RNA–Protein interactions for RNA: ENST00000461437.5

NUP50-213, Transcript of nucleoporin 50, humanhuman

TSL 4

Gene NUP50, Length 531 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP50-213ENST00000461437 NISCHQ9Y2I1 1504 aa38.5■■■■□ 3.75
NUP50-213ENST00000461437 CCDC180Q9P1Z9 1646 aa34.42■■■■□ 3.1
NUP50-213ENST00000461437 ABCC9O60706 1549 aa34.21■■■■□ 3.07
NUP50-213ENST00000461437 RB1CC1Q8TDY2 1594 aa32.59■■■□□ 2.81
NUP50-213ENST00000461437 DCAF8L2P0C7V8 631 aa32.44■■■□□ 2.78
NUP50-213ENST00000461437 NACADO15069 1562 aa32.41■■■□□ 2.78
NUP50-213ENST00000461437 UNC13AQ9UPW8 1703 aa32.07■■■□□ 2.72
NUP50-213ENST00000461437 ZCCHC6Q5VYS8 1495 aaKnown RBP31.98■■■□□ 2.71
NUP50-213ENST00000461437 MYO15BQ96JP2 1530 aa31.97■■■□□ 2.71
NUP50-213ENST00000461437 PABPN1Q86U42 306 aaKnown RBP eCLIP31.9■■■□□ 2.7
NUP50-213ENST00000461437 DNAJC5BQ9UF47 199 aa31.82■■■□□ 2.68
NUP50-213ENST00000461437 DCAF1Q9Y4B6 1507 aa31.72■■■□□ 2.67
NUP50-213ENST00000461437 BICRAQ9NZM4 1560 aa31.72■■■□□ 2.67
NUP50-213ENST00000461437 SCRIBQ14160 1630 aa31.52■■■□□ 2.64
NUP50-213ENST00000461437 SHROOM4Q9ULL8 1493 aa31.09■■■□□ 2.57
NUP50-213ENST00000461437 CC2D2AQ9P2K1 1620 aa30.91■■■□□ 2.54
NUP50-213ENST00000461437 EIF4G1Q04637 1599 aaKnown RBP30.88■■■□□ 2.53
NUP50-213ENST00000461437 CECR2Q9BXF3 1484 aa30.71■■■□□ 2.51
NUP50-213ENST00000461437 SMARCA4P51532 1647 aa30.02■■■□□ 2.4
NUP50-213ENST00000461437 ATAD2BQ9ULI0 1458 aa29.92■■■□□ 2.38
NUP50-213ENST00000461437 NCAPD3P42695 1498 aa29.89■■■□□ 2.38
NUP50-213ENST00000461437 BAZ1AQ9NRL2 1556 aaPredicted RBP29.85■■■□□ 2.37
NUP50-213ENST00000461437 SMARCA2P51531 1590 aa29.81■■■□□ 2.36
NUP50-213ENST00000461437 MROH2BQ7Z745 1585 aa29.74■■■□□ 2.35
NUP50-213ENST00000461437 HMGXB3Q12766 1538 aa29.74■■■□□ 2.35
NUP50-213ENST00000461437 BAZ1BQ9UIG0 1483 aaKnown RBP29.66■■■□□ 2.34
NUP50-213ENST00000461437 PEG3Q9GZU2 1588 aa29.64■■■□□ 2.33
NUP50-213ENST00000461437 NESP48681 1621 aa29.51■■■□□ 2.31
NUP50-213ENST00000461437 DNAJC5Q9H3Z4 198 aa29.47■■■□□ 2.31
NUP50-213ENST00000461437 WIZO95785 1651 aa29.47■■■□□ 2.31
NUP50-213ENST00000461437 ERCC6Q03468 1493 aa29.45■■■□□ 2.31
NUP50-213ENST00000461437 LAMC3Q9Y6N6 1575 aa29.22■■■□□ 2.27
NUP50-213ENST00000461437 CUX2O14529 1486 aa29.21■■■□□ 2.27
NUP50-213ENST00000461437 KIF21AQ7Z4S6 1674 aa29.18■■■□□ 2.26
NUP50-213ENST00000461437 RSF1Q96T23 1441 aaPredicted RBP29.18■■■□□ 2.26
NUP50-213ENST00000461437 THOC2Q8NI27 1593 aaKnown RBP29.11■■■□□ 2.25
NUP50-213ENST00000461437 CADPSQ9ULU8 1353 aa29.01■■■□□ 2.24
NUP50-213ENST00000461437 TOP2AP11388 1531 aaKnown RBP29■■■□□ 2.23
NUP50-213ENST00000461437 PDS5BQ9NTI5 1447 aa28.99■■■□□ 2.23
NUP50-213ENST00000461437 MRC2Q9UBG0 1479 aa28.79■■■□□ 2.2
NUP50-213ENST00000461437 CFTRP13569 1480 aa28.77■■■□□ 2.2
NUP50-213ENST00000461437 FANCD2Q9BXW9 1451 aa28.75■■■□□ 2.19
NUP50-213ENST00000461437 CEP164Q9UPV0 1460 aa28.74■■■□□ 2.19
NUP50-213ENST00000461437 WDR62O43379 1518 aa28.72■■■□□ 2.19
NUP50-213ENST00000461437 CCDC88BA6NC98 1476 aa28.69■■■□□ 2.18
NUP50-213ENST00000461437 PRDM2Q13029 1718 aa28.66■■■□□ 2.18
NUP50-213ENST00000461437 URB2Q14146 1524 aaKnown RBP28.54■■■□□ 2.16
NUP50-213ENST00000461437 TOPBP1Q92547 1522 aa28.26■■■□□ 2.11
NUP50-213ENST00000461437 SUPT5HO00267 1087 aaKnown RBP28.21■■■□□ 2.11
NUP50-213ENST00000461437 DNMBPQ6XZF7 1577 aa28.17■■■□□ 2.1
NUP50-213ENST00000461437 ZNF608Q9ULD9 1512 aaPredicted RBP28.17■■■□□ 2.1
NUP50-213ENST00000461437 IFT140Q96RY7 1462 aa28.12■■■□□ 2.09
NUP50-213ENST00000461437 ABCC8Q09428 1581 aa28.08■■■□□ 2.09
NUP50-213ENST00000461437 TRIM41Q8WV44 630 aa28.03■■■□□ 2.08
NUP50-213ENST00000461437 EIF4G3O43432 1585 aaKnown RBP28.03■■■□□ 2.08
NUP50-213ENST00000461437 TARBP1Q13395 1621 aaKnown RBP28.01■■■□□ 2.07
NUP50-213ENST00000461437 POLA1P09884 1462 aaPredicted RBP27.99■■■□□ 2.07
NUP50-213ENST00000461437 RAD54L2Q9Y4B4 1467 aa27.94■■■□□ 2.06
NUP50-213ENST00000461437 AQRO60306 1485 aaKnown RBP eCLIP27.92■■■□□ 2.06
NUP50-213ENST00000461437 OSCARQ8IYS5 282 aa27.92■■■□□ 2.06
NUP50-213ENST00000461437 CUX1P39880 1505 aa27.92■■■□□ 2.06
NUP50-213ENST00000461437 FGD5Q6ZNL6 1462 aa27.89■■■□□ 2.05
NUP50-213ENST00000461437 CHD1O14646 1710 aa27.83■■■□□ 2.05
NUP50-213ENST00000461437 SOGA1O94964 1423 aa27.83■■■□□ 2.05
NUP50-213ENST00000461437 TDRD9Q8NDG6 1382 aaKnown RBP27.79■■■□□ 2.04
NUP50-213ENST00000461437 WDR97A6NE52 1622 aa27.72■■■□□ 2.03
NUP50-213ENST00000461437 RIMBP3CA6NJZ7 1639 aa27.68■■■□□ 2.02
NUP50-213ENST00000461437 RIMBP3BA6NNM3 1639 aa27.68■■■□□ 2.02
NUP50-213ENST00000461437 RIMBP3Q9UFD9 1639 aa27.68■■■□□ 2.02
NUP50-213ENST00000461437 FBLN2P98095 1184 aa27.67■■■□□ 2.02
NUP50-213ENST00000461437 SNAPC4Q5SXM2 1469 aa27.64■■■□□ 2.02
NUP50-213ENST00000461437 PBRM1Q86U86 1689 aa27.61■■■□□ 2.01
NUP50-213ENST00000461437 SYNJ1O43426 1573 aa27.58■■■□□ 2.01
NUP50-213ENST00000461437 ARHGEF11O15085 1522 aa27.57■■■□□ 2
NUP50-213ENST00000461437 BIVM-ERCC5R4GMW8 1640 aa27.56■■■□□ 2
NUP50-213ENST00000461437 GRIN2BQ13224 1484 aa27.54■■■□□ 2
NUP50-213ENST00000461437 TOP2BQ02880 1626 aa27.52■■■□□ 2
NUP50-213ENST00000461437 ABCA5Q8WWZ7 1642 aa27.52■■■□□ 2
NUP50-213ENST00000461437 ABCA10Q8WWZ4 1543 aa27.51■■■□□ 2
NUP50-213ENST00000461437 WRNQ14191 1432 aaPredicted RBP eCLIP27.51■■□□□ 1.99
NUP50-213ENST00000461437 GAPVD1Q14C86 1478 aa27.51■■□□□ 1.99
NUP50-213ENST00000461437 MAGI1Q96QZ7 1491 aaPredicted RBP27.49■■□□□ 1.99
NUP50-213ENST00000461437 CHMP7Q8WUX9 453 aaPredicted RBP27.45■■□□□ 1.98
NUP50-213ENST00000461437 SYNJ2O15056 1496 aa27.41■■□□□ 1.98
NUP50-213ENST00000461437 CLASP1Q7Z460 1538 aa27.4■■□□□ 1.98
NUP50-213ENST00000461437 ARAP1Q96P48 1450 aa27.34■■□□□ 1.97
NUP50-213ENST00000461437 CYB5RLQ6IPT4 315 aa27.34■■□□□ 1.97
NUP50-213ENST00000461437 ADAMTS12P58397 1594 aa27.3■■□□□ 1.96
NUP50-213ENST00000461437 GRIN2AQ12879 1464 aa27.21■■□□□ 1.95
NUP50-213ENST00000461437 CEP170Q5SW79 1584 aa27.18■■□□□ 1.94
NUP50-213ENST00000461437 ERICH3Q5RHP9 1530 aa27.16■■□□□ 1.94
NUP50-213ENST00000461437 FHAD1B1AJZ9 1412 aa27.14■■□□□ 1.93
NUP50-213ENST00000461437 ERCC6L2Q5T890 1561 aa27.11■■□□□ 1.93
NUP50-213ENST00000461437 NUP160Q12769 1436 aa27.08■■□□□ 1.93
NUP50-213ENST00000461437 SHROOM2Q13796 1616 aa26.98■■□□□ 1.91
NUP50-213ENST00000461437 TRHP20396 242 aaPredicted RBP26.94■■□□□ 1.9
NUP50-213ENST00000461437 KIF27Q86VH2 1401 aa26.92■■□□□ 1.9
NUP50-213ENST00000461437 RUSC2Q8N2Y8 1516 aa26.9■■□□□ 1.9
NUP50-213ENST00000461437 IGF1RP08069 1367 aa26.9■■□□□ 1.9
NUP50-213ENST00000461437 CUL7Q14999 1698 aa26.88■■□□□ 1.89
Retrieved 100 of 20,778 RNA–protein pairs in 83.1 ms