RNA–Protein interactions for RNA: ENST00000452441.5

DDR1-239, Transcript of discoidin domain receptor tyrosine kinase 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene DDR1, Length 3,857 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDR1-239ENST00000452441 NISCHQ9Y2I1 1504 aa22.1■■□□□ 1.13
DDR1-239ENST00000452441 DCAF8L2P0C7V8 631 aa20.24■□□□□ 0.83
DDR1-239ENST00000452441 SHROOM4Q9ULL8 1493 aa19.73■□□□□ 0.75
DDR1-239ENST00000452441 SUPT5HO00267 1087 aaKnown RBP19.59■□□□□ 0.73
DDR1-239ENST00000452441 EHMT2Q96KQ7 1210 aa18.82■□□□□ 0.6
DDR1-239ENST00000452441 ZCCHC6Q5VYS8 1495 aaKnown RBP18.68■□□□□ 0.58
DDR1-239ENST00000452441 CCDC180Q9P1Z9 1646 aa18.61■□□□□ 0.57
DDR1-239ENST00000452441 PCGF6Q9BYE7 350 aa18.47■□□□□ 0.55
DDR1-239ENST00000452441 FAM9AQ8IZU1 332 aaPredicted RBP18.39■□□□□ 0.53
DDR1-239ENST00000452441 LOC105371045A0A1W2PR82 267 aa18.23■□□□□ 0.51
DDR1-239ENST00000452441 MYO15BQ96JP2 1530 aa18.21■□□□□ 0.51
DDR1-239ENST00000452441 CHIC1Q5VXU3 224 aa18.19■□□□□ 0.5
DDR1-239ENST00000452441 TTBK1Q5TCY1 1321 aaPredicted RBP18.1■□□□□ 0.49
DDR1-239ENST00000452441 PPARGC1BQ86YN6 1023 aaKnown RBP18.05■□□□□ 0.48
DDR1-239ENST00000452441 HRCP23327 699 aa18.04■□□□□ 0.48
DDR1-239ENST00000452441 ABCC9O60706 1549 aa18.02■□□□□ 0.48
DDR1-239ENST00000452441 DCAF1Q9Y4B6 1507 aa17.96■□□□□ 0.47
DDR1-239ENST00000452441 TRIM41Q8WV44 630 aa17.88■□□□□ 0.45
DDR1-239ENST00000452441 RANGAP1P46060 587 aaPredicted RBP17.79■□□□□ 0.44
DDR1-239ENST00000452441 SCRIBQ14160 1630 aa17.71■□□□□ 0.43
DDR1-239ENST00000452441 PABPN1Q86U42 306 aaKnown RBP eCLIP17.67■□□□□ 0.42
DDR1-239ENST00000452441 RSF1Q96T23 1441 aaPredicted RBP17.57■□□□□ 0.4
DDR1-239ENST00000452441 TRIM26Q12899 539 aaPredicted RBP17.49■□□□□ 0.39
DDR1-239ENST00000452441 RB1CC1Q8TDY2 1594 aa17.44■□□□□ 0.38
DDR1-239ENST00000452441 CECR2Q9BXF3 1484 aa17.4■□□□□ 0.38
DDR1-239ENST00000452441 CCER1Q8TC90 406 aaPredicted RBP17.37■□□□□ 0.37
DDR1-239ENST00000452441 UBTFP17480 764 aaKnown RBP17.36■□□□□ 0.37
DDR1-239ENST00000452441 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.33■□□□□ 0.36
DDR1-239ENST00000452441 MROH2BQ7Z745 1585 aa17.28■□□□□ 0.36
DDR1-239ENST00000452441 NACADO15069 1562 aa17.23■□□□□ 0.35
DDR1-239ENST00000452441 WIZO95785 1651 aa17.19■□□□□ 0.34
DDR1-239ENST00000452441 ZEB1P37275 1124 aaPredicted RBP17.17■□□□□ 0.34
DDR1-239ENST00000452441 YTHDC1Q96MU7 727 aaKnown RBP17.14■□□□□ 0.33
DDR1-239ENST00000452441 ATP1B4Q9UN42 357 aaPredicted RBP17.12■□□□□ 0.33
DDR1-239ENST00000452441 APLP2Q06481 763 aa17.11■□□□□ 0.33
DDR1-239ENST00000452441 HNRNPUL2Q1KMD3 747 aaKnown RBP17.07■□□□□ 0.32
DDR1-239ENST00000452441 BAZ1AQ9NRL2 1556 aaPredicted RBP16.96■□□□□ 0.3
DDR1-239ENST00000452441 ITGAEP38570 1179 aa16.93■□□□□ 0.3
DDR1-239ENST00000452441 EIF4G1Q04637 1599 aaKnown RBP16.9■□□□□ 0.3
DDR1-239ENST00000452441 ABCC8Q09428 1581 aa16.88■□□□□ 0.29
DDR1-239ENST00000452441 UNC13AQ9UPW8 1703 aa16.83■□□□□ 0.29
DDR1-239ENST00000452441 CCDC88BA6NC98 1476 aa16.83■□□□□ 0.28
DDR1-239ENST00000452441 SCAF1Q9H7N4 1312 aaKnown RBP16.83■□□□□ 0.28
DDR1-239ENST00000452441 SMARCA4P51532 1647 aa16.82■□□□□ 0.28
DDR1-239ENST00000452441 TOP2AP11388 1531 aaKnown RBP16.79■□□□□ 0.28
DDR1-239ENST00000452441 CSRNP3Q8WYN3 585 aa16.78■□□□□ 0.28
DDR1-239ENST00000452441 SMARCA2P51531 1590 aa16.76■□□□□ 0.27
DDR1-239ENST00000452441 DIEXFQ68CQ4 756 aaKnown RBP16.76■□□□□ 0.27
DDR1-239ENST00000452441 SOGA1O94964 1423 aa16.73■□□□□ 0.27
DDR1-239ENST00000452441 RUSC2Q8N2Y8 1516 aa16.7■□□□□ 0.26
DDR1-239ENST00000452441 CENPBP07199 599 aaPredicted RBP16.67■□□□□ 0.26
DDR1-239ENST00000452441 PELP1Q8IZL8 1130 aaKnown RBP16.66■□□□□ 0.26
DDR1-239ENST00000452441 BICRAQ9NZM4 1560 aa16.64■□□□□ 0.25
DDR1-239ENST00000452441 P3H3Q8IVL6 736 aa16.62■□□□□ 0.25
DDR1-239ENST00000452441 GTF3C3Q9Y5Q9 886 aa16.61■□□□□ 0.25
DDR1-239ENST00000452441 CEP162Q5TB80 1403 aa16.59■□□□□ 0.25
DDR1-239ENST00000452441 NEUROD1Q13562 356 aa16.58■□□□□ 0.25
DDR1-239ENST00000452441 ACIN1Q9UKV3 1341 aaKnown RBP16.57■□□□□ 0.24
DDR1-239ENST00000452441 ARID3CA6NKF2 412 aa16.53■□□□□ 0.24
DDR1-239ENST00000452441 TNIKQ9UKE5 1360 aa16.48■□□□□ 0.23
DDR1-239ENST00000452441 WRNQ14191 1432 aaPredicted RBP eCLIP16.47■□□□□ 0.23
DDR1-239ENST00000452441 SYNJ1O43426 1573 aa16.45■□□□□ 0.22
DDR1-239ENST00000452441 BAZ1BQ9UIG0 1483 aaKnown RBP16.44■□□□□ 0.22
DDR1-239ENST00000452441 CNGB1Q14028 1251 aaPredicted RBP16.43■□□□□ 0.22
DDR1-239ENST00000452441 ATAD2BQ9ULI0 1458 aa16.41■□□□□ 0.22
DDR1-239ENST00000452441 PEG3Q9GZU2 1588 aa16.39■□□□□ 0.21
DDR1-239ENST00000452441 ZNF316A6NFI3 1004 aaPredicted RBP16.39■□□□□ 0.21
DDR1-239ENST00000452441 FAM50AQ14320 339 aaKnown RBP16.38■□□□□ 0.21
DDR1-239ENST00000452441 GOLGA3Q08378 1498 aa16.38■□□□□ 0.21
DDR1-239ENST00000452441 EEA1Q15075 1411 aa16.37■□□□□ 0.21
DDR1-239ENST00000452441 MIER1Q8N108 512 aa16.33■□□□□ 0.2
DDR1-239ENST00000452441 FBLN2P98095 1184 aa16.32■□□□□ 0.2
DDR1-239ENST00000452441 CLIP1P30622 1438 aa16.29■□□□□ 0.2
DDR1-239ENST00000452441 HIRIP3Q9BW71 556 aaPredicted RBP16.28■□□□□ 0.2
DDR1-239ENST00000452441 RAPGEF2Q9Y4G8 1499 aa16.28■□□□□ 0.2
DDR1-239ENST00000452441 BCANQ96GW7 911 aa16.28■□□□□ 0.2
DDR1-239ENST00000452441 CEP164Q9UPV0 1460 aa16.26■□□□□ 0.19
DDR1-239ENST00000452441 KIF21BO75037 1637 aa16.22■□□□□ 0.19
DDR1-239ENST00000452441 POLR3GLQ9BT43 218 aa16.15■□□□□ 0.18
DDR1-239ENST00000452441 VPS8Q8N3P4 1428 aa16.15■□□□□ 0.18
DDR1-239ENST00000452441 TOP2BQ02880 1626 aa16.13■□□□□ 0.17
DDR1-239ENST00000452441 KANK4Q5T7N3 995 aaPredicted RBP16.1■□□□□ 0.17
DDR1-239ENST00000452441 CUX1P39880 1505 aa16.06■□□□□ 0.16
DDR1-239ENST00000452441 DDX10Q13206 875 aaKnown RBP16.05■□□□□ 0.16
DDR1-239ENST00000452441 BIVM-ERCC5R4GMW8 1640 aa16.04■□□□□ 0.16
DDR1-239ENST00000452441 TRIM52Q96A61 297 aa16.04■□□□□ 0.16
DDR1-239ENST00000452441 KIF27Q86VH2 1401 aa16.03■□□□□ 0.16
DDR1-239ENST00000452441 PRXQ9BXM0 1461 aa16.02■□□□□ 0.15
DDR1-239ENST00000452441 ARAP1Q96P48 1450 aa16.02■□□□□ 0.15
DDR1-239ENST00000452441 NCAPD3P42695 1498 aa16.01■□□□□ 0.15
DDR1-239ENST00000452441 CUX2O14529 1486 aa16■□□□□ 0.15
DDR1-239ENST00000452441 CHIC2Q9UKJ5 165 aa15.99■□□□□ 0.15
DDR1-239ENST00000452441 SIN3AQ96ST3 1273 aa15.99■□□□□ 0.15
DDR1-239ENST00000452441 SENP3-EIF4A1A0A087X0R7 540 aa15.98■□□□□ 0.15
DDR1-239ENST00000452441 MYT1LQ9UL68 1186 aa15.98■□□□□ 0.15
DDR1-239ENST00000452441 HMGXB3Q12766 1538 aa15.96■□□□□ 0.15
DDR1-239ENST00000452441 ZNF777Q9ULD5 760 aaPredicted RBP15.95■□□□□ 0.14
DDR1-239ENST00000452441 ZNF326Q5BKZ1 582 aaKnown RBP15.94■□□□□ 0.14
DDR1-239ENST00000452441 CFTRP13569 1480 aa15.93■□□□□ 0.14
DDR1-239ENST00000452441 ERICH3Q5RHP9 1530 aa15.93■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 65.7 ms