RNA–Protein interactions for RNA: ENST00000462944.1

MDH1-209, Transcript of malate dehydrogenase 1, humanhuman

TSL 3

Gene MDH1, Length 634 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MDH1-209ENST00000462944 NISCHQ9Y2I1 1504 aa23.23■■□□□ 1.31
MDH1-209ENST00000462944 AEBP2Q6ZN18 517 aaPredicted RBP22.07■■□□□ 1.12
MDH1-209ENST00000462944 ABCC9O60706 1549 aa21.18■□□□□ 0.98
MDH1-209ENST00000462944 CCDC180Q9P1Z9 1646 aa21.16■□□□□ 0.98
MDH1-209ENST00000462944 CHIC1Q5VXU3 224 aa20.9■□□□□ 0.94
MDH1-209ENST00000462944 RB1CC1Q8TDY2 1594 aa20.21■□□□□ 0.83
MDH1-209ENST00000462944 DNAJC5BQ9UF47 199 aa20.03■□□□□ 0.8
MDH1-209ENST00000462944 NACADO15069 1562 aa20.01■□□□□ 0.79
MDH1-209ENST00000462944 UNC13AQ9UPW8 1703 aa19.8■□□□□ 0.76
MDH1-209ENST00000462944 MYO15BQ96JP2 1530 aa19.69■□□□□ 0.74
MDH1-209ENST00000462944 PABPN1Q86U42 306 aaKnown RBP eCLIP19.57■□□□□ 0.72
MDH1-209ENST00000462944 BICRAQ9NZM4 1560 aa19.54■□□□□ 0.72
MDH1-209ENST00000462944 DCAF8L2P0C7V8 631 aa19.54■□□□□ 0.72
MDH1-209ENST00000462944 SHROOM4Q9ULL8 1493 aa19.44■□□□□ 0.7
MDH1-209ENST00000462944 DCAF1Q9Y4B6 1507 aa19.28■□□□□ 0.68
MDH1-209ENST00000462944 CC2D2AQ9P2K1 1620 aa19.22■□□□□ 0.67
MDH1-209ENST00000462944 ZCCHC6Q5VYS8 1495 aaKnown RBP19.19■□□□□ 0.66
MDH1-209ENST00000462944 CECR2Q9BXF3 1484 aa19.17■□□□□ 0.66
MDH1-209ENST00000462944 EIF4G1Q04637 1599 aaKnown RBP19.11■□□□□ 0.65
MDH1-209ENST00000462944 SCRIBQ14160 1630 aa19.04■□□□□ 0.64
MDH1-209ENST00000462944 SENP3Q9H4L4 574 aaPredicted RBP18.9■□□□□ 0.62
MDH1-209ENST00000462944 DNAJC5Q9H3Z4 198 aa18.77■□□□□ 0.6
MDH1-209ENST00000462944 PHF23Q9BUL5 403 aaPredicted RBP18.61■□□□□ 0.57
MDH1-209ENST00000462944 CUX2O14529 1486 aa18.55■□□□□ 0.56
MDH1-209ENST00000462944 NCAPD3P42695 1498 aa18.4■□□□□ 0.54
MDH1-209ENST00000462944 ERCC6Q03468 1493 aa18.39■□□□□ 0.53
MDH1-209ENST00000462944 HMGXB3Q12766 1538 aa18.3■□□□□ 0.52
MDH1-209ENST00000462944 SMARCA2P51531 1590 aa18.3■□□□□ 0.52
MDH1-209ENST00000462944 ATAD2BQ9ULI0 1458 aa18.26■□□□□ 0.51
MDH1-209ENST00000462944 SMARCA4P51532 1647 aa18.22■□□□□ 0.51
MDH1-209ENST00000462944 LAMC3Q9Y6N6 1575 aa18.12■□□□□ 0.49
MDH1-209ENST00000462944 THOC2Q8NI27 1593 aaKnown RBP18.11■□□□□ 0.49
