RNA–Protein interactions for RNA: ENST00000461056.5

SND1-202, Transcript of staphylococcal nuclease and tudor domain containing 1, humanhuman

TSL 4

Gene SND1, Length 555 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SND1-202ENST00000461056 NISCHQ9Y2I1 1504 aa19.91■□□□□ 0.78
SND1-202ENST00000461056 AEBP2Q6ZN18 517 aaPredicted RBP18.6■□□□□ 0.57
SND1-202ENST00000461056 CHIC1Q5VXU3 224 aa17.74■□□□□ 0.43
SND1-202ENST00000461056 CCDC180Q9P1Z9 1646 aa17.58■□□□□ 0.4
SND1-202ENST00000461056 ABCC9O60706 1549 aa17.03■□□□□ 0.32
SND1-202ENST00000461056 ZCCHC6Q5VYS8 1495 aaKnown RBP16.65■□□□□ 0.26
SND1-202ENST00000461056 MYO15BQ96JP2 1530 aa16.55■□□□□ 0.24
SND1-202ENST00000461056 DCAF1Q9Y4B6 1507 aa16.53■□□□□ 0.24
SND1-202ENST00000461056 NACADO15069 1562 aa16.51■□□□□ 0.23
SND1-202ENST00000461056 RB1CC1Q8TDY2 1594 aa16.44■□□□□ 0.22
SND1-202ENST00000461056 DCAF8L2P0C7V8 631 aa16.31■□□□□ 0.2
SND1-202ENST00000461056 BICRAQ9NZM4 1560 aa16.06■□□□□ 0.16
SND1-202ENST00000461056 UNC13AQ9UPW8 1703 aa16.04■□□□□ 0.16
SND1-202ENST00000461056 SCRIBQ14160 1630 aa16.01■□□□□ 0.15
SND1-202ENST00000461056 PABPN1Q86U42 306 aaKnown RBP eCLIP15.93■□□□□ 0.14
SND1-202ENST00000461056 SHROOM4Q9ULL8 1493 aa15.91■□□□□ 0.14
SND1-202ENST00000461056 SENP3Q9H4L4 574 aaPredicted RBP15.78■□□□□ 0.12
SND1-202ENST00000461056 PHF23Q9BUL5 403 aaPredicted RBP15.63■□□□□ 0.09
SND1-202ENST00000461056 DNAJC5BQ9UF47 199 aa15.6■□□□□ 0.09
SND1-202ENST00000461056 EIF4G1Q04637 1599 aaKnown RBP15.56■□□□□ 0.08
SND1-202ENST00000461056 CECR2Q9BXF3 1484 aa15.51■□□□□ 0.07
SND1-202ENST00000461056 CC2D2AQ9P2K1 1620 aa15.43■□□□□ 0.06
SND1-202ENST00000461056 SMARCA4P51532 1647 aa15.38■□□□□ 0.05
SND1-202ENST00000461056 BAZ1AQ9NRL2 1556 aaPredicted RBP15.37■□□□□ 0.05
SND1-202ENST00000461056 MROH2BQ7Z745 1585 aa15.35■□□□□ 0.05
SND1-202ENST00000461056 PEG3Q9GZU2 1588 aa15.31■□□□□ 0.04
SND1-202ENST00000461056 ATAD2BQ9ULI0 1458 aa15.3■□□□□ 0.04
SND1-202ENST00000461056 NCAPD3P42695 1498 aa15.29■□□□□ 0.04
SND1-202ENST00000461056 RSF1Q96T23 1441 aaPredicted RBP15.25■□□□□ 0.03
SND1-202ENST00000461056 SMARCA2P51531 1590 aa15.24■□□□□ 0.03
SND1-202ENST00000461056 HMGXB3Q12766 1538 aa15.21■□□□□ 0.03
SND1-202ENST00000461056 WIZO95785 1651 aa15.12■□□□□ 0.01
SND1-202ENST00000461056 BAZ1BQ9UIG0 1483 aaKnown RBP15.11■□□□□ 0.01
SND1-202ENST00000461056 TOP2AP11388 1531 aaKnown RBP15.02■□□□□ -0
SND1-202ENST00000461056 CCDC88BA6NC98 1476 aa14.84□□□□□ -0.03
SND1-202ENST00000461056 NESP48681 1621 aa14.83□□□□□ -0.04
SND1-202ENST00000461056 CADPSQ9ULU8 1353 aa14.81□□□□□ -0.04
SND1-202ENST00000461056 CFTRP13569 1480 aa14.79□□□□□ -0.04
SND1-202ENST00000461056 LAMC3Q9Y6N6 1575 aa14.78□□□□□ -0.04
SND1-202ENST00000461056 SUPT5HO00267 1087 aaKnown RBP14.78□□□□□ -0.04
SND1-202ENST00000461056 FOXD1Q16676 465 aa14.74□□□□□ -0.05
SND1-202ENST00000461056 PDS5BQ9NTI5 1447 aa14.66□□□□□ -0.06
SND1-202ENST00000461056 FANCD2Q9BXW9 1451 aa14.62□□□□□ -0.07
SND1-202ENST00000461056 ERCC6Q03468 1493 aa14.61□□□□□ -0.07
SND1-202ENST00000461056 THOC2Q8NI27 1593 aaKnown RBP14.59□□□□□ -0.07
SND1-202ENST00000461056 KIF21AQ7Z4S6 1674 aa14.58□□□□□ -0.08
SND1-202ENST00000461056 CEP164Q9UPV0 1460 aa14.56□□□□□ -0.08
SND1-202ENST00000461056 MRC2Q9UBG0 1479 aa14.54□□□□□ -0.08
SND1-202ENST00000461056 PRDM2Q13029 1718 aa14.53□□□□□ -0.08
SND1-202ENST00000461056 WDR62O43379 1518 aa14.52□□□□□ -0.08
SND1-202ENST00000461056 URB2Q14146 1524 aaKnown RBP14.51□□□□□ -0.09
SND1-202ENST00000461056 CUX2O14529 1486 aa14.5□□□□□ -0.09
SND1-202ENST00000461056 TOPBP1Q92547 1522 aa14.41□□□□□ -0.1
SND1-202ENST00000461056 DNMBPQ6XZF7 1577 aa14.4□□□□□ -0.1
SND1-202ENST00000461056 CUX1P39880 1505 aa14.39□□□□□ -0.11
SND1-202ENST00000461056 ABCC8Q09428 1581 aa14.37□□□□□ -0.11
SND1-202ENST00000461056 POLA1P09884 1462 aaPredicted RBP14.32□□□□□ -0.12
SND1-202ENST00000461056 WRNQ14191 1432 aaPredicted RBP eCLIP14.31□□□□□ -0.12
SND1-202ENST00000461056 SYNJ1O43426 1573 aa14.29□□□□□ -0.12
SND1-202ENST00000461056 IFT140Q96RY7 1462 aa14.28□□□□□ -0.12
SND1-202ENST00000461056 TOP2BQ02880 1626 aa14.27□□□□□ -0.12
SND1-202ENST00000461056 TARBP1Q13395 1621 aaKnown RBP14.27□□□□□ -0.12
SND1-202ENST00000461056 FGD5Q6ZNL6 1462 aa14.27□□□□□ -0.12
SND1-202ENST00000461056 BIVM-ERCC5R4GMW8 1640 aa14.26□□□□□ -0.13
SND1-202ENST00000461056 ZNF608Q9ULD9 1512 aaPredicted RBP14.23□□□□□ -0.13
SND1-202ENST00000461056 RAD54L2Q9Y4B4 1467 aa14.23□□□□□ -0.13
SND1-202ENST00000461056 PLPPR3Q6T4P5 718 aa14.2□□□□□ -0.14
SND1-202ENST00000461056 SOGA1O94964 1423 aa14.2□□□□□ -0.14
SND1-202ENST00000461056 ABCA10Q8WWZ4 1543 aa14.19□□□□□ -0.14
SND1-202ENST00000461056 WDR97A6NE52 1622 aa14.16□□□□□ -0.14
SND1-202ENST00000461056 EIF4G3O43432 1585 aaKnown RBP14.13□□□□□ -0.15
SND1-202ENST00000461056 AQRO60306 1485 aaKnown RBP eCLIP14.13□□□□□ -0.154e-9■■■■■ 29.6
SND1-202ENST00000461056 TDRD9Q8NDG6 1382 aaKnown RBP14.12□□□□□ -0.15
SND1-202ENST00000461056 ABCA5Q8WWZ7 1642 aa14.11□□□□□ -0.15
SND1-202ENST00000461056 GRIN2BQ13224 1484 aa14.05□□□□□ -0.16
SND1-202ENST00000461056 GAPVD1Q14C86 1478 aa14.05□□□□□ -0.16
SND1-202ENST00000461056 SNAPC4Q5SXM2 1469 aa14□□□□□ -0.17
SND1-202ENST00000461056 MAGI1Q96QZ7 1491 aaPredicted RBP14□□□□□ -0.17
SND1-202ENST00000461056 ERICH3Q5RHP9 1530 aa13.99□□□□□ -0.17
SND1-202ENST00000461056 IGF1RP08069 1367 aa13.97□□□□□ -0.17
SND1-202ENST00000461056 KIF27Q86VH2 1401 aa13.97□□□□□ -0.17
SND1-202ENST00000461056 TRIM41Q8WV44 630 aa13.95□□□□□ -0.18
SND1-202ENST00000461056 ADAMTS12P58397 1594 aa13.95□□□□□ -0.18
SND1-202ENST00000461056 RUSC2Q8N2Y8 1516 aa13.95□□□□□ -0.18
SND1-202ENST00000461056 PBRM1Q86U86 1689 aa13.95□□□□□ -0.18
SND1-202ENST00000461056 SYNJ2O15056 1496 aa13.94□□□□□ -0.18
SND1-202ENST00000461056 FHAD1B1AJZ9 1412 aa13.91□□□□□ -0.18
SND1-202ENST00000461056 PPP6R1Q9UPN7 881 aa13.9□□□□□ -0.18
SND1-202ENST00000461056 GRIN2AQ12879 1464 aa13.87□□□□□ -0.19
SND1-202ENST00000461056 ADRA2BP18089 450 aa13.87□□□□□ -0.19
SND1-202ENST00000461056 DNAJC5Q9H3Z4 198 aa13.87□□□□□ -0.19
SND1-202ENST00000461056 NUP160Q12769 1436 aa13.86□□□□□ -0.19
SND1-202ENST00000461056 CHD1O14646 1710 aa13.86□□□□□ -0.19
SND1-202ENST00000461056 CLASP1Q7Z460 1538 aa13.85□□□□□ -0.19
SND1-202ENST00000461056 OSCARQ8IYS5 282 aa13.84□□□□□ -0.19
SND1-202ENST00000461056 PRXQ9BXM0 1461 aa13.84□□□□□ -0.19
SND1-202ENST00000461056 CUL7Q14999 1698 aa13.83□□□□□ -0.2
SND1-202ENST00000461056 CHMP7Q8WUX9 453 aaPredicted RBP13.82□□□□□ -0.2
SND1-202ENST00000461056 CARMIL1Q5VZK9 1371 aa13.82□□□□□ -0.2
SND1-202ENST00000461056 EEA1Q15075 1411 aa13.81□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms