RNA–Protein interactions for RNA: ENST00000468468.5

TSPAN4-211, Transcript of tetraspanin 4, humanhuman

TSL 2

Gene TSPAN4, Length 2,777 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSPAN4-211ENST00000468468 NISCHQ9Y2I1 1504 aa33.16■■■□□ 2.9
TSPAN4-211ENST00000468468 CCDC180Q9P1Z9 1646 aa28.47■■■□□ 2.15
TSPAN4-211ENST00000468468 ZCCHC6Q5VYS8 1495 aaKnown RBP27.95■■■□□ 2.06
TSPAN4-211ENST00000468468 SHROOM4Q9ULL8 1493 aa27.81■■■□□ 2.04
TSPAN4-211ENST00000468468 DCAF8L2P0C7V8 631 aa27.59■■■□□ 2.01
TSPAN4-211ENST00000468468 SUPT5HO00267 1087 aaKnown RBP27.25■■□□□ 1.95
TSPAN4-211ENST00000468468 DCAF1Q9Y4B6 1507 aa27.24■■□□□ 1.95
TSPAN4-211ENST00000468468 ABCC9O60706 1549 aa26.81■■□□□ 1.88
TSPAN4-211ENST00000468468 MYO15BQ96JP2 1530 aa26.66■■□□□ 1.86
TSPAN4-211ENST00000468468 SCRIBQ14160 1630 aa26.56■■□□□ 1.84
TSPAN4-211ENST00000468468 CHIC1Q5VXU3 224 aa26.54■■□□□ 1.84
TSPAN4-211ENST00000468468 NACADO15069 1562 aa26.45■■□□□ 1.82
TSPAN4-211ENST00000468468 RB1CC1Q8TDY2 1594 aa26.14■■□□□ 1.77
TSPAN4-211ENST00000468468 RSF1Q96T23 1441 aaPredicted RBP26.02■■□□□ 1.76
TSPAN4-211ENST00000468468 HRCP23327 699 aa25.94■■□□□ 1.74
TSPAN4-211ENST00000468468 CECR2Q9BXF3 1484 aa25.89■■□□□ 1.74
TSPAN4-211ENST00000468468 PCGF6Q9BYE7 350 aa25.85■■□□□ 1.73
TSPAN4-211ENST00000468468 LOC105371045A0A1W2PR82 267 aa25.77■■□□□ 1.72
TSPAN4-211ENST00000468468 MROH2BQ7Z745 1585 aa25.75■■□□□ 1.71
TSPAN4-211ENST00000468468 UNC13AQ9UPW8 1703 aa25.71■■□□□ 1.71
TSPAN4-211ENST00000468468 WIZO95785 1651 aa25.57■■□□□ 1.68
TSPAN4-211ENST00000468468 BAZ1AQ9NRL2 1556 aaPredicted RBP25.52■■□□□ 1.68
TSPAN4-211ENST00000468468 PABPN1Q86U42 306 aaKnown RBP eCLIP25.5■■□□□ 1.675e-10■■■□□ 17.3
TSPAN4-211ENST00000468468 BICRAQ9NZM4 1560 aa25.44■■□□□ 1.66
TSPAN4-211ENST00000468468 PPARGC1BQ86YN6 1023 aaKnown RBP25.38■■□□□ 1.65
TSPAN4-211ENST00000468468 TRIM41Q8WV44 630 aa25.37■■□□□ 1.65
TSPAN4-211ENST00000468468 SMARCA4P51532 1647 aa25.37■■□□□ 1.65
TSPAN4-211ENST00000468468 TRIM26Q12899 539 aaPredicted RBP25.35■■□□□ 1.65
TSPAN4-211ENST00000468468 TOP2AP11388 1531 aaKnown RBP25.18■■□□□ 1.62
TSPAN4-211ENST00000468468 FAM9AQ8IZU1 332 aaPredicted RBP25.17■■□□□ 1.62
TSPAN4-211ENST00000468468 CCDC88BA6NC98 1476 aa25.05■■□□□ 1.6
TSPAN4-211ENST00000468468 SMARCA2P51531 1590 aa25.02■■□□□ 1.6
TSPAN4-211ENST00000468468 EIF4G1Q04637 1599 aaKnown RBP25■■□□□ 1.59
TSPAN4-211ENST00000468468 EHMT2Q96KQ7 1210 aa24.96■■□□□ 1.59
TSPAN4-211ENST00000468468 PEG3Q9GZU2 1588 aa24.92■■□□□ 1.58
TSPAN4-211ENST00000468468 ATAD2BQ9ULI0 1458 aa24.86■■□□□ 1.57
TSPAN4-211ENST00000468468 ZEB1P37275 1124 aaPredicted RBP24.86■■□□□ 1.57
TSPAN4-211ENST00000468468 ABCC8Q09428 1581 aa24.79■■□□□ 1.56
TSPAN4-211ENST00000468468 BAZ1BQ9UIG0 1483 aaKnown RBP24.75■■□□□ 1.55
TSPAN4-211ENST00000468468 PELP1Q8IZL8 1130 aaKnown RBP24.66■■□□□ 1.54
TSPAN4-211ENST00000468468 NCAPD3P42695 1498 aa24.48■■□□□ 1.51
TSPAN4-211ENST00000468468 WRNQ14191 1432 aaPredicted RBP eCLIP24.46■■□□□ 1.51
TSPAN4-211ENST00000468468 SOGA1O94964 1423 aa24.45■■□□□ 1.5
TSPAN4-211ENST00000468468 HMGXB3Q12766 1538 aa24.43■■□□□ 1.5
TSPAN4-211ENST00000468468 RUSC2Q8N2Y8 1516 aa24.36■■□□□ 1.49
TSPAN4-211ENST00000468468 SYNJ1O43426 1573 aa24.36■■□□□ 1.49
TSPAN4-211ENST00000468468 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.31■■□□□ 1.48
TSPAN4-211ENST00000468468 CEP162Q5TB80 1403 aa24.28■■□□□ 1.48
TSPAN4-211ENST00000468468 CCER1Q8TC90 406 aaPredicted RBP24.26■■□□□ 1.47
TSPAN4-211ENST00000468468 CSRNP3Q8WYN3 585 aa24.26■■□□□ 1.47
TSPAN4-211ENST00000468468 TNIKQ9UKE5 1360 aa24.25■■□□□ 1.47
TSPAN4-211ENST00000468468 EEA1Q15075 1411 aa24.24■■□□□ 1.47
TSPAN4-211ENST00000468468 TTBK1Q5TCY1 1321 aaPredicted RBP24.18■■□□□ 1.46
TSPAN4-211ENST00000468468 UBTFP17480 764 aaKnown RBP24.16■■□□□ 1.46
TSPAN4-211ENST00000468468 CC2D2AQ9P2K1 1620 aa24.15■■□□□ 1.46
TSPAN4-211ENST00000468468 SCAF1Q9H7N4 1312 aaKnown RBP24.13■■□□□ 1.45
TSPAN4-211ENST00000468468 CFTRP13569 1480 aa24.12■■□□□ 1.45
TSPAN4-211ENST00000468468 TOP2BQ02880 1626 aa24.11■■□□□ 1.45
TSPAN4-211ENST00000468468 GOLGA3Q08378 1498 aa24.08■■□□□ 1.45
TSPAN4-211ENST00000468468 BIVM-ERCC5R4GMW8 1640 aa24.04■■□□□ 1.44
TSPAN4-211ENST00000468468 CUX1P39880 1505 aa24.01■■□□□ 1.43
TSPAN4-211ENST00000468468 CEP164Q9UPV0 1460 aa23.97■■□□□ 1.43
TSPAN4-211ENST00000468468 CADPSQ9ULU8 1353 aa23.96■■□□□ 1.43
TSPAN4-211ENST00000468468 KIF21BO75037 1637 aa23.94■■□□□ 1.42
TSPAN4-211ENST00000468468 RAPGEF2Q9Y4G8 1499 aa23.89■■□□□ 1.41
TSPAN4-211ENST00000468468 PRDM2Q13029 1718 aa23.88■■□□□ 1.41
TSPAN4-211ENST00000468468 DIEXFQ68CQ4 756 aaKnown RBP23.85■■□□□ 1.41
TSPAN4-211ENST00000468468 CLIP1P30622 1438 aa23.82■■□□□ 1.4
TSPAN4-211ENST00000468468 RANGAP1P46060 587 aaPredicted RBP23.75■■□□□ 1.39
TSPAN4-211ENST00000468468 KIF27Q86VH2 1401 aa23.75■■□□□ 1.39
TSPAN4-211ENST00000468468 PRXQ9BXM0 1461 aa23.73■■□□□ 1.39
TSPAN4-211ENST00000468468 NESP48681 1621 aa23.73■■□□□ 1.39
TSPAN4-211ENST00000468468 MYT1Q01538 1121 aa23.73■■□□□ 1.39
TSPAN4-211ENST00000468468 VPS8Q8N3P4 1428 aa23.72■■□□□ 1.39
TSPAN4-211ENST00000468468 ACIN1Q9UKV3 1341 aaKnown RBP23.72■■□□□ 1.39
TSPAN4-211ENST00000468468 FANCD2Q9BXW9 1451 aa23.72■■□□□ 1.39
TSPAN4-211ENST00000468468 HNRNPUL2Q1KMD3 747 aaKnown RBP23.7■■□□□ 1.38
TSPAN4-211ENST00000468468 DNAJC5BQ9UF47 199 aa23.69■■□□□ 1.38
TSPAN4-211ENST00000468468 NEUROD1Q13562 356 aa23.67■■□□□ 1.38
TSPAN4-211ENST00000468468 APLP2Q06481 763 aa23.67■■□□□ 1.38
TSPAN4-211ENST00000468468 FGD5Q6ZNL6 1462 aa23.67■■□□□ 1.38
TSPAN4-211ENST00000468468 ERICH3Q5RHP9 1530 aa23.66■■□□□ 1.38
TSPAN4-211ENST00000468468 ZNF316A6NFI3 1004 aaPredicted RBP23.65■■□□□ 1.38
TSPAN4-211ENST00000468468 CUX2O14529 1486 aa23.65■■□□□ 1.38
TSPAN4-211ENST00000468468 CENPBP07199 599 aaPredicted RBP23.59■■□□□ 1.37
TSPAN4-211ENST00000468468 IGF1RP08069 1367 aa23.55■■□□□ 1.36
TSPAN4-211ENST00000468468 DNMBPQ6XZF7 1577 aa23.52■■□□□ 1.36
TSPAN4-211ENST00000468468 LAMC3Q9Y6N6 1575 aa23.52■■□□□ 1.36
TSPAN4-211ENST00000468468 TOPBP1Q92547 1522 aa23.51■■□□□ 1.35
TSPAN4-211ENST00000468468 RAD54L2Q9Y4B4 1467 aa23.49■■□□□ 1.35
TSPAN4-211ENST00000468468 POLA1P09884 1462 aaPredicted RBP23.46■■□□□ 1.35
TSPAN4-211ENST00000468468 GTF3C3Q9Y5Q9 886 aa23.45■■□□□ 1.34
TSPAN4-211ENST00000468468 ARAP1Q96P48 1450 aa23.44■■□□□ 1.34
TSPAN4-211ENST00000468468 CARMIL1Q5VZK9 1371 aa23.43■■□□□ 1.34
TSPAN4-211ENST00000468468 URB2Q14146 1524 aaKnown RBP23.42■■□□□ 1.34
TSPAN4-211ENST00000468468 ABCA10Q8WWZ4 1543 aa23.38■■□□□ 1.33
TSPAN4-211ENST00000468468 PDS5BQ9NTI5 1447 aa23.38■■□□□ 1.33
TSPAN4-211ENST00000468468 ARHGAP35Q9NRY4 1499 aa23.34■■□□□ 1.33
TSPAN4-211ENST00000468468 KANK4Q5T7N3 995 aaPredicted RBP23.32■■□□□ 1.32
TSPAN4-211ENST00000468468 MIER1Q8N108 512 aa23.31■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 7 ms