MDH1-209ENST00000462944 PEG3Q9GZU2 1588 aa18.11■□□□□ 0.49
MDH1-209ENST00000462944 BAZ1AQ9NRL2 1556 aaPredicted RBP18.11■□□□□ 0.49
MDH1-209ENST00000462944 BAZ1BQ9UIG0 1483 aaKnown RBP18.09■□□□□ 0.49
MDH1-209ENST00000462944 NESP48681 1621 aa18.08■□□□□ 0.48
MDH1-209ENST00000462944 KIF21AQ7Z4S6 1674 aa18■□□□□ 0.47
MDH1-209ENST00000462944 PDS5BQ9NTI5 1447 aa17.96■□□□□ 0.47
MDH1-209ENST00000462944 MROH2BQ7Z745 1585 aa17.83■□□□□ 0.44
MDH1-209ENST00000462944 MRC2Q9UBG0 1479 aa17.8■□□□□ 0.44
MDH1-209ENST00000462944 CADPSQ9ULU8 1353 aa17.79■□□□□ 0.44
MDH1-209ENST00000462944 WDR62O43379 1518 aa17.79■□□□□ 0.44
MDH1-209ENST00000462944 TRIM41Q8WV44 630 aa17.71■□□□□ 0.43
MDH1-209ENST00000462944 CEP164Q9UPV0 1460 aa17.68■□□□□ 0.42
MDH1-209ENST00000462944 WIZO95785 1651 aa17.64■□□□□ 0.41
MDH1-209ENST00000462944 FANCD2Q9BXW9 1451 aa17.59■□□□□ 0.41
MDH1-209ENST00000462944 FOXD1Q16676 465 aa17.59■□□□□ 0.41
MDH1-209ENST00000462944 PRDM2Q13029 1718 aa17.58■□□□□ 0.4
MDH1-209ENST00000462944 OSCARQ8IYS5 282 aa17.55■□□□□ 0.4
MDH1-209ENST00000462944 CFTRP13569 1480 aa17.55■□□□□ 0.4
MDH1-209ENST00000462944 TOP2AP11388 1531 aaKnown RBP17.44■□□□□ 0.38
MDH1-209ENST00000462944 URB2Q14146 1524 aaKnown RBP17.43■□□□□ 0.38
MDH1-209ENST00000462944 RIMBP3CA6NJZ7 1639 aa17.4■□□□□ 0.38
MDH1-209ENST00000462944 RIMBP3BA6NNM3 1639 aa17.4■□□□□ 0.38
MDH1-209ENST00000462944 RIMBP3Q9UFD9 1639 aa17.4■□□□□ 0.38
MDH1-209ENST00000462944 IFT140Q96RY7 1462 aa17.34■□□□□ 0.37
MDH1-209ENST00000462944 RSF1Q96T23 1441 aaPredicted RBP17.34■□□□□ 0.37
MDH1-209ENST00000462944 ABCC8Q09428 1581 aa17.31■□□□□ 0.36
MDH1-209ENST00000462944 ARHGEF11O15085 1522 aa17.28■□□□□ 0.36
MDH1-209ENST00000462944 TOPBP1Q92547 1522 aa17.23■□□□□ 0.35
MDH1-209ENST00000462944 EIF4G3O43432 1585 aaKnown RBP17.23■□□□□ 0.35
MDH1-209ENST00000462944 ZNF608Q9ULD9 1512 aaPredicted RBP17.22■□□□□ 0.35
MDH1-209ENST00000462944 CHD1O14646 1710 aa17.21■□□□□ 0.35
MDH1-209ENST00000462944 DNMBPQ6XZF7 1577 aa17.19■□□□□ 0.34
MDH1-209ENST00000462944 CCDC88BA6NC98 1476 aa17.16■□□□□ 0.34
MDH1-209ENST00000462944 TARBP1Q13395 1621 aaKnown RBP17.14■□□□□ 0.33
MDH1-209ENST00000462944 WDR97A6NE52 1622 aa17.1■□□□□ 0.33
MDH1-209ENST00000462944 CYB5RLQ6IPT4 315 aa17.07■□□□□ 0.32
MDH1-209ENST00000462944 ARAP1Q96P48 1450 aa17.05■□□□□ 0.32
MDH1-209ENST00000462944 AQRO60306 1485 aaKnown RBP eCLIP17.02■□□□□ 0.32
MDH1-209ENST00000462944 POLA1P09884 1462 aaPredicted RBP17.01■□□□□ 0.31
MDH1-209ENST00000462944 TRHP20396 242 aaPredicted RBP17■□□□□ 0.31
MDH1-209ENST00000462944 SYNJ1O43426 1573 aa16.98■□□□□ 0.31
MDH1-209ENST00000462944 CLASP1Q7Z460 1538 aa16.96■□□□□ 0.3
MDH1-209ENST00000462944 FBLN2P98095 1184 aa16.95■□□□□ 0.3
MDH1-209ENST00000462944 MAGI1Q96QZ7 1491 aaPredicted RBP16.94■□□□□ 0.3
MDH1-209ENST00000462944 SOGA1O94964 1423 aa16.92■□□□□ 0.3
MDH1-209ENST00000462944 SNAPC4Q5SXM2 1469 aa16.89■□□□□ 0.29
MDH1-209ENST00000462944 RAD54L2Q9Y4B4 1467 aa16.87■□□□□ 0.29
MDH1-209ENST00000462944 PBRM1Q86U86 1689 aa16.86■□□□□ 0.29
MDH1-209ENST00000462944 GRIN2BQ13224 1484 aa16.86■□□□□ 0.29
MDH1-209ENST00000462944 FGD5Q6ZNL6 1462 aa16.86■□□□□ 0.29
MDH1-209ENST00000462944 TDRD9Q8NDG6 1382 aaKnown RBP16.85■□□□□ 0.29
MDH1-209ENST00000462944 SYNJ2O15056 1496 aa16.85■□□□□ 0.29
MDH1-209ENST00000462944 CHMP7Q8WUX9 453 aaPredicted RBP16.84■□□□□ 0.29
MDH1-209ENST00000462944 CUX1P39880 1505 aa16.79■□□□□ 0.28
MDH1-209ENST00000462944 GAPVD1Q14C86 1478 aa16.75■□□□□ 0.27
MDH1-209ENST00000462944 ABCA5Q8WWZ7 1642 aa16.73■□□□□ 0.27
MDH1-209ENST00000462944 ABCA10Q8WWZ4 1543 aa16.7■□□□□ 0.26
MDH1-209ENST00000462944 PLPPR3Q6T4P5 718 aa16.69■□□□□ 0.26
MDH1-209ENST00000462944 GRIN2AQ12879 1464 aa16.63■□□□□ 0.25
MDH1-209ENST00000462944 SHROOM2Q13796 1616 aa16.63■□□□□ 0.25
MDH1-209ENST00000462944 KIF13AQ9H1H9 1805 aa16.61■□□□□ 0.25
MDH1-209ENST00000462944 ADAMTS12P58397 1594 aa16.6■□□□□ 0.25
MDH1-209ENST00000462944 CEP170Q5SW79 1584 aa16.6■□□□□ 0.25
MDH1-209ENST00000462944 NUP160Q12769 1436 aa16.59■□□□□ 0.25
MDH1-209ENST00000462944 WRNQ14191 1432 aaPredicted RBP eCLIP16.56■□□□□ 0.24
MDH1-209ENST00000462944 BIVM-ERCC5R4GMW8 1640 aa16.56■□□□□ 0.24
MDH1-209ENST00000462944 MSH5O43196 834 aa16.55■□□□□ 0.24
MDH1-209ENST00000462944 ERCC6L2Q5T890 1561 aa16.55■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 78.6 ms