RNA–Protein interactions for RNA: ENST00000454444.1

AC007879.2-201, humanhuman

TSL 4 BASIC

Gene AC007879.2, Length 551 nt, Biotype lincRNA, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
AC007879.2-201ENST00000454444 NISCHQ9Y2I1 1504 aa19.35■□□□□ 0.69
AC007879.2-201ENST00000454444 ABCC9O60706 1549 aa17.5■□□□□ 0.39
AC007879.2-201ENST00000454444 CCDC180Q9P1Z9 1646 aa17.3■□□□□ 0.36
AC007879.2-201ENST00000454444 DCAF8L2P0C7V8 631 aa16.62■□□□□ 0.25
AC007879.2-201ENST00000454444 RB1CC1Q8TDY2 1594 aa16.6■□□□□ 0.25
AC007879.2-201ENST00000454444 NACADO15069 1562 aa16.46■□□□□ 0.23
AC007879.2-201ENST00000454444 DNAJC5BQ9UF47 199 aa16.44■□□□□ 0.22
AC007879.2-201ENST00000454444 PABPN1Q86U42 306 aaKnown RBP eCLIP16.36■□□□□ 0.21
AC007879.2-201ENST00000454444 MYO15BQ96JP2 1530 aa16.18■□□□□ 0.18
AC007879.2-201ENST00000454444 UNC13AQ9UPW8 1703 aa16.02■□□□□ 0.16
AC007879.2-201ENST00000454444 BICRAQ9NZM4 1560 aa16■□□□□ 0.15
AC007879.2-201ENST00000454444 ZCCHC6Q5VYS8 1495 aaKnown RBP15.99■□□□□ 0.15
AC007879.2-201ENST00000454444 DCAF1Q9Y4B6 1507 aa15.94■□□□□ 0.14
AC007879.2-201ENST00000454444 SHROOM4Q9ULL8 1493 aa15.86■□□□□ 0.13
AC007879.2-201ENST00000454444 SCRIBQ14160 1630 aa15.83■□□□□ 0.13
AC007879.2-201ENST00000454444 CECR2Q9BXF3 1484 aa15.78■□□□□ 0.12
AC007879.2-201ENST00000454444 CC2D2AQ9P2K1 1620 aa15.73■□□□□ 0.11
AC007879.2-201ENST00000454444 EIF4G1Q04637 1599 aaKnown RBP15.69■□□□□ 0.1
AC007879.2-201ENST00000454444 NCAPD3P42695 1498 aa15.21■□□□□ 0.03
AC007879.2-201ENST00000454444 DNAJC5Q9H3Z4 198 aa15.21■□□□□ 0.03
AC007879.2-201ENST00000454444 ERCC6Q03468 1493 aa15.18■□□□□ 0.02
AC007879.2-201ENST00000454444 ATAD2BQ9ULI0 1458 aa15.15■□□□□ 0.02
AC007879.2-201ENST00000454444 SMARCA2P51531 1590 aa15.11■□□□□ 0.01
AC007879.2-201ENST00000454444 CUX2O14529 1486 aa15.09■□□□□ 0.01
AC007879.2-201ENST00000454444 SMARCA4P51532 1647 aa15.06■□□□□ 0
AC007879.2-201ENST00000454444 BAZ1AQ9NRL2 1556 aaPredicted RBP15.04■□□□□ -0
AC007879.2-201ENST00000454444 HMGXB3Q12766 1538 aa15.04■□□□□ -0
AC007879.2-201ENST00000454444 BAZ1BQ9UIG0 1483 aaKnown RBP15.04■□□□□ -0
AC007879.2-201ENST00000454444 NESP48681 1621 aa14.96□□□□□ -0.01
AC007879.2-201ENST00000454444 PEG3Q9GZU2 1588 aa14.9□□□□□ -0.02
AC007879.2-201ENST00000454444 MROH2BQ7Z745 1585 aa14.89□□□□□ -0.03
AC007879.2-201ENST00000454444 PDS5BQ9NTI5 1447 aa14.87□□□□□ -0.03
AC007879.2-201ENST00000454444 LAMC3Q9Y6N6 1575 aa14.85□□□□□ -0.03
AC007879.2-201ENST00000454444 CADPSQ9ULU8 1353 aa14.8□□□□□ -0.04
AC007879.2-201ENST00000454444 THOC2Q8NI27 1593 aaKnown RBP14.74□□□□□ -0.05
AC007879.2-201ENST00000454444 KIF21AQ7Z4S6 1674 aa14.69□□□□□ -0.06
AC007879.2-201ENST00000454444 MRC2Q9UBG0 1479 aa14.69□□□□□ -0.06
AC007879.2-201ENST00000454444 WIZO95785 1651 aa14.68□□□□□ -0.06
AC007879.2-201ENST00000454444 CEP164Q9UPV0 1460 aa14.63□□□□□ -0.07
AC007879.2-201ENST00000454444 TRIM41Q8WV44 630 aa14.61□□□□□ -0.07
AC007879.2-201ENST00000454444 RSF1Q96T23 1441 aaPredicted RBP14.6□□□□□ -0.07
AC007879.2-201ENST00000454444 FANCD2Q9BXW9 1451 aa14.6□□□□□ -0.07
AC007879.2-201ENST00000454444 WDR62O43379 1518 aa14.59□□□□□ -0.07
AC007879.2-201ENST00000454444 CFTRP13569 1480 aa14.57□□□□□ -0.08
AC007879.2-201ENST00000454444 OSCARQ8IYS5 282 aa14.53□□□□□ -0.08
AC007879.2-201ENST00000454444 TOP2AP11388 1531 aaKnown RBP14.52□□□□□ -0.08
AC007879.2-201ENST00000454444 URB2Q14146 1524 aaKnown RBP14.42□□□□□ -0.1
AC007879.2-201ENST00000454444 CCDC88BA6NC98 1476 aa14.39□□□□□ -0.11
AC007879.2-201ENST00000454444 IFT140Q96RY7 1462 aa14.34□□□□□ -0.11
AC007879.2-201ENST00000454444 ABCC8Q09428 1581 aa14.31□□□□□ -0.12
AC007879.2-201ENST00000454444 TOPBP1Q92547 1522 aa14.29□□□□□ -0.12
AC007879.2-201ENST00000454444 ZNF608Q9ULD9 1512 aaPredicted RBP14.28□□□□□ -0.12
AC007879.2-201ENST00000454444 FBLN2P98095 1184 aa14.26□□□□□ -0.13
AC007879.2-201ENST00000454444 PRDM2Q13029 1718 aa14.26□□□□□ -0.13
AC007879.2-201ENST00000454444 DNMBPQ6XZF7 1577 aa14.21□□□□□ -0.14
AC007879.2-201ENST00000454444 AQRO60306 1485 aaKnown RBP eCLIP14.19□□□□□ -0.14
AC007879.2-201ENST00000454444 CYB5RLQ6IPT4 315 aa14.19□□□□□ -0.14
AC007879.2-201ENST00000454444 SOGA1O94964 1423 aa14.15□□□□□ -0.14
AC007879.2-201ENST00000454444 EIF4G3O43432 1585 aaKnown RBP14.15□□□□□ -0.14
AC007879.2-201ENST00000454444 RIMBP3CA6NJZ7 1639 aa14.15□□□□□ -0.14
AC007879.2-201ENST00000454444 RIMBP3BA6NNM3 1639 aa14.15□□□□□ -0.14
AC007879.2-201ENST00000454444 RIMBP3Q9UFD9 1639 aa14.15□□□□□ -0.14
AC007879.2-201ENST00000454444 ARHGEF11O15085 1522 aa14.14□□□□□ -0.15
AC007879.2-201ENST00000454444 POLA1P09884 1462 aaPredicted RBP14.13□□□□□ -0.15
AC007879.2-201ENST00000454444 TDRD9Q8NDG6 1382 aaKnown RBP14.13□□□□□ -0.15
AC007879.2-201ENST00000454444 CHMP7Q8WUX9 453 aaPredicted RBP14.12□□□□□ -0.15
AC007879.2-201ENST00000454444 TRHP20396 242 aaPredicted RBP14.11□□□□□ -0.15
AC007879.2-201ENST00000454444 RAD54L2Q9Y4B4 1467 aa14.11□□□□□ -0.15
AC007879.2-201ENST00000454444 TARBP1Q13395 1621 aaKnown RBP14.09□□□□□ -0.15
AC007879.2-201ENST00000454444 SUPT5HO00267 1087 aaKnown RBP14.09□□□□□ -0.15
AC007879.2-201ENST00000454444 FGD5Q6ZNL6 1462 aa14.06□□□□□ -0.16
AC007879.2-201ENST00000454444 CHD1O14646 1710 aa14.02□□□□□ -0.16
AC007879.2-201ENST00000454444 SNAPC4Q5SXM2 1469 aa14.02□□□□□ -0.16
AC007879.2-201ENST00000454444 GRIN2BQ13224 1484 aa14□□□□□ -0.17
AC007879.2-201ENST00000454444 CUX1P39880 1505 aa14□□□□□ -0.17
AC007879.2-201ENST00000454444 ARAP1Q96P48 1450 aa13.99□□□□□ -0.17
AC007879.2-201ENST00000454444 MAGI1Q96QZ7 1491 aaPredicted RBP13.99□□□□□ -0.17
AC007879.2-201ENST00000454444 WDR97A6NE52 1622 aa13.98□□□□□ -0.17
AC007879.2-201ENST00000454444 SYNJ1O43426 1573 aa13.96□□□□□ -0.18
AC007879.2-201ENST00000454444 SYNJ2O15056 1496 aa13.95□□□□□ -0.18
AC007879.2-201ENST00000454444 GAPVD1Q14C86 1478 aa13.95□□□□□ -0.18
AC007879.2-201ENST00000454444 WRNQ14191 1432 aaPredicted RBP eCLIP13.9□□□□□ -0.19
AC007879.2-201ENST00000454444 CLASP1Q7Z460 1538 aa13.88□□□□□ -0.19
AC007879.2-201ENST00000454444 ABCA10Q8WWZ4 1543 aa13.88□□□□□ -0.19
AC007879.2-201ENST00000454444 PBRM1Q86U86 1689 aa13.81□□□□□ -0.2
AC007879.2-201ENST00000454444 GRIN2AQ12879 1464 aa13.8□□□□□ -0.2
AC007879.2-201ENST00000454444 ABCA5Q8WWZ7 1642 aa13.79□□□□□ -0.2
AC007879.2-201ENST00000454444 AEBP2Q6ZN18 517 aaPredicted RBP13.78□□□□□ -0.2
AC007879.2-201ENST00000454444 FHAD1B1AJZ9 1412 aa13.78□□□□□ -0.2
AC007879.2-201ENST00000454444 TOP2BQ02880 1626 aa13.75□□□□□ -0.21
AC007879.2-201ENST00000454444 NUP160Q12769 1436 aa13.73□□□□□ -0.21
AC007879.2-201ENST00000454444 ADAMTS12P58397 1594 aa13.71□□□□□ -0.21
AC007879.2-201ENST00000454444 ERICH3Q5RHP9 1530 aa13.71□□□□□ -0.21
AC007879.2-201ENST00000454444 JPH4Q96JJ6 628 aa13.71□□□□□ -0.21
AC007879.2-201ENST00000454444 NPM1P06748 294 aaKnown RBP eCLIP13.7□□□□□ -0.22
AC007879.2-201ENST00000454444 BIVM-ERCC5R4GMW8 1640 aa13.7□□□□□ -0.22
AC007879.2-201ENST00000454444 CEP170Q5SW79 1584 aa13.69□□□□□ -0.22
AC007879.2-201ENST00000454444 PRG4Q92954 1404 aaPredicted RBP13.68□□□□□ -0.22
AC007879.2-201ENST00000454444 ERCC6L2Q5T890 1561 aa13.66□□□□□ -0.22
AC007879.2-201ENST00000454444 KIF27Q86VH2 1401 aa13.6□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms