RNA–Protein interactions for RNA: ENST00000469108.1

CDK5-202, Transcript of cyclin dependent kinase 5, humanhuman

TSL 3

Gene CDK5, Length 582 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDK5-202ENST00000469108 NISCHQ9Y2I1 1504 aa54.91■■■■■ 6.38
CDK5-202ENST00000469108 CCDC180Q9P1Z9 1646 aa49.05■■■■■ 5.44
CDK5-202ENST00000469108 ABCC9O60706 1549 aa48.09■■■■■ 5.29
CDK5-202ENST00000469108 RB1CC1Q8TDY2 1594 aa46.22■■■■■ 4.99
CDK5-202ENST00000469108 NACADO15069 1562 aa46.09■■■■■ 4.97
CDK5-202ENST00000469108 DCAF8L2P0C7V8 631 aa45.82■■■■■ 4.93
CDK5-202ENST00000469108 MYO15BQ96JP2 1530 aa45.73■■■■■ 4.91
CDK5-202ENST00000469108 ZCCHC6Q5VYS8 1495 aaKnown RBP45.71■■■■■ 4.91
CDK5-202ENST00000469108 DCAF1Q9Y4B6 1507 aa45.46■■■■■ 4.87
CDK5-202ENST00000469108 UNC13AQ9UPW8 1703 aa45.31■■■■■ 4.84
CDK5-202ENST00000469108 BICRAQ9NZM4 1560 aa44.85■■■■■ 4.77
CDK5-202ENST00000469108 PABPN1Q86U42 306 aaKnown RBP eCLIP44.82■■■■■ 4.77
CDK5-202ENST00000469108 SCRIBQ14160 1630 aa44.66■■■■■ 4.74
CDK5-202ENST00000469108 SHROOM4Q9ULL8 1493 aa44.34■■■■■ 4.69
CDK5-202ENST00000469108 DNAJC5BQ9UF47 199 aa44.31■■■■■ 4.68
CDK5-202ENST00000469108 EIF4G1Q04637 1599 aaKnown RBP43.67■■■■■ 4.58
CDK5-202ENST00000469108 CC2D2AQ9P2K1 1620 aa43.56■■■■■ 4.56
CDK5-202ENST00000469108 CECR2Q9BXF3 1484 aa43.25■■■■■ 4.51
CDK5-202ENST00000469108 SMARCA4P51532 1647 aa42.71■■■■■ 4.43
CDK5-202ENST00000469108 BAZ1AQ9NRL2 1556 aaPredicted RBP42.6■■■■■ 4.41
CDK5-202ENST00000469108 NCAPD3P42695 1498 aa42.49■■■■■ 4.39
CDK5-202ENST00000469108 ATAD2BQ9ULI0 1458 aa42.48■■■■■ 4.39
CDK5-202ENST00000469108 SMARCA2P51531 1590 aa42.45■■■■■ 4.39
CDK5-202ENST00000469108 HMGXB3Q12766 1538 aa42.32■■■■■ 4.37
CDK5-202ENST00000469108 MROH2BQ7Z745 1585 aa42.31■■■■■ 4.36
CDK5-202ENST00000469108 PEG3Q9GZU2 1588 aa42.31■■■■■ 4.36
CDK5-202ENST00000469108 BAZ1BQ9UIG0 1483 aaKnown RBP42.12■■■■■ 4.33
CDK5-202ENST00000469108 WIZO95785 1651 aa41.9■■■■■ 4.3
CDK5-202ENST00000469108 RSF1Q96T23 1441 aaPredicted RBP41.7■■■■■ 4.27
CDK5-202ENST00000469108 NESP48681 1621 aa41.56■■■■■ 4.24
CDK5-202ENST00000469108 LAMC3Q9Y6N6 1575 aa41.47■■■■■ 4.23
CDK5-202ENST00000469108 ERCC6Q03468 1493 aa41.47■■■■■ 4.23
CDK5-202ENST00000469108 TOP2AP11388 1531 aaKnown RBP41.42■■■■■ 4.22
CDK5-202ENST00000469108 CADPSQ9ULU8 1353 aa41.2■■■■■ 4.19
CDK5-202ENST00000469108 KIF21AQ7Z4S6 1674 aa41.18■■■■■ 4.18
CDK5-202ENST00000469108 CUX2O14529 1486 aa41.15■■■■■ 4.18
CDK5-202ENST00000469108 PDS5BQ9NTI5 1447 aa41.11■■■■■ 4.17
CDK5-202ENST00000469108 THOC2Q8NI27 1593 aaKnown RBP41.08■■■■■ 4.17
CDK5-202ENST00000469108 CFTRP13569 1480 aa40.95■■■■■ 4.15
CDK5-202ENST00000469108 CCDC88BA6NC98 1476 aa40.88■■■■■ 4.13
CDK5-202ENST00000469108 PRDM2Q13029 1718 aa40.81■■■■■ 4.12
CDK5-202ENST00000469108 FANCD2Q9BXW9 1451 aa40.77■■■■■ 4.12
CDK5-202ENST00000469108 MRC2Q9UBG0 1479 aa40.76■■■■■ 4.12
CDK5-202ENST00000469108 CEP164Q9UPV0 1460 aa40.76■■■■■ 4.12
CDK5-202ENST00000469108 WDR62O43379 1518 aa40.67■■■■■ 4.1
CDK5-202ENST00000469108 URB2Q14146 1524 aaKnown RBP40.4■■■■■ 4.06
CDK5-202ENST00000469108 SUPT5HO00267 1087 aaKnown RBP40.35■■■■■ 4.05
CDK5-202ENST00000469108 TOPBP1Q92547 1522 aa40.11■■■■■ 4.01
CDK5-202ENST00000469108 DNAJC5Q9H3Z4 198 aa40.1■■■■■ 4.01
CDK5-202ENST00000469108 ABCC8Q09428 1581 aa40.07■■■■■ 4.01
CDK5-202ENST00000469108 DNMBPQ6XZF7 1577 aa40.07■■■■■ 4.01
CDK5-202ENST00000469108 IFT140Q96RY7 1462 aa39.9■■■■□ 3.98
CDK5-202ENST00000469108 TARBP1Q13395 1621 aaKnown RBP39.75■■■■□ 3.95
CDK5-202ENST00000469108 ZNF608Q9ULD9 1512 aaPredicted RBP39.75■■■■□ 3.95
CDK5-202ENST00000469108 POLA1P09884 1462 aaPredicted RBP39.75■■■■□ 3.95
CDK5-202ENST00000469108 CUX1P39880 1505 aa39.72■■■■□ 3.95
CDK5-202ENST00000469108 EIF4G3O43432 1585 aaKnown RBP39.66■■■■□ 3.94
CDK5-202ENST00000469108 FGD5Q6ZNL6 1462 aa39.62■■■■□ 3.93
CDK5-202ENST00000469108 RAD54L2Q9Y4B4 1467 aa39.55■■■■□ 3.92
CDK5-202ENST00000469108 SOGA1O94964 1423 aa39.52■■■■□ 3.92
CDK5-202ENST00000469108 AQRO60306 1485 aaKnown RBP eCLIP39.46■■■■□ 3.91
CDK5-202ENST00000469108 WDR97A6NE52 1622 aa39.43■■■■□ 3.9
CDK5-202ENST00000469108 BIVM-ERCC5R4GMW8 1640 aa39.39■■■■□ 3.9
CDK5-202ENST00000469108 TOP2BQ02880 1626 aa39.35■■■■□ 3.89
CDK5-202ENST00000469108 SYNJ1O43426 1573 aa39.33■■■■□ 3.89
CDK5-202ENST00000469108 WRNQ14191 1432 aaPredicted RBP eCLIP39.32■■■■□ 3.89
CDK5-202ENST00000469108 TDRD9Q8NDG6 1382 aaKnown RBP39.32■■■■□ 3.88
CDK5-202ENST00000469108 OSCARQ8IYS5 282 aa39.3■■■■□ 3.88
CDK5-202ENST00000469108 CHD1O14646 1710 aa39.26■■■■□ 3.87
CDK5-202ENST00000469108 ABCA10Q8WWZ4 1543 aa39.21■■■■□ 3.87
CDK5-202ENST00000469108 PBRM1Q86U86 1689 aa39.17■■■■□ 3.86
CDK5-202ENST00000469108 ABCA5Q8WWZ7 1642 aa39.16■■■■□ 3.86
CDK5-202ENST00000469108 GRIN2BQ13224 1484 aa39.12■■■■□ 3.85
CDK5-202ENST00000469108 SNAPC4Q5SXM2 1469 aa39.12■■■■□ 3.85
CDK5-202ENST00000469108 GAPVD1Q14C86 1478 aa39.1■■■■□ 3.85
CDK5-202ENST00000469108 MAGI1Q96QZ7 1491 aaPredicted RBP39.07■■■■□ 3.85
CDK5-202ENST00000469108 FBLN2P98095 1184 aa38.96■■■■□ 3.83
CDK5-202ENST00000469108 SYNJ2O15056 1496 aa38.92■■■■□ 3.82
CDK5-202ENST00000469108 RIMBP3CA6NJZ7 1639 aa38.85■■■■□ 3.81
CDK5-202ENST00000469108 RIMBP3BA6NNM3 1639 aa38.85■■■■□ 3.81
CDK5-202ENST00000469108 RIMBP3Q9UFD9 1639 aa38.85■■■■□ 3.81
CDK5-202ENST00000469108 CHMP7Q8WUX9 453 aaPredicted RBP38.83■■■■□ 3.81
CDK5-202ENST00000469108 ADAMTS12P58397 1594 aa38.78■■■■□ 3.8
CDK5-202ENST00000469108 ARHGEF11O15085 1522 aa38.78■■■■□ 3.8
CDK5-202ENST00000469108 ERICH3Q5RHP9 1530 aa38.76■■■■□ 3.8
CDK5-202ENST00000469108 CLASP1Q7Z460 1538 aa38.76■■■■□ 3.8
CDK5-202ENST00000469108 TRIM41Q8WV44 630 aa38.66■■■■□ 3.78
CDK5-202ENST00000469108 GRIN2AQ12879 1464 aa38.65■■■■□ 3.78
CDK5-202ENST00000469108 FHAD1B1AJZ9 1412 aa38.63■■■■□ 3.77
CDK5-202ENST00000469108 KIF27Q86VH2 1401 aa38.51■■■■□ 3.76
CDK5-202ENST00000469108 CEP170Q5SW79 1584 aa38.5■■■■□ 3.75
CDK5-202ENST00000469108 NUP160Q12769 1436 aa38.47■■■■□ 3.75
CDK5-202ENST00000469108 ARAP1Q96P48 1450 aa38.43■■■■□ 3.74
CDK5-202ENST00000469108 CUL7Q14999 1698 aa38.42■■■■□ 3.74
CDK5-202ENST00000469108 IGF1RP08069 1367 aa38.36■■■■□ 3.73
CDK5-202ENST00000469108 CYB5RLQ6IPT4 315 aa38.31■■■■□ 3.72
CDK5-202ENST00000469108 SHROOM2Q13796 1616 aa38.3■■■■□ 3.72
CDK5-202ENST00000469108 RUSC2Q8N2Y8 1516 aa38.23■■■■□ 3.71
CDK5-202ENST00000469108 ERCC6L2Q5T890 1561 aa38.19■■■■□ 3.7
CDK5-202ENST00000469108 CARMIL1Q5VZK9 1371 aa38.13■■■■□ 3.69
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms