RNA–Protein interactions for RNA: ENST00000460739.5

SOX2-OT-201, SOX2 overlapping transcript, humanhuman

TSL 4 BASIC

Gene SOX2-OT, Length 609 nt, Biotype sense overlapping.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2-OT-201ENST00000460739 NISCHQ9Y2I1 1504 aa29.4■■■□□ 2.3
SOX2-OT-201ENST00000460739 CCDC180Q9P1Z9 1646 aa26.37■■□□□ 1.81
SOX2-OT-201ENST00000460739 ABCC9O60706 1549 aa26.05■■□□□ 1.76
SOX2-OT-201ENST00000460739 RB1CC1Q8TDY2 1594 aa24.95■■□□□ 1.58
SOX2-OT-201ENST00000460739 NACADO15069 1562 aa24.84■■□□□ 1.57
SOX2-OT-201ENST00000460739 DCAF8L2P0C7V8 631 aa24.62■■□□□ 1.53
SOX2-OT-201ENST00000460739 MYO15BQ96JP2 1530 aa24.58■■□□□ 1.53
SOX2-OT-201ENST00000460739 UNC13AQ9UPW8 1703 aa24.45■■□□□ 1.5
SOX2-OT-201ENST00000460739 ZCCHC6Q5VYS8 1495 aaKnown RBP24.42■■□□□ 1.5
SOX2-OT-201ENST00000460739 DCAF1Q9Y4B6 1507 aa24.35■■□□□ 1.49
SOX2-OT-201ENST00000460739 PABPN1Q86U42 306 aaKnown RBP eCLIP24.25■■□□□ 1.47
SOX2-OT-201ENST00000460739 DNAJC5BQ9UF47 199 aa24.23■■□□□ 1.47
SOX2-OT-201ENST00000460739 BICRAQ9NZM4 1560 aa24.23■■□□□ 1.47
SOX2-OT-201ENST00000460739 SCRIBQ14160 1630 aa23.96■■□□□ 1.43
SOX2-OT-201ENST00000460739 SHROOM4Q9ULL8 1493 aa23.94■■□□□ 1.42
SOX2-OT-201ENST00000460739 EIF4G1Q04637 1599 aaKnown RBP23.6■■□□□ 1.37
SOX2-OT-201ENST00000460739 CC2D2AQ9P2K1 1620 aa23.59■■□□□ 1.37
SOX2-OT-201ENST00000460739 CECR2Q9BXF3 1484 aa23.46■■□□□ 1.35
SOX2-OT-201ENST00000460739 SMARCA4P51532 1647 aa22.92■■□□□ 1.26
SOX2-OT-201ENST00000460739 NCAPD3P42695 1498 aa22.91■■□□□ 1.26
SOX2-OT-201ENST00000460739 ATAD2BQ9ULI0 1458 aa22.85■■□□□ 1.25
SOX2-OT-201ENST00000460739 BAZ1AQ9NRL2 1556 aaPredicted RBP22.83■■□□□ 1.25
SOX2-OT-201ENST00000460739 SMARCA2P51531 1590 aa22.82■■□□□ 1.24
SOX2-OT-201ENST00000460739 HMGXB3Q12766 1538 aa22.78■■□□□ 1.24
SOX2-OT-201ENST00000460739 PEG3Q9GZU2 1588 aa22.72■■□□□ 1.23
SOX2-OT-201ENST00000460739 MROH2BQ7Z745 1585 aa22.65■■□□□ 1.22
SOX2-OT-201ENST00000460739 BAZ1BQ9UIG0 1483 aaKnown RBP22.64■■□□□ 1.21
SOX2-OT-201ENST00000460739 ERCC6Q03468 1493 aa22.47■■□□□ 1.19
SOX2-OT-201ENST00000460739 NESP48681 1621 aa22.46■■□□□ 1.19
SOX2-OT-201ENST00000460739 WIZO95785 1651 aa22.41■■□□□ 1.18
SOX2-OT-201ENST00000460739 CUX2O14529 1486 aa22.41■■□□□ 1.18
SOX2-OT-201ENST00000460739 LAMC3Q9Y6N6 1575 aa22.38■■□□□ 1.17
SOX2-OT-201ENST00000460739 RSF1Q96T23 1441 aaPredicted RBP22.24■■□□□ 1.15
SOX2-OT-201ENST00000460739 THOC2Q8NI27 1593 aaKnown RBP22.24■■□□□ 1.15
SOX2-OT-201ENST00000460739 KIF21AQ7Z4S6 1674 aa22.23■■□□□ 1.15
SOX2-OT-201ENST00000460739 PDS5BQ9NTI5 1447 aa22.2■■□□□ 1.14
SOX2-OT-201ENST00000460739 CADPSQ9ULU8 1353 aa22.19■■□□□ 1.14
SOX2-OT-201ENST00000460739 TOP2AP11388 1531 aaKnown RBP22.14■■□□□ 1.13
SOX2-OT-201ENST00000460739 DNAJC5Q9H3Z4 198 aa22.12■■□□□ 1.13
SOX2-OT-201ENST00000460739 CFTRP13569 1480 aa22.01■■□□□ 1.11
SOX2-OT-201ENST00000460739 MRC2Q9UBG0 1479 aa22.01■■□□□ 1.11
SOX2-OT-201ENST00000460739 WDR62O43379 1518 aa21.97■■□□□ 1.11
SOX2-OT-201ENST00000460739 CEP164Q9UPV0 1460 aa21.96■■□□□ 1.11
SOX2-OT-201ENST00000460739 FANCD2Q9BXW9 1451 aa21.95■■□□□ 1.1
SOX2-OT-201ENST00000460739 PRDM2Q13029 1718 aa21.9■■□□□ 1.1
SOX2-OT-201ENST00000460739 CCDC88BA6NC98 1476 aa21.86■■□□□ 1.09
SOX2-OT-201ENST00000460739 URB2Q14146 1524 aaKnown RBP21.76■■□□□ 1.07
SOX2-OT-201ENST00000460739 TOPBP1Q92547 1522 aa21.56■■□□□ 1.04
SOX2-OT-201ENST00000460739 ABCC8Q09428 1581 aa21.55■■□□□ 1.04
SOX2-OT-201ENST00000460739 DNMBPQ6XZF7 1577 aa21.53■■□□□ 1.04
SOX2-OT-201ENST00000460739 IFT140Q96RY7 1462 aa21.51■■□□□ 1.03
SOX2-OT-201ENST00000460739 ZNF608Q9ULD9 1512 aaPredicted RBP21.45■■□□□ 1.02
SOX2-OT-201ENST00000460739 TARBP1Q13395 1621 aaKnown RBP21.4■■□□□ 1.02
SOX2-OT-201ENST00000460739 EIF4G3O43432 1585 aaKnown RBP21.38■■□□□ 1.01
SOX2-OT-201ENST00000460739 OSCARQ8IYS5 282 aa21.37■■□□□ 1.01
SOX2-OT-201ENST00000460739 POLA1P09884 1462 aaPredicted RBP21.36■■□□□ 1.01
SOX2-OT-201ENST00000460739 SUPT5HO00267 1087 aaKnown RBP21.34■■□□□ 1.01
SOX2-OT-201ENST00000460739 CUX1P39880 1505 aa21.27■■□□□ 1
SOX2-OT-201ENST00000460739 AQRO60306 1485 aaKnown RBP eCLIP21.26■□□□□ 0.996e-18■■■■□ 26.1
SOX2-OT-201ENST00000460739 FGD5Q6ZNL6 1462 aa21.25■□□□□ 0.99
SOX2-OT-201ENST00000460739 RAD54L2Q9Y4B4 1467 aa21.25■□□□□ 0.99
SOX2-OT-201ENST00000460739 SOGA1O94964 1423 aa21.24■□□□□ 0.99
SOX2-OT-201ENST00000460739 WDR97A6NE52 1622 aa21.22■□□□□ 0.99
SOX2-OT-201ENST00000460739 CHD1O14646 1710 aa21.21■□□□□ 0.99
SOX2-OT-201ENST00000460739 TRIM41Q8WV44 630 aa21.18■□□□□ 0.98
SOX2-OT-201ENST00000460739 TDRD9Q8NDG6 1382 aaKnown RBP21.15■□□□□ 0.98
SOX2-OT-201ENST00000460739 RIMBP3CA6NJZ7 1639 aa21.13■□□□□ 0.97
SOX2-OT-201ENST00000460739 RIMBP3BA6NNM3 1639 aa21.13■□□□□ 0.97
SOX2-OT-201ENST00000460739 RIMBP3Q9UFD9 1639 aa21.13■□□□□ 0.97
SOX2-OT-201ENST00000460739 ARHGEF11O15085 1522 aa21.07■□□□□ 0.96
SOX2-OT-201ENST00000460739 SNAPC4Q5SXM2 1469 aa21.07■□□□□ 0.96
SOX2-OT-201ENST00000460739 GRIN2BQ13224 1484 aa21.05■□□□□ 0.96
SOX2-OT-201ENST00000460739 MAGI1Q96QZ7 1491 aaPredicted RBP21.05■□□□□ 0.96
SOX2-OT-201ENST00000460739 PBRM1Q86U86 1689 aa21.05■□□□□ 0.96
SOX2-OT-201ENST00000460739 FBLN2P98095 1184 aa21.04■□□□□ 0.96
SOX2-OT-201ENST00000460739 BIVM-ERCC5R4GMW8 1640 aa21.04■□□□□ 0.96
SOX2-OT-201ENST00000460739 ABCA10Q8WWZ4 1543 aa21.03■□□□□ 0.96
SOX2-OT-201ENST00000460739 TOP2BQ02880 1626 aa21.02■□□□□ 0.96
SOX2-OT-201ENST00000460739 ABCA5Q8WWZ7 1642 aa21.01■□□□□ 0.95
SOX2-OT-201ENST00000460739 GAPVD1Q14C86 1478 aa21■□□□□ 0.95
SOX2-OT-201ENST00000460739 SYNJ1O43426 1573 aa20.98■□□□□ 0.95
SOX2-OT-201ENST00000460739 WRNQ14191 1432 aaPredicted RBP eCLIP20.97■□□□□ 0.95
SOX2-OT-201ENST00000460739 SYNJ2O15056 1496 aa20.96■□□□□ 0.95
SOX2-OT-201ENST00000460739 CLASP1Q7Z460 1538 aa20.94■□□□□ 0.94
SOX2-OT-201ENST00000460739 CHMP7Q8WUX9 453 aaPredicted RBP20.94■□□□□ 0.94
SOX2-OT-201ENST00000460739 ARAP1Q96P48 1450 aa20.87■□□□□ 0.93
SOX2-OT-201ENST00000460739 CYB5RLQ6IPT4 315 aa20.83■□□□□ 0.93
SOX2-OT-201ENST00000460739 ADAMTS12P58397 1594 aa20.82■□□□□ 0.92
SOX2-OT-201ENST00000460739 ERICH3Q5RHP9 1530 aa20.79■□□□□ 0.92
SOX2-OT-201ENST00000460739 GRIN2AQ12879 1464 aa20.79■□□□□ 0.92
SOX2-OT-201ENST00000460739 FHAD1B1AJZ9 1412 aa20.74■□□□□ 0.91
SOX2-OT-201ENST00000460739 CEP170Q5SW79 1584 aa20.72■□□□□ 0.91
SOX2-OT-201ENST00000460739 NUP160Q12769 1436 aa20.71■□□□□ 0.91
SOX2-OT-201ENST00000460739 SHROOM2Q13796 1616 aa20.64■□□□□ 0.9
SOX2-OT-201ENST00000460739 ERCC6L2Q5T890 1561 aa20.6■□□□□ 0.89
SOX2-OT-201ENST00000460739 KIF27Q86VH2 1401 aa20.56■□□□□ 0.88
SOX2-OT-201ENST00000460739 CUL7Q14999 1698 aa20.55■□□□□ 0.88
SOX2-OT-201ENST00000460739 RUSC2Q8N2Y8 1516 aa20.53■□□□□ 0.88
SOX2-OT-201ENST00000460739 IGF1RP08069 1367 aa20.52■□□□□ 0.88
SOX2-OT-201ENST00000460739 TRHP20396 242 aaPredicted RBP20.52■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 9.5 ms