RNA–Protein interactions for RNA: ENST00000460767.5

SCAMP4-206, Transcript of secretory carrier membrane protein 4, humanhuman

TSL 4

Gene SCAMP4, Length 569 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAMP4-206ENST00000460767 NISCHQ9Y2I1 1504 aa34.65■■■■□ 3.14
SCAMP4-206ENST00000460767 ABCC9O60706 1549 aa31.6■■■□□ 2.65
SCAMP4-206ENST00000460767 CCDC180Q9P1Z9 1646 aa31.43■■■□□ 2.62
SCAMP4-206ENST00000460767 RB1CC1Q8TDY2 1594 aa30.04■■■□□ 2.4
SCAMP4-206ENST00000460767 DNAJC5BQ9UF47 199 aa30■■■□□ 2.39
SCAMP4-206ENST00000460767 NACADO15069 1562 aa29.76■■■□□ 2.35
SCAMP4-206ENST00000460767 UNC13AQ9UPW8 1703 aa29.37■■■□□ 2.29
SCAMP4-206ENST00000460767 MYO15BQ96JP2 1530 aa29.32■■■□□ 2.28
SCAMP4-206ENST00000460767 PABPN1Q86U42 306 aaKnown RBP eCLIP29.23■■■□□ 2.27
SCAMP4-206ENST00000460767 BICRAQ9NZM4 1560 aa29.18■■■□□ 2.26
SCAMP4-206ENST00000460767 DCAF8L2P0C7V8 631 aa29.06■■■□□ 2.24
SCAMP4-206ENST00000460767 SHROOM4Q9ULL8 1493 aa28.93■■■□□ 2.22
SCAMP4-206ENST00000460767 DCAF1Q9Y4B6 1507 aa28.74■■■□□ 2.19
SCAMP4-206ENST00000460767 ZCCHC6Q5VYS8 1495 aaKnown RBP28.67■■■□□ 2.18
SCAMP4-206ENST00000460767 CC2D2AQ9P2K1 1620 aa28.63■■■□□ 2.17
SCAMP4-206ENST00000460767 CECR2Q9BXF3 1484 aa28.58■■■□□ 2.17
SCAMP4-206ENST00000460767 EIF4G1Q04637 1599 aaKnown RBP28.49■■■□□ 2.15
SCAMP4-206ENST00000460767 SCRIBQ14160 1630 aa28.4■■■□□ 2.14
SCAMP4-206ENST00000460767 DNAJC5Q9H3Z4 198 aa27.97■■■□□ 2.07
SCAMP4-206ENST00000460767 CUX2O14529 1486 aa27.61■■■□□ 2.01
SCAMP4-206ENST00000460767 NCAPD3P42695 1498 aa27.45■■□□□ 1.99
SCAMP4-206ENST00000460767 ERCC6Q03468 1493 aa27.34■■□□□ 1.97
SCAMP4-206ENST00000460767 HMGXB3Q12766 1538 aa27.26■■□□□ 1.96
SCAMP4-206ENST00000460767 ATAD2BQ9ULI0 1458 aa27.25■■□□□ 1.95
SCAMP4-206ENST00000460767 SMARCA2P51531 1590 aa27.21■■□□□ 1.95
SCAMP4-206ENST00000460767 SMARCA4P51532 1647 aa27.15■■□□□ 1.94
SCAMP4-206ENST00000460767 NESP48681 1621 aa27.03■■□□□ 1.92
SCAMP4-206ENST00000460767 THOC2Q8NI27 1593 aaKnown RBP27.01■■□□□ 1.91
SCAMP4-206ENST00000460767 PEG3Q9GZU2 1588 aa27■■□□□ 1.91
SCAMP4-206ENST00000460767 BAZ1AQ9NRL2 1556 aaPredicted RBP26.96■■□□□ 1.91
SCAMP4-206ENST00000460767 BAZ1BQ9UIG0 1483 aaKnown RBP26.94■■□□□ 1.9
SCAMP4-206ENST00000460767 LAMC3Q9Y6N6 1575 aa26.93■■□□□ 1.9
SCAMP4-206ENST00000460767 KIF21AQ7Z4S6 1674 aa26.76■■□□□ 1.87
SCAMP4-206ENST00000460767 PDS5BQ9NTI5 1447 aa26.71■■□□□ 1.87
SCAMP4-206ENST00000460767 MROH2BQ7Z745 1585 aa26.64■■□□□ 1.86
SCAMP4-206ENST00000460767 WDR62O43379 1518 aa26.55■■□□□ 1.84
SCAMP4-206ENST00000460767 CADPSQ9ULU8 1353 aa26.53■■□□□ 1.84
SCAMP4-206ENST00000460767 MRC2Q9UBG0 1479 aa26.53■■□□□ 1.84
SCAMP4-206ENST00000460767 TRIM41Q8WV44 630 aa26.35■■□□□ 1.81
SCAMP4-206ENST00000460767 CEP164Q9UPV0 1460 aa26.31■■□□□ 1.8
SCAMP4-206ENST00000460767 WIZO95785 1651 aa26.28■■□□□ 1.8
SCAMP4-206ENST00000460767 FANCD2Q9BXW9 1451 aa26.22■■□□□ 1.79
SCAMP4-206ENST00000460767 CFTRP13569 1480 aa26.18■■□□□ 1.78
SCAMP4-206ENST00000460767 OSCARQ8IYS5 282 aa26.09■■□□□ 1.77
SCAMP4-206ENST00000460767 URB2Q14146 1524 aaKnown RBP26.04■■□□□ 1.76
SCAMP4-206ENST00000460767 TOP2AP11388 1531 aaKnown RBP26.01■■□□□ 1.75
SCAMP4-206ENST00000460767 PRDM2Q13029 1718 aa25.97■■□□□ 1.75
SCAMP4-206ENST00000460767 RSF1Q96T23 1441 aaPredicted RBP25.92■■□□□ 1.74
SCAMP4-206ENST00000460767 RIMBP3CA6NJZ7 1639 aa25.91■■□□□ 1.74
SCAMP4-206ENST00000460767 RIMBP3BA6NNM3 1639 aa25.91■■□□□ 1.74
SCAMP4-206ENST00000460767 RIMBP3Q9UFD9 1639 aa25.91■■□□□ 1.74
SCAMP4-206ENST00000460767 IFT140Q96RY7 1462 aa25.84■■□□□ 1.73
SCAMP4-206ENST00000460767 ARHGEF11O15085 1522 aa25.78■■□□□ 1.72
SCAMP4-206ENST00000460767 ZNF608Q9ULD9 1512 aaPredicted RBP25.75■■□□□ 1.71
SCAMP4-206ENST00000460767 TOPBP1Q92547 1522 aa25.69■■□□□ 1.7
SCAMP4-206ENST00000460767 EIF4G3O43432 1585 aaKnown RBP25.68■■□□□ 1.7
SCAMP4-206ENST00000460767 ABCC8Q09428 1581 aa25.68■■□□□ 1.7
SCAMP4-206ENST00000460767 CCDC88BA6NC98 1476 aa25.62■■□□□ 1.69
SCAMP4-206ENST00000460767 DNMBPQ6XZF7 1577 aa25.61■■□□□ 1.69
SCAMP4-206ENST00000460767 CHD1O14646 1710 aa25.55■■□□□ 1.68
SCAMP4-206ENST00000460767 TARBP1Q13395 1621 aaKnown RBP25.55■■□□□ 1.68
SCAMP4-206ENST00000460767 ARAP1Q96P48 1450 aa25.48■■□□□ 1.67
SCAMP4-206ENST00000460767 CYB5RLQ6IPT4 315 aa25.42■■□□□ 1.66
SCAMP4-206ENST00000460767 AQRO60306 1485 aaKnown RBP eCLIP25.41■■□□□ 1.662e-7■■■■■ 46.8
SCAMP4-206ENST00000460767 POLA1P09884 1462 aaPredicted RBP25.4■■□□□ 1.66
SCAMP4-206ENST00000460767 WDR97A6NE52 1622 aa25.39■■□□□ 1.66
SCAMP4-206ENST00000460767 CLASP1Q7Z460 1538 aa25.31■■□□□ 1.64
SCAMP4-206ENST00000460767 TRHP20396 242 aaPredicted RBP25.24■■□□□ 1.63
SCAMP4-206ENST00000460767 RAD54L2Q9Y4B4 1467 aa25.22■■□□□ 1.63
SCAMP4-206ENST00000460767 SYNJ1O43426 1573 aa25.22■■□□□ 1.63
SCAMP4-206ENST00000460767 SNAPC4Q5SXM2 1469 aa25.21■■□□□ 1.63
SCAMP4-206ENST00000460767 MAGI1Q96QZ7 1491 aaPredicted RBP25.21■■□□□ 1.63
SCAMP4-206ENST00000460767 SOGA1O94964 1423 aa25.2■■□□□ 1.63
SCAMP4-206ENST00000460767 FBLN2P98095 1184 aa25.19■■□□□ 1.62
SCAMP4-206ENST00000460767 TDRD9Q8NDG6 1382 aaKnown RBP25.17■■□□□ 1.62
SCAMP4-206ENST00000460767 FGD5Q6ZNL6 1462 aa25.15■■□□□ 1.62
SCAMP4-206ENST00000460767 GRIN2BQ13224 1484 aa25.11■■□□□ 1.61
SCAMP4-206ENST00000460767 SYNJ2O15056 1496 aa25.1■■□□□ 1.61
SCAMP4-206ENST00000460767 CUX1P39880 1505 aa25.07■■□□□ 1.6
SCAMP4-206ENST00000460767 CHMP7Q8WUX9 453 aaPredicted RBP25.04■■□□□ 1.6
SCAMP4-206ENST00000460767 PBRM1Q86U86 1689 aa25.02■■□□□ 1.6
SCAMP4-206ENST00000460767 GAPVD1Q14C86 1478 aa24.96■■□□□ 1.59
SCAMP4-206ENST00000460767 ABCA5Q8WWZ7 1642 aa24.94■■□□□ 1.58
SCAMP4-206ENST00000460767 ABCA10Q8WWZ4 1543 aa24.91■■□□□ 1.58
SCAMP4-206ENST00000460767 AEBP2Q6ZN18 517 aaPredicted RBP24.86■■□□□ 1.57
SCAMP4-206ENST00000460767 GRIN2AQ12879 1464 aa24.8■■□□□ 1.56
SCAMP4-206ENST00000460767 NUP160Q12769 1436 aa24.78■■□□□ 1.56
SCAMP4-206ENST00000460767 ADAMTS12P58397 1594 aa24.77■■□□□ 1.56
SCAMP4-206ENST00000460767 SHROOM2Q13796 1616 aa24.77■■□□□ 1.56
SCAMP4-206ENST00000460767 ERCC6L2Q5T890 1561 aa24.76■■□□□ 1.55
SCAMP4-206ENST00000460767 CEP170Q5SW79 1584 aa24.75■■□□□ 1.55
SCAMP4-206ENST00000460767 WRNQ14191 1432 aaPredicted RBP eCLIP24.65■■□□□ 1.54
SCAMP4-206ENST00000460767 BIVM-ERCC5R4GMW8 1640 aa24.64■■□□□ 1.53
SCAMP4-206ENST00000460767 FHAD1B1AJZ9 1412 aa24.63■■□□□ 1.53
SCAMP4-206ENST00000460767 KIF13AQ9H1H9 1805 aa24.63■■□□□ 1.53
SCAMP4-206ENST00000460767 ERICH3Q5RHP9 1530 aa24.61■■□□□ 1.53
SCAMP4-206ENST00000460767 TOP2BQ02880 1626 aa24.6■■□□□ 1.53
SCAMP4-206ENST00000460767 SUPT5HO00267 1087 aaKnown RBP24.5■■□□□ 1.51
SCAMP4-206ENST00000460767 MAPKBP1O60336 1514 aa24.45■■□□□ 1.51
SCAMP4-206ENST00000460767 PRG4Q92954 1404 aaPredicted RBP24.45■■□□□ 1.51
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms