RNA–Protein interactions for RNA: ENST00000465670.1

EIF3B-207, Transcript of eukaryotic translation initiation factor 3 subunit B, humanhuman

TSL 2

Gene EIF3B, Length 2,766 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
EIF3B-207ENST00000465670 UTP3Q9NQZ2 479 aaKnown RBP eCLIP15.51■□□□□ 0.073e-8■■■■■ 160.4
EIF3B-207ENST00000465670 UPF1Q92900 1129 aaKnown RBP eCLIP13.94□□□□□ -0.183e-14■■■■■ 47.6
EIF3B-207ENST00000465670 METAP2P50579 478 aaKnown RBP eCLIP16.45■□□□□ 0.227e-10■■■■■ 41
EIF3B-207ENST00000465670 SF3A3Q12874 501 aaKnown RBP eCLIP16.08■□□□□ 0.165e-6■■■■■ 35.2
EIF3B-207ENST00000465670 GPKOWQ92917 476 aaPredicted RBP eCLIP16.09■□□□□ 0.175e-9■■■■■ 30.4
EIF3B-207ENST00000465670 SF3B1O75533 1304 aaKnown RBP eCLIP15.03■□□□□ -07e-8■■■■■ 30.2
EIF3B-207ENST00000465670 SF3B4Q15427 424 aaKnown RBP eCLIP14.62□□□□□ -0.077e-12■■■■■ 28.6
EIF3B-207ENST00000465670 RBFOX2O43251 390 aaKnown RBP eCLIP12.28□□□□□ -0.444e-7■■■■■ 28.4
EIF3B-207ENST00000465670 XRN2Q9H0D6 950 aaKnown RBP eCLIP13.92□□□□□ -0.183e-6■■■■■ 27.8
EIF3B-207ENST00000465670 AQRO60306 1485 aaKnown RBP eCLIP20.09■□□□□ 0.813e-7■■■■■ 27.4
EIF3B-207ENST00000465670 BUD13Q9BRD0 619 aaKnown RBP eCLIP15.78■□□□□ 0.121e-8■■■■□ 24.4
EIF3B-207ENST00000465670 DDX42Q86XP3 938 aaKnown RBP eCLIP15.99■□□□□ 0.152e-8■■■■□ 23.4
EIF3B-207ENST00000465670 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP12.79□□□□□ -0.364e-7■■■■□ 22.5
EIF3B-207ENST00000465670 AKAP1Q92667 903 aaKnown RBP eCLIP13.86□□□□□ -0.191e-7■■■■□ 22.3
EIF3B-207ENST00000465670 HNRNPMP52272 730 aaKnown RBP eCLIP19.37■□□□□ 0.691e-6■■■■□ 21.9
EIF3B-207ENST00000465670 ZC3H11AO75152 810 aaKnown RBP eCLIP14.97□□□□□ -0.017e-7■■■■□ 20.6
EIF3B-207ENST00000465670 SMNDC1O75940 238 aaKnown RBP eCLIP15.8■□□□□ 0.124e-12■■■□□ 18.3
EIF3B-207ENST00000465670 ZRANB2O95218 330 aaKnown RBP eCLIP16.91■□□□□ 0.35e-6■■■□□ 17.8
EIF3B-207ENST00000465670 RPS3P23396 243 aaKnown RBP eCLIP13.97□□□□□ -0.172e-15■■■□□ 17.6
EIF3B-207ENST00000465670 EFTUD2Q15029 972 aaKnown RBP eCLIP15.3■□□□□ 0.047e-11■■■□□ 17.5
EIF3B-207ENST00000465670 SUB1P53999 127 aaKnown RBP eCLIP11.51□□□□□ -0.577e-9■■■□□ 17.2
EIF3B-207ENST00000465670 LARP4Q71RC2 724 aaKnown RBP eCLIP14.47□□□□□ -0.092e-7■■■□□ 16.7
EIF3B-207ENST00000465670 FXR2P51116 673 aaKnown RBP eCLIP15.67■□□□□ 0.13e-8■■■□□ 16.4
EIF3B-207ENST00000465670 UTP18Q9Y5J1 556 aaKnown RBP eCLIP15.73■□□□□ 0.113e-6■■■□□ 16.3
