RNA–Protein interactions for RNA: ENST00000452128.6

SCAMP4-205, Transcript of secretory carrier membrane protein 4, humanhuman

TSL 2

Gene SCAMP4, Length 718 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAMP4-205ENST00000452128 NISCHQ9Y2I1 1504 aa39.59■■■■□ 3.93
SCAMP4-205ENST00000452128 CCDC180Q9P1Z9 1646 aa35.11■■■■□ 3.21
SCAMP4-205ENST00000452128 ABCC9O60706 1549 aa34.55■■■■□ 3.12
SCAMP4-205ENST00000452128 NACADO15069 1562 aa33.13■■■□□ 2.89
SCAMP4-205ENST00000452128 RB1CC1Q8TDY2 1594 aa33.13■■■□□ 2.89
SCAMP4-205ENST00000452128 DCAF8L2P0C7V8 631 aa33.01■■■□□ 2.87
SCAMP4-205ENST00000452128 MYO15BQ96JP2 1530 aa32.98■■■□□ 2.87
SCAMP4-205ENST00000452128 ZCCHC6Q5VYS8 1495 aaKnown RBP32.94■■■□□ 2.86
SCAMP4-205ENST00000452128 DCAF1Q9Y4B6 1507 aa32.78■■■□□ 2.84
SCAMP4-205ENST00000452128 PABPN1Q86U42 306 aaKnown RBP eCLIP32.34■■■□□ 2.77
SCAMP4-205ENST00000452128 UNC13AQ9UPW8 1703 aa32.33■■■□□ 2.77
SCAMP4-205ENST00000452128 BICRAQ9NZM4 1560 aa32.27■■■□□ 2.76
SCAMP4-205ENST00000452128 DNAJC5BQ9UF47 199 aa32.06■■■□□ 2.72
SCAMP4-205ENST00000452128 SCRIBQ14160 1630 aa32■■■□□ 2.71
SCAMP4-205ENST00000452128 SHROOM4Q9ULL8 1493 aa31.85■■■□□ 2.69
SCAMP4-205ENST00000452128 EIF4G1Q04637 1599 aaKnown RBP31.34■■■□□ 2.61
SCAMP4-205ENST00000452128 CC2D2AQ9P2K1 1620 aa31.23■■■□□ 2.59
SCAMP4-205ENST00000452128 CECR2Q9BXF3 1484 aa31.08■■■□□ 2.57
SCAMP4-205ENST00000452128 NCAPD3P42695 1498 aa30.68■■■□□ 2.5
SCAMP4-205ENST00000452128 SMARCA4P51532 1647 aa30.66■■■□□ 2.5
SCAMP4-205ENST00000452128 ATAD2BQ9ULI0 1458 aa30.63■■■□□ 2.49
SCAMP4-205ENST00000452128 BAZ1AQ9NRL2 1556 aaPredicted RBP30.61■■■□□ 2.49
SCAMP4-205ENST00000452128 MROH2BQ7Z745 1585 aa30.52■■■□□ 2.48
SCAMP4-205ENST00000452128 SMARCA2P51531 1590 aa30.49■■■□□ 2.47
SCAMP4-205ENST00000452128 PEG3Q9GZU2 1588 aa30.45■■■□□ 2.47
SCAMP4-205ENST00000452128 HMGXB3Q12766 1538 aa30.4■■■□□ 2.46
SCAMP4-205ENST00000452128 BAZ1BQ9UIG0 1483 aaKnown RBP30.26■■■□□ 2.44
SCAMP4-205ENST00000452128 RSF1Q96T23 1441 aaPredicted RBP30.17■■■□□ 2.42
SCAMP4-205ENST00000452128 WIZO95785 1651 aa30.08■■■□□ 2.41
SCAMP4-205ENST00000452128 NESP48681 1621 aa29.9■■■□□ 2.38
SCAMP4-205ENST00000452128 TOP2AP11388 1531 aaKnown RBP29.78■■■□□ 2.36
SCAMP4-205ENST00000452128 CADPSQ9ULU8 1353 aa29.75■■■□□ 2.35
SCAMP4-205ENST00000452128 LAMC3Q9Y6N6 1575 aa29.73■■■□□ 2.35
SCAMP4-205ENST00000452128 ERCC6Q03468 1493 aa29.69■■■□□ 2.34
SCAMP4-205ENST00000452128 PDS5BQ9NTI5 1447 aa29.58■■■□□ 2.33
SCAMP4-205ENST00000452128 CFTRP13569 1480 aa29.55■■■□□ 2.32
SCAMP4-205ENST00000452128 CUX2O14529 1486 aa29.53■■■□□ 2.32
SCAMP4-205ENST00000452128 CCDC88BA6NC98 1476 aa29.51■■■□□ 2.31
SCAMP4-205ENST00000452128 THOC2Q8NI27 1593 aaKnown RBP29.42■■■□□ 2.3
SCAMP4-205ENST00000452128 KIF21AQ7Z4S6 1674 aa29.4■■■□□ 2.3
SCAMP4-205ENST00000452128 FANCD2Q9BXW9 1451 aa29.33■■■□□ 2.29
SCAMP4-205ENST00000452128 MRC2Q9UBG0 1479 aa29.27■■■□□ 2.28
SCAMP4-205ENST00000452128 CEP164Q9UPV0 1460 aa29.25■■■□□ 2.27
SCAMP4-205ENST00000452128 WDR62O43379 1518 aa29.2■■■□□ 2.26
SCAMP4-205ENST00000452128 SUPT5HO00267 1087 aaKnown RBP29.18■■■□□ 2.26
SCAMP4-205ENST00000452128 URB2Q14146 1524 aaKnown RBP29.1■■■□□ 2.25
SCAMP4-205ENST00000452128 PRDM2Q13029 1718 aa29.04■■■□□ 2.24
SCAMP4-205ENST00000452128 DNAJC5Q9H3Z4 198 aa28.91■■■□□ 2.22
SCAMP4-205ENST00000452128 TOPBP1Q92547 1522 aa28.86■■■□□ 2.21
SCAMP4-205ENST00000452128 ABCC8Q09428 1581 aa28.82■■■□□ 2.2
SCAMP4-205ENST00000452128 DNMBPQ6XZF7 1577 aa28.76■■■□□ 2.19
SCAMP4-205ENST00000452128 IFT140Q96RY7 1462 aa28.7■■■□□ 2.18
SCAMP4-205ENST00000452128 ZNF608Q9ULD9 1512 aaPredicted RBP28.63■■■□□ 2.17
SCAMP4-205ENST00000452128 POLA1P09884 1462 aaPredicted RBP28.62■■■□□ 2.17
SCAMP4-205ENST00000452128 CUX1P39880 1505 aa28.62■■■□□ 2.17
SCAMP4-205ENST00000452128 TARBP1Q13395 1621 aaKnown RBP28.56■■■□□ 2.16
SCAMP4-205ENST00000452128 RAD54L2Q9Y4B4 1467 aa28.51■■■□□ 2.15
SCAMP4-205ENST00000452128 SOGA1O94964 1423 aa28.51■■■□□ 2.15
SCAMP4-205ENST00000452128 FGD5Q6ZNL6 1462 aa28.49■■■□□ 2.15
SCAMP4-205ENST00000452128 AQRO60306 1485 aaKnown RBP eCLIP28.45■■■□□ 2.142e-7■■■■■ 46.8
SCAMP4-205ENST00000452128 TDRD9Q8NDG6 1382 aaKnown RBP28.37■■■□□ 2.13
SCAMP4-205ENST00000452128 EIF4G3O43432 1585 aaKnown RBP28.37■■■□□ 2.13
SCAMP4-205ENST00000452128 WRNQ14191 1432 aaPredicted RBP eCLIP28.35■■■□□ 2.13
SCAMP4-205ENST00000452128 OSCARQ8IYS5 282 aa28.34■■■□□ 2.13
SCAMP4-205ENST00000452128 TOP2BQ02880 1626 aa28.29■■■□□ 2.12
