RNA–Protein interactions for RNA: ENST00000458748.1

SCARNA2-201, small Cajal body-specific RNA 2, humanhuman

BASIC

Gene SCARNA2, Length 420 nt, Biotype scaRNA, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCARNA2-201ENST00000458748 DKC1O60832 514 aaKnown RBP eCLIP19.74■□□□□ 0.75<1e-323■■■■■ 137.3
SCARNA2-201ENST00000458748 NOLC1Q14978 699 aaKnown RBP eCLIP19.18■□□□□ 0.66<1e-323■■■■■ 120.5
SCARNA2-201ENST00000458748 TARDBPQ13148 414 aaKnown RBP eCLIP17.5■□□□□ 0.39<1e-323■■■■■ 85
SCARNA2-201ENST00000458748 SMNDC1O75940 238 aaKnown RBP eCLIP15.75■□□□□ 0.11<1e-323■■■■■ 75.3
SCARNA2-201ENST00000458748 AATFQ9NY61 560 aaKnown RBP eCLIP21.32■■□□□ 1<1e-323■■■■■ 63.5
SCARNA2-201ENST00000458748 EIF4G2P78344 907 aaKnown RBP eCLIP24.39■■□□□ 1.49<1e-323■■■■■ 62.3
SCARNA2-201ENST00000458748 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP17.54■□□□□ 0.4<1e-323■■■■■ 60.1
SCARNA2-201ENST00000458748 SF3A3Q12874 501 aaKnown RBP eCLIP15.45■□□□□ 0.06<1e-323■■■■■ 51.3
SCARNA2-201ENST00000458748 SERBP1Q8NC51 408 aaKnown RBP eCLIP16.95■□□□□ 0.3<1e-323■■■■■ 26.9
SCARNA2-201ENST00000458748 SRSF7Q16629 238 aaKnown RBP eCLIP13.84□□□□□ -0.19<1e-323■■■■□ 26.4
SCARNA2-201ENST00000458748 PTBP1P26599 531 aaKnown RBP eCLIP13.4□□□□□ -0.26<1e-323■■■■□ 25.5
SCARNA2-201ENST00000458748 PHF6Q8IWS0 365 aaKnown RBP eCLIP19.99■□□□□ 0.79<1e-323■■■■□ 19.3
SCARNA2-201ENST00000458748 LSM11P83369 360 aaKnown RBP eCLIP15.14■□□□□ 0.01<1e-323■■■□□ 17
SCARNA2-201ENST00000458748 TROVE2P10155 538 aaKnown RBP eCLIP15.63■□□□□ 0.09<1e-323■■■□□ 16.3
SCARNA2-201ENST00000458748 SF3B4Q15427 424 aaKnown RBP eCLIP16.05■□□□□ 0.16<1e-323■■■□□ 15.9
SCARNA2-201ENST00000458748 UPF1Q92900 1129 aaKnown RBP eCLIP25.18■■□□□ 1.62<1e-323■■■□□ 15
SCARNA2-201ENST00000458748 NOL12Q9UGY1 213 aaKnown RBP eCLIP16.18■□□□□ 0.18<1e-323■■■□□ 14.6
SCARNA2-201ENST00000458748 BCCIPQ9P287 314 aaKnown RBP eCLIP18.26■□□□□ 0.51<1e-323■■□□□ 13.4
SCARNA2-201ENST00000458748 TIAL1Q01085 375 aaKnown RBP eCLIP16.75■□□□□ 0.27<1e-323■■□□□ 12.6
SCARNA2-201ENST00000458748 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP17.41■□□□□ 0.38<1e-323■■□□□ 12.1
SCARNA2-201ENST00000458748 NIPBLQ6KC79 2804 aaeCLIP15.36■□□□□ 0.05<1e-323■■□□□ 11.7
SCARNA2-201ENST00000458748 EIF3GO75821 320 aaKnown RBP eCLIP12.32□□□□□ -0.44<1e-323■■□□□ 11.5
SCARNA2-201ENST00000458748 UTP18Q9Y5J1 556 aaKnown RBP eCLIP18.53■□□□□ 0.56<1e-323■□□□□ 11.1
SCARNA2-201ENST00000458748 LARP7Q4G0J3 582 aaKnown RBP eCLIP17.04■□□□□ 0.32<1e-323■□□□□ 11
SCARNA2-201ENST00000458748 UTP3Q9NQZ2 479 aaKnown RBP eCLIP18.58■□□□□ 0.56<1e-323■□□□□ 10.5
SCARNA2-201ENST00000458748 WDR43Q15061 677 aaKnown RBP eCLIP23.15■■□□□ 1.3<1e-323■□□□□ 10.3
SCARNA2-201ENST00000458748 AARSP49588 968 aaKnown RBP eCLIP18.96■□□□□ 0.63<1e-323■□□□□ 10.3
SCARNA2-201ENST00000458748 RBFOX2O43251 390 aaKnown RBP eCLIP13.57□□□□□ -0.24<1e-323■□□□□ 10.1
SCARNA2-201ENST00000458748 FTOQ9C0B1 505 aaKnown RBP eCLIP19.94■□□□□ 0.78<1e-323■□□□□ 9.9
SCARNA2-201ENST00000458748 WDR3Q9UNX4 943 aaKnown RBP eCLIP18.39■□□□□ 0.53<1e-323■□□□□ 9.7
SCARNA2-201ENST00000458748 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP28.37■■■□□ 2.13<1e-323■□□□□ 9.1
SCARNA2-201ENST00000458748 NKRFO15226 690 aaKnown RBP eCLIP20.3■□□□□ 0.84<1e-323■□□□□ 9
SCARNA2-201ENST00000458748 XRN2Q9H0D6 950 aaKnown RBP eCLIP20.77■□□□□ 0.92<1e-323■□□□□ 9
SCARNA2-201ENST00000458748 DDX51Q8N8A6 666 aaKnown RBP eCLIP18.16■□□□□ 0.5<1e-323■□□□□ 8.9
SCARNA2-201ENST00000458748 EFTUD2Q15029 972 aaKnown RBP eCLIP16.56■□□□□ 0.24<1e-323■□□□□ 8.9
SCARNA2-201ENST00000458748 SLTMQ9NWH9 1034 aaKnown RBP eCLIP18.2■□□□□ 0.5<1e-323■□□□□ 8.9
SCARNA2-201ENST00000458748 PCBP1Q15365 356 aaKnown RBP eCLIP19.52■□□□□ 0.72<1e-323■□□□□ 8.8
SCARNA2-201ENST00000458748 RBM22Q9NW64 420 aaKnown RBP eCLIP17.61■□□□□ 0.41<1e-323■□□□□ 8.6
SCARNA2-201ENST00000458748 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP16.53■□□□□ 0.24<1e-323■□□□□ 8.4
SCARNA2-201ENST00000458748 ABCF1Q8NE71 845 aaKnown RBP eCLIP26.28■■□□□ 1.8<1e-323■□□□□ 8.1
Retrieved 40 of 40 RNA–protein pairs in 8.3 ms