EIF3B-207ENST00000465670 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP10.88□□□□□ -0.677e-8■■■□□ 16.2
EIF3B-207ENST00000465670 PABPN1Q86U42 306 aaKnown RBP eCLIP22.1■■□□□ 1.135e-8■■■□□ 15.8
EIF3B-207ENST00000465670 GRSF1Q12849 480 aaKnown RBP eCLIP14.56□□□□□ -0.082e-6■■■□□ 15.5
EIF3B-207ENST00000465670 EIF4G2P78344 907 aaKnown RBP eCLIP19.74■□□□□ 0.751e-6■■■□□ 15.3
EIF3B-207ENST00000465670 RBM15Q96T37 977 aaKnown RBP eCLIP15.36■□□□□ 0.052e-7■■■□□ 15.2
EIF3B-207ENST00000465670 NOLC1Q14978 699 aaKnown RBP eCLIP17.66■□□□□ 0.423e-7■■■□□ 14.8
EIF3B-207ENST00000465670 TARDBPQ13148 414 aaKnown RBP eCLIP14.01□□□□□ -0.171e-6■■■□□ 14.7
EIF3B-207ENST00000465670 FXR1P51114 621 aaKnown RBP eCLIP16.43■□□□□ 0.222e-6■■□□□ 14.3
EIF3B-207ENST00000465670 PUM1Q14671 1186 aaKnown RBP eCLIP13.75□□□□□ -0.211e-7■■□□□ 13.5
EIF3B-207ENST00000465670 DDX6P26196 483 aaKnown RBP eCLIP13.36□□□□□ -0.275e-6■■□□□ 13
EIF3B-207ENST00000465670 PCBP1Q15365 356 aaKnown RBP eCLIP14.28□□□□□ -0.124e-8■■□□□ 12.4
EIF3B-207ENST00000465670 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP16.95■□□□□ 0.35e-7■□□□□ 11.2
EIF3B-207ENST00000465670 PABPC4Q13310 644 aaKnown RBP eCLIP15.62■□□□□ 0.094e-11■□□□□ 10.8
EIF3B-207ENST00000465670 ZNF800Q2TB10 664 aaPredicted RBP eCLIP13.96□□□□□ -0.173e-6■□□□□ 10.3
EIF3B-207ENST00000465670 EWSR1Q01844 656 aaKnown RBP eCLIP12.68□□□□□ -0.389e-7■□□□□ 10.2
EIF3B-207ENST00000465670 FMR1Q06787 632 aaKnown RBP eCLIP16.55■□□□□ 0.241e-6■□□□□ 10.1
EIF3B-207ENST00000465670 PPIGQ13427 754 aaKnown RBP eCLIP13.97□□□□□ -0.179e-31■□□□□ 10
EIF3B-207ENST00000465670 G3BP1Q13283 466 aaKnown RBP eCLIP17■□□□□ 0.313e-6■□□□□ 10
EIF3B-207ENST00000465670 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.26■□□□□ 0.679e-13■□□□□ 9.9
EIF3B-207ENST00000465670 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP20.01■□□□□ 0.799e-6■□□□□ 9.6
EIF3B-207ENST00000465670 PRPF4O43172 522 aaKnown RBP eCLIP15.31■□□□□ 0.042e-7■□□□□ 8.8
EIF3B-207ENST00000465670 DDX55Q8NHQ9 600 aaKnown RBP eCLIP15.18■□□□□ 0.023e-15■□□□□ 8.8
EIF3B-207ENST00000465670 DDX24Q9GZR7 859 aaKnown RBP eCLIP16.44■□□□□ 0.223e-7■□□□□ 8.7
EIF3B-207ENST00000465670 ZNF622Q969S3 477 aaKnown RBP eCLIP16.15■□□□□ 0.181e-8■□□□□ 8.5
EIF3B-207ENST00000465670 LIN28BQ6ZN17 250 aaKnown RBP eCLIP13.79□□□□□ -0.27e-8■□□□□ 8.4
Retrieved 49 of 49 RNA–protein pairs in 11.4 ms