SCAMP4-205ENST00000452128 SYNJ1O43426 1573 aa28.28■■■□□ 2.12
SCAMP4-205ENST00000452128 ABCA10Q8WWZ4 1543 aa28.26■■■□□ 2.11
SCAMP4-205ENST00000452128 WDR97A6NE52 1622 aa28.25■■■□□ 2.11
SCAMP4-205ENST00000452128 BIVM-ERCC5R4GMW8 1640 aa28.25■■■□□ 2.11
SCAMP4-205ENST00000452128 GRIN2BQ13224 1484 aa28.16■■■□□ 2.1
SCAMP4-205ENST00000452128 GAPVD1Q14C86 1478 aa28.15■■■□□ 2.1
SCAMP4-205ENST00000452128 SNAPC4Q5SXM2 1469 aa28.11■■■□□ 2.09
SCAMP4-205ENST00000452128 ABCA5Q8WWZ7 1642 aa28.1■■■□□ 2.09
SCAMP4-205ENST00000452128 MAGI1Q96QZ7 1491 aaPredicted RBP28.08■■■□□ 2.09
SCAMP4-205ENST00000452128 FBLN2P98095 1184 aa28.02■■■□□ 2.08
SCAMP4-205ENST00000452128 CHD1O14646 1710 aa27.99■■■□□ 2.07
SCAMP4-205ENST00000452128 SYNJ2O15056 1496 aa27.99■■■□□ 2.07
SCAMP4-205ENST00000452128 CHMP7Q8WUX9 453 aaPredicted RBP27.98■■■□□ 2.07
SCAMP4-205ENST00000452128 PBRM1Q86U86 1689 aa27.94■■■□□ 2.06
SCAMP4-205ENST00000452128 ERICH3Q5RHP9 1530 aa27.87■■■□□ 2.05
SCAMP4-205ENST00000452128 CLASP1Q7Z460 1538 aa27.84■■■□□ 2.05
SCAMP4-205ENST00000452128 FHAD1B1AJZ9 1412 aa27.84■■■□□ 2.05
SCAMP4-205ENST00000452128 ARHGEF11O15085 1522 aa27.82■■■□□ 2.04
SCAMP4-205ENST00000452128 IGF1RP08069 1367 aa27.81■■■□□ 2.04
SCAMP4-205ENST00000452128 ADAMTS12P58397 1594 aa27.81■■■□□ 2.04
SCAMP4-205ENST00000452128 RIMBP3CA6NJZ7 1639 aa27.79■■■□□ 2.04
SCAMP4-205ENST00000452128 RIMBP3BA6NNM3 1639 aa27.79■■■□□ 2.04
SCAMP4-205ENST00000452128 RIMBP3Q9UFD9 1639 aa27.79■■■□□ 2.04
SCAMP4-205ENST00000452128 GRIN2AQ12879 1464 aa27.79■■■□□ 2.04
SCAMP4-205ENST00000452128 KIF27Q86VH2 1401 aa27.75■■■□□ 2.03
SCAMP4-205ENST00000452128 NUP160Q12769 1436 aa27.75■■■□□ 2.03
SCAMP4-205ENST00000452128 TRIM41Q8WV44 630 aa27.71■■■□□ 2.03
SCAMP4-205ENST00000452128 CEP170Q5SW79 1584 aa27.65■■■□□ 2.02
SCAMP4-205ENST00000452128 ARAP1Q96P48 1450 aa27.63■■■□□ 2.01
SCAMP4-205ENST00000452128 CYB5RLQ6IPT4 315 aa27.6■■■□□ 2.01
SCAMP4-205ENST00000452128 RUSC2Q8N2Y8 1516 aa27.56■■■□□ 2
SCAMP4-205ENST00000452128 CARMIL1Q5VZK9 1371 aa27.55■■■□□ 2
SCAMP4-205ENST00000452128 CUL7Q14999 1698 aa27.49■■□□□ 1.99
SCAMP4-205ENST00000452128 JPH4Q96JJ6 628 aa27.48■■□□□ 1.99
SCAMP4-205ENST00000452128 SHROOM2Q13796 1616 aa27.48■■□□□ 1.99
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms