RNA–Protein interactions for RNA: ENST00000466141.1

RPUSD3-212, Transcript of RNA pseudouridylate synthase domain containing 3, humanhuman

TSL 2

Gene RPUSD3, Length 996 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPUSD3-212ENST00000466141 NISCHQ9Y2I1 1504 aa17.67■□□□□ 0.42
RPUSD3-212ENST00000466141 ABCC9O60706 1549 aa16.41■□□□□ 0.22
RPUSD3-212ENST00000466141 CCDC180Q9P1Z9 1646 aa15.97■□□□□ 0.15
RPUSD3-212ENST00000466141 DNAJC5BQ9UF47 199 aa15.72■□□□□ 0.11
RPUSD3-212ENST00000466141 RB1CC1Q8TDY2 1594 aa15.39■□□□□ 0.05
RPUSD3-212ENST00000466141 PABPN1Q86U42 306 aaKnown RBP eCLIP15.23■□□□□ 0.03
RPUSD3-212ENST00000466141 NACADO15069 1562 aa15.19■□□□□ 0.02
RPUSD3-212ENST00000466141 DCAF8L2P0C7V8 631 aa15.12■□□□□ 0.01
RPUSD3-212ENST00000466141 UNC13AQ9UPW8 1703 aa15.09■□□□□ 0.01
RPUSD3-212ENST00000466141 BICRAQ9NZM4 1560 aa15.01□□□□□ -0.01
RPUSD3-212ENST00000466141 DNAJC5Q9H3Z4 198 aa14.9□□□□□ -0.02
RPUSD3-212ENST00000466141 MYO15BQ96JP2 1530 aa14.82□□□□□ -0.04
RPUSD3-212ENST00000466141 CECR2Q9BXF3 1484 aa14.79□□□□□ -0.04
RPUSD3-212ENST00000466141 CC2D2AQ9P2K1 1620 aa14.77□□□□□ -0.04
RPUSD3-212ENST00000466141 SHROOM4Q9ULL8 1493 aa14.66□□□□□ -0.06
RPUSD3-212ENST00000466141 EIF4G1Q04637 1599 aaKnown RBP14.65□□□□□ -0.06
RPUSD3-212ENST00000466141 SCRIBQ14160 1630 aa14.63□□□□□ -0.07
RPUSD3-212ENST00000466141 ZCCHC6Q5VYS8 1495 aaKnown RBP14.58□□□□□ -0.08
RPUSD3-212ENST00000466141 DCAF1Q9Y4B6 1507 aa14.52□□□□□ -0.08
RPUSD3-212ENST00000466141 CUX2O14529 1486 aa14.21□□□□□ -0.13
RPUSD3-212ENST00000466141 ERCC6Q03468 1493 aa14.16□□□□□ -0.14
RPUSD3-212ENST00000466141 NCAPD3P42695 1498 aa14.04□□□□□ -0.16
RPUSD3-212ENST00000466141 NESP48681 1621 aa14.01□□□□□ -0.17
RPUSD3-212ENST00000466141 ATAD2BQ9ULI0 1458 aa13.98□□□□□ -0.17
RPUSD3-212ENST00000466141 TRIM41Q8WV44 630 aa13.91□□□□□ -0.18
RPUSD3-212ENST00000466141 THOC2Q8NI27 1593 aaKnown RBP13.91□□□□□ -0.18
RPUSD3-212ENST00000466141 HMGXB3Q12766 1538 aa13.9□□□□□ -0.18
RPUSD3-212ENST00000466141 SMARCA2P51531 1590 aa13.88□□□□□ -0.19
RPUSD3-212ENST00000466141 SMARCA4P51532 1647 aa13.87□□□□□ -0.19
RPUSD3-212ENST00000466141 BAZ1BQ9UIG0 1483 aaKnown RBP13.81□□□□□ -0.2
RPUSD3-212ENST00000466141 KIF21AQ7Z4S6 1674 aa13.79□□□□□ -0.2
RPUSD3-212ENST00000466141 LAMC3Q9Y6N6 1575 aa13.77□□□□□ -0.21
RPUSD3-212ENST00000466141 BAZ1AQ9NRL2 1556 aaPredicted RBP13.73□□□□□ -0.21
RPUSD3-212ENST00000466141 PEG3Q9GZU2 1588 aa13.71□□□□□ -0.22
RPUSD3-212ENST00000466141 PDS5BQ9NTI5 1447 aa13.7□□□□□ -0.22
RPUSD3-212ENST00000466141 SLC24A1O60721 1099 aa13.66□□□□□ -0.22
RPUSD3-212ENST00000466141 MROH2BQ7Z745 1585 aa13.66□□□□□ -0.22
RPUSD3-212ENST00000466141 MRC2Q9UBG0 1479 aa13.63□□□□□ -0.23
RPUSD3-212ENST00000466141 WDR62O43379 1518 aa13.61□□□□□ -0.23
RPUSD3-212ENST00000466141 CADPSQ9ULU8 1353 aa13.6□□□□□ -0.23
RPUSD3-212ENST00000466141 CHIC1Q5VXU3 224 aa13.52□□□□□ -0.25
RPUSD3-212ENST00000466141 CEP164Q9UPV0 1460 aa13.51□□□□□ -0.25
RPUSD3-212ENST00000466141 OSCARQ8IYS5 282 aa13.5□□□□□ -0.25
RPUSD3-212ENST00000466141 WIZO95785 1651 aa13.48□□□□□ -0.25
RPUSD3-212ENST00000466141 FANCD2Q9BXW9 1451 aa13.48□□□□□ -0.25
RPUSD3-212ENST00000466141 RIMBP3CA6NJZ7 1639 aa13.42□□□□□ -0.26
RPUSD3-212ENST00000466141 RIMBP3BA6NNM3 1639 aa13.42□□□□□ -0.26
RPUSD3-212ENST00000466141 RIMBP3Q9UFD9 1639 aa13.42□□□□□ -0.26
RPUSD3-212ENST00000466141 URB2Q14146 1524 aaKnown RBP13.4□□□□□ -0.26
RPUSD3-212ENST00000466141 CFTRP13569 1480 aa13.37□□□□□ -0.27
RPUSD3-212ENST00000466141 ARHGEF11O15085 1522 aa13.34□□□□□ -0.27
RPUSD3-212ENST00000466141 ZNF608Q9ULD9 1512 aaPredicted RBP13.32□□□□□ -0.28
RPUSD3-212ENST00000466141 CYB5RLQ6IPT4 315 aa13.26□□□□□ -0.29
RPUSD3-212ENST00000466141 AEBP2Q6ZN18 517 aaPredicted RBP13.25□□□□□ -0.29
RPUSD3-212ENST00000466141 TOP2AP11388 1531 aaKnown RBP13.24□□□□□ -0.29
RPUSD3-212ENST00000466141 IFT140Q96RY7 1462 aa13.23□□□□□ -0.29
RPUSD3-212ENST00000466141 RSF1Q96T23 1441 aaPredicted RBP13.22□□□□□ -0.29
RPUSD3-212ENST00000466141 TRHP20396 242 aaPredicted RBP13.22□□□□□ -0.29
RPUSD3-212ENST00000466141 EIF4G3O43432 1585 aaKnown RBP13.2□□□□□ -0.3
RPUSD3-212ENST00000466141 ARAP1Q96P48 1450 aa13.2□□□□□ -0.3
RPUSD3-212ENST00000466141 PRDM2Q13029 1718 aa13.19□□□□□ -0.3
RPUSD3-212ENST00000466141 TOPBP1Q92547 1522 aa13.18□□□□□ -0.3
RPUSD3-212ENST00000466141 CHD1O14646 1710 aa13.17□□□□□ -0.3
RPUSD3-212ENST00000466141 AQRO60306 1485 aaKnown RBP eCLIP13.13□□□□□ -0.312e-7■■□□□ 14.5
RPUSD3-212ENST00000466141 CCDC88BA6NC98 1476 aa13.11□□□□□ -0.31
RPUSD3-212ENST00000466141 FBLN2P98095 1184 aa13.11□□□□□ -0.31
RPUSD3-212ENST00000466141 TARBP1Q13395 1621 aaKnown RBP13.09□□□□□ -0.31
RPUSD3-212ENST00000466141 DNMBPQ6XZF7 1577 aa13.08□□□□□ -0.32
RPUSD3-212ENST00000466141 MYT1Q01538 1121 aa13.07□□□□□ -0.32
RPUSD3-212ENST00000466141 ABCC8Q09428 1581 aa13.05□□□□□ -0.32
RPUSD3-212ENST00000466141 POLA1P09884 1462 aaPredicted RBP13.03□□□□□ -0.32
RPUSD3-212ENST00000466141 RAD54L2Q9Y4B4 1467 aa13.02□□□□□ -0.33
RPUSD3-212ENST00000466141 CLASP1Q7Z460 1538 aa13□□□□□ -0.33
RPUSD3-212ENST00000466141 TDRD9Q8NDG6 1382 aaKnown RBP13□□□□□ -0.33
RPUSD3-212ENST00000466141 SNAPC4Q5SXM2 1469 aa12.98□□□□□ -0.33
RPUSD3-212ENST00000466141 SOGA1O94964 1423 aa12.95□□□□□ -0.34
RPUSD3-212ENST00000466141 SYNJ1O43426 1573 aa12.93□□□□□ -0.34
RPUSD3-212ENST00000466141 CHMP7Q8WUX9 453 aaPredicted RBP12.92□□□□□ -0.34
RPUSD3-212ENST00000466141 FGD5Q6ZNL6 1462 aa12.91□□□□□ -0.34
RPUSD3-212ENST00000466141 PELP1Q8IZL8 1130 aaKnown RBP12.89□□□□□ -0.35
RPUSD3-212ENST00000466141 GAPVD1Q14C86 1478 aa12.89□□□□□ -0.35
RPUSD3-212ENST00000466141 MAGI1Q96QZ7 1491 aaPredicted RBP12.88□□□□□ -0.35
RPUSD3-212ENST00000466141 SYNJ2O15056 1496 aa12.86□□□□□ -0.35
RPUSD3-212ENST00000466141 GRIN2BQ13224 1484 aa12.86□□□□□ -0.35
RPUSD3-212ENST00000466141 ILDR1Q86SU0 546 aaPredicted RBP12.86□□□□□ -0.35
RPUSD3-212ENST00000466141 WDR97A6NE52 1622 aa12.85□□□□□ -0.35
RPUSD3-212ENST00000466141 CUX1P39880 1505 aa12.85□□□□□ -0.35
RPUSD3-212ENST00000466141 TTBK1Q5TCY1 1321 aaPredicted RBP12.83□□□□□ -0.36
RPUSD3-212ENST00000466141 ERCC6L2Q5T890 1561 aa12.82□□□□□ -0.36
RPUSD3-212ENST00000466141 PBRM1Q86U86 1689 aa12.81□□□□□ -0.36
RPUSD3-212ENST00000466141 EHMT2Q96KQ7 1210 aa12.8□□□□□ -0.36
RPUSD3-212ENST00000466141 ABCA5Q8WWZ7 1642 aa12.73□□□□□ -0.37
RPUSD3-212ENST00000466141 CEP170Q5SW79 1584 aa12.73□□□□□ -0.37
RPUSD3-212ENST00000466141 GRIN2AQ12879 1464 aa12.72□□□□□ -0.37
RPUSD3-212ENST00000466141 KIF13AQ9H1H9 1805 aa12.7□□□□□ -0.38
RPUSD3-212ENST00000466141 ABCA10Q8WWZ4 1543 aa12.7□□□□□ -0.38
RPUSD3-212ENST00000466141 NUP160Q12769 1436 aa12.68□□□□□ -0.38
RPUSD3-212ENST00000466141 ADAMTS12P58397 1594 aa12.68□□□□□ -0.38
RPUSD3-212ENST00000466141 SHROOM2Q13796 1616 aa12.66□□□□□ -0.38
RPUSD3-212ENST00000466141 SUPT5HO00267 1087 aaKnown RBP12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 119.9 ms