RNA–Protein interactions for RNA: ENST00000454568.1

RFC3P1-201, Transcript of replication factor C 3 pseudogene 1, humanhuman

BASIC

Gene RFC3P1, Length 682 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFC3P1-201ENST00000454568 AEBP2Q6ZN18 517 aaPredicted RBP33.28■■■□□ 2.92
RFC3P1-201ENST00000454568 CHIC1Q5VXU3 224 aa31.58■■■□□ 2.65
RFC3P1-201ENST00000454568 SENP3Q9H4L4 574 aaPredicted RBP28.64■■■□□ 2.18
RFC3P1-201ENST00000454568 PHF23Q9BUL5 403 aaPredicted RBP28.14■■■□□ 2.1
RFC3P1-201ENST00000454568 FOXD1Q16676 465 aa26.57■■□□□ 1.84
RFC3P1-201ENST00000454568 PLPPR3Q6T4P5 718 aa25.24■■□□□ 1.63
RFC3P1-201ENST00000454568 MSH5O43196 834 aa25.11■■□□□ 1.61
RFC3P1-201ENST00000454568 PIAS4Q8N2W9 510 aaPredicted RBP24.87■■□□□ 1.57
RFC3P1-201ENST00000454568 POTEDQ86YR6 584 aa24.65■■□□□ 1.54
RFC3P1-201ENST00000454568 PPP6R1Q9UPN7 881 aa24.63■■□□□ 1.53
RFC3P1-201ENST00000454568 ADRA2BP18089 450 aa24.58■■□□□ 1.53
RFC3P1-201ENST00000454568 SCAF1Q9H7N4 1312 aaKnown RBP22.75■■□□□ 1.23
RFC3P1-201ENST00000454568 DMRT2Q9Y5R5 561 aa22.63■■□□□ 1.21
RFC3P1-201ENST00000454568 MAPK8IP2Q13387 824 aaPredicted RBP22.59■■□□□ 1.21
RFC3P1-201ENST00000454568 PPP4R3CPQ6ZMV5 832 aa22.02■■□□□ 1.12
RFC3P1-201ENST00000454568 HOXD11P31277 338 aaPredicted RBP21.73■■□□□ 1.07
RFC3P1-201ENST00000454568 DCAF8L1A6NGE4 600 aa21.72■■□□□ 1.07
RFC3P1-201ENST00000454568 CNKSR2Q8WXI2 1034 aa21.71■■□□□ 1.07
RFC3P1-201ENST00000454568 CACNB1Q02641 598 aaPredicted RBP21.59■■□□□ 1.05
RFC3P1-201ENST00000454568 RNF216Q9NWF9 866 aaPredicted RBP21.55■■□□□ 1.04
RFC3P1-201ENST00000454568 RNF39Q9H2S5 420 aa21.31■■□□□ 1
RFC3P1-201ENST00000454568 NCBP3Q53F19 620 aaKnown RBP21.27■■□□□ 1
RFC3P1-201ENST00000454568 DNAJC5BQ9UF47 199 aa21.14■□□□□ 0.97
RFC3P1-201ENST00000454568 C1QBPQ07021 282 aaKnown RBP21.09■□□□□ 0.97
RFC3P1-201ENST00000454568 NISCHQ9Y2I1 1504 aa20.9■□□□□ 0.94
RFC3P1-201ENST00000454568 NPM3O75607 178 aaKnown RBP20.79■□□□□ 0.92
RFC3P1-201ENST00000454568 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.75■□□□□ 0.91
RFC3P1-201ENST00000454568 KCNA4P22459 653 aa20.2■□□□□ 0.82
RFC3P1-201ENST00000454568 U3KPZ7 1027 aaPredicted RBP20.19■□□□□ 0.82
RFC3P1-201ENST00000454568 CAPN15O75808 1086 aa20.01■□□□□ 0.79
RFC3P1-201ENST00000454568 SPINK5Q9NQ38 1064 aaPredicted RBP19.92■□□□□ 0.78
RFC3P1-201ENST00000454568 APLP2Q06481 763 aa19.89■□□□□ 0.77
RFC3P1-201ENST00000454568 DSG3P32926 999 aa19.88■□□□□ 0.77
RFC3P1-201ENST00000454568 SLC4A2P04920 1241 aa19.85■□□□□ 0.77
RFC3P1-201ENST00000454568 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.79■□□□□ 0.76
RFC3P1-201ENST00000454568 HNRNPUL2Q1KMD3 747 aaKnown RBP19.79■□□□□ 0.76
RFC3P1-201ENST00000454568 ZNF219Q9P2Y4 722 aaPredicted RBP19.68■□□□□ 0.74
RFC3P1-201ENST00000454568 SAMD1Q6SPF0 538 aaPredicted RBP19.62■□□□□ 0.73
RFC3P1-201ENST00000454568 TRHP20396 242 aaPredicted RBP19.61■□□□□ 0.73
RFC3P1-201ENST00000454568 ABCB7O75027 752 aa19.44■□□□□ 0.7
RFC3P1-201ENST00000454568 MYCNP04198 464 aaPredicted RBP19.33■□□□□ 0.68
RFC3P1-201ENST00000454568 POTEHQ6S545 545 aa19.33■□□□□ 0.68
RFC3P1-201ENST00000454568 RBM42Q9BTD8 480 aaKnown RBP19.14■□□□□ 0.65
RFC3P1-201ENST00000454568 SLC4A1APQ9BWU0 796 aaKnown RBP19.12■□□□□ 0.65
RFC3P1-201ENST00000454568 POLA2Q14181 598 aa19.05■□□□□ 0.64
RFC3P1-201ENST00000454568 FOXD4L1Q9NU39 408 aa19.02■□□□□ 0.64
RFC3P1-201ENST00000454568 ZBTB12Q9Y330 459 aaPredicted RBP18.82■□□□□ 0.6
RFC3P1-201ENST00000454568 ATF5Q9Y2D1 282 aaPredicted RBP18.7■□□□□ 0.58
RFC3P1-201ENST00000454568 CCDC180Q9P1Z9 1646 aa18.68■□□□□ 0.58
RFC3P1-201ENST00000454568 CHRDL2Q6WN34 429 aa18.67■□□□□ 0.58
RFC3P1-201ENST00000454568 ABCC9O60706 1549 aa18.6■□□□□ 0.57
RFC3P1-201ENST00000454568 AKT1S1Q96B36 256 aa18.6■□□□□ 0.57
RFC3P1-201ENST00000454568 ATXN8OSP0DMR3 200 aa18.52■□□□□ 0.56
RFC3P1-201ENST00000454568 ZBTB22O15209 634 aa18.49■□□□□ 0.55
RFC3P1-201ENST00000454568 OSCARQ8IYS5 282 aa18.42■□□□□ 0.54
RFC3P1-201ENST00000454568 REM2Q8IYK8 340 aaPredicted RBP18.35■□□□□ 0.53
RFC3P1-201ENST00000454568 FBLN2P98095 1184 aa18.23■□□□□ 0.51
RFC3P1-201ENST00000454568 SPDYE2BA6NHP3 402 aa18.14■□□□□ 0.49
RFC3P1-201ENST00000454568 SPDYE6P0CI01 402 aa18.14■□□□□ 0.49
RFC3P1-201ENST00000454568 SPDYE2Q495Y8 402 aa18.14■□□□□ 0.49
RFC3P1-201ENST00000454568 PIP4P2Q8N4L2 257 aa18.14■□□□□ 0.49
RFC3P1-201ENST00000454568 PITPNM1O00562 1244 aa18.13■□□□□ 0.49
RFC3P1-201ENST00000454568 SP7Q8TDD2 431 aaPredicted RBP18.06■□□□□ 0.48
RFC3P1-201ENST00000454568 FXR2P51116 673 aaKnown RBP eCLIP18.03■□□□□ 0.48
RFC3P1-201ENST00000454568 HAX1O00165 279 aa17.92■□□□□ 0.46
RFC3P1-201ENST00000454568 SPDYE1Q8NFV5 336 aaPredicted RBP17.88■□□□□ 0.45
RFC3P1-201ENST00000454568 MKRN4PQ13434 485 aaPredicted RBP17.87■□□□□ 0.45
RFC3P1-201ENST00000454568 ZNF692Q9BU19 519 aaPredicted RBP17.86■□□□□ 0.45
RFC3P1-201ENST00000454568 SSUH2Q9Y2M2 353 aa17.81■□□□□ 0.44
RFC3P1-201ENST00000454568 CLEC11AQ9Y240 323 aa17.79■□□□□ 0.44
RFC3P1-201ENST00000454568 DCAF8L2P0C7V8 631 aa17.77■□□□□ 0.44
RFC3P1-201ENST00000454568 RB1CC1Q8TDY2 1594 aa17.74■□□□□ 0.43
RFC3P1-201ENST00000454568 PRKAR2AP13861 404 aaKnown RBP17.7■□□□□ 0.42
RFC3P1-201ENST00000454568 NACADO15069 1562 aa17.64■□□□□ 0.41
RFC3P1-201ENST00000454568 PABPN1Q86U42 306 aaKnown RBP eCLIP17.55■□□□□ 0.4
RFC3P1-201ENST00000454568 CSRNP3Q8WYN3 585 aa17.54■□□□□ 0.4
RFC3P1-201ENST00000454568 PRR29P0C7W0 189 aa17.51■□□□□ 0.39
RFC3P1-201ENST00000454568 EVX2Q03828 476 aa17.51■□□□□ 0.39
RFC3P1-201ENST00000454568 C19orf67A6NJJ6 358 aa17.46■□□□□ 0.39
RFC3P1-201ENST00000454568 MYO15BQ96JP2 1530 aa17.4■□□□□ 0.38
RFC3P1-201ENST00000454568 CHADLQ6NUI6 762 aa17.37■□□□□ 0.37
RFC3P1-201ENST00000454568 ZCCHC6Q5VYS8 1495 aaKnown RBP17.33■□□□□ 0.37
RFC3P1-201ENST00000454568 UNC13AQ9UPW8 1703 aa17.32■□□□□ 0.36
RFC3P1-201ENST00000454568 EHMT2Q96KQ7 1210 aa17.24■□□□□ 0.35
RFC3P1-201ENST00000454568 DCAF1Q9Y4B6 1507 aa17.24■□□□□ 0.35
RFC3P1-201ENST00000454568 GABBR2O75899 941 aa17.23■□□□□ 0.35
RFC3P1-201ENST00000454568 FARP1Q9Y4F1 1045 aaPredicted RBP17.19■□□□□ 0.34
RFC3P1-201ENST00000454568 STAG3Q9UJ98 1225 aa17.18■□□□□ 0.34
RFC3P1-201ENST00000454568 BICRAQ9NZM4 1560 aa17.16■□□□□ 0.34
RFC3P1-201ENST00000454568 CD44P16070 742 aaKnown RBP17.14■□□□□ 0.33
RFC3P1-201ENST00000454568 CLCN6P51797 869 aa17.14■□□□□ 0.33
RFC3P1-201ENST00000454568 SCRIBQ14160 1630 aa17.07■□□□□ 0.32
RFC3P1-201ENST00000454568 SPDYE4A6NLX3 237 aa17.05■□□□□ 0.32
RFC3P1-201ENST00000454568 SHROOM4Q9ULL8 1493 aa16.94■□□□□ 0.3
RFC3P1-201ENST00000454568 CREBZFQ9NS37 354 aa16.94■□□□□ 0.3
RFC3P1-201ENST00000454568 LHX8Q68G74 356 aa16.93■□□□□ 0.3
RFC3P1-201ENST00000454568 ZNF579Q8NAF0 562 aaKnown RBP16.88■□□□□ 0.29
RFC3P1-201ENST00000454568 ZRANB1Q9UGI0 708 aa16.87■□□□□ 0.29
RFC3P1-201ENST00000454568 PAK3O75914 559 aaPredicted RBP16.83■□□□□ 0.28
RFC3P1-201ENST00000454568 DCBLD2Q96PD2 775 aa16.83■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 77.9 ms