Q5TB80 1403 aa17.39■□□□□ 0.38
SND1-208ENST00000470463 RAPGEF2Q9Y4G8 1499 aa17.39■□□□□ 0.37
SND1-208ENST00000470463 RAD54L2Q9Y4B4 1467 aa17.37■□□□□ 0.37
SND1-208ENST00000470463 WDR97A6NE52 1622 aa17.37■□□□□ 0.37
SND1-208ENST00000470463 CUL7Q14999 1698 aa17.34■□□□□ 0.37
SND1-208ENST00000470463 CARMIL1Q5VZK9 1371 aa17.34■□□□□ 0.37
SND1-208ENST00000470463 IFT140Q96RY7 1462 aa17.32■□□□□ 0.36
SND1-208ENST00000470463 TARBP1Q13395 1621 aaKnown RBP17.31■□□□□ 0.36
SND1-208ENST00000470463 ABCA5Q8WWZ7 1642 aa17.31■□□□□ 0.36
SND1-208ENST00000470463 GAPVD1Q14C86 1478 aa17.3■□□□□ 0.36
SND1-208ENST00000470463 CLIP1P30622 1438 aa17.28■□□□□ 0.36
SND1-208ENST00000470463 TDRD9Q8NDG6 1382 aaKnown RBP17.23■□□□□ 0.35
SND1-208ENST00000470463 GRIN2BQ13224 1484 aa17.18■□□□□ 0.34
SND1-208ENST00000470463 TRIM26Q12899 539 aaPredicted RBP17.17■□□□□ 0.34
SND1-208ENST00000470463 VPS8Q8N3P4 1428 aa17.16■□□□□ 0.34
SND1-208ENST00000470463 CYB5RLQ6IPT4 315 aa17.16■□□□□ 0.34
SND1-208ENST00000470463 FHAD1B1AJZ9 1412 aa17.15■□□□□ 0.34
SND1-208ENST00000470463 PBRM1Q86U86 1689 aa17.15■□□□□ 0.34
SND1-208ENST00000470463 TRHP20396 242 aaPredicted RBP17.12■□□□□ 0.33
SND1-208ENST00000470463 AQRO60306 1485 aaKnown RBP eCLIP17.11■□□□□ 0.333e-7■■■□□ 16
SND1-208ENST00000470463 CTTNBP2Q8WZ74 1663 aa17.08■□□□□ 0.32
SND1-208ENST00000470463 ADAMTS12P58397 1594 aa17.08■□□□□ 0.32
SND1-208ENST00000470463 APLP2Q06481 763 aa17.08■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms