RNA–Protein interactions for RNA: ENST00000450056.6

CHFR-205, Transcript of checkpoint with forkhead and ring finger domains, humanhuman

TSL 2 BASIC

Gene CHFR, Length 3,250 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHFR-205ENST00000450056 NISCHQ9Y2I1 1504 aa27.37■■□□□ 1.97
CHFR-205ENST00000450056 SHROOM4Q9ULL8 1493 aa23.83■■□□□ 1.41
CHFR-205ENST00000450056 SUPT5HO00267 1087 aaKnown RBP23.82■■□□□ 1.4
CHFR-205ENST00000450056 CCDC180Q9P1Z9 1646 aa23.74■■□□□ 1.39
CHFR-205ENST00000450056 HRCP23327 699 aa23.51■■□□□ 1.35
CHFR-205ENST00000450056 PCGF6Q9BYE7 350 aa23.5■■□□□ 1.35
CHFR-205ENST00000450056 PPARGC1BQ86YN6 1023 aaKnown RBP23.43■■□□□ 1.34
CHFR-205ENST00000450056 ZCCHC6Q5VYS8 1495 aaKnown RBP23.07■■□□□ 1.28
CHFR-205ENST00000450056 CHIC1Q5VXU3 224 aa22.89■■□□□ 1.26
CHFR-205ENST00000450056 DCAF8L2P0C7V8 631 aa22.88■■□□□ 1.25
CHFR-205ENST00000450056 MYO15BQ96JP2 1530 aa22.81■■□□□ 1.24
CHFR-205ENST00000450056 LOC105371045A0A1W2PR82 267 aa22.71■■□□□ 1.23
CHFR-205ENST00000450056 DCAF1Q9Y4B6 1507 aa22.64■■□□□ 1.21
CHFR-205ENST00000450056 PELP1Q8IZL8 1130 aaKnown RBP22.5■■□□□ 1.19
CHFR-205ENST00000450056 EHMT2Q96KQ7 1210 aa22.44■■□□□ 1.18
CHFR-205ENST00000450056 TRIM26Q12899 539 aaPredicted RBP22.38■■□□□ 1.17
CHFR-205ENST00000450056 SCAF1Q9H7N4 1312 aaKnown RBP22.32■■□□□ 1.16
CHFR-205ENST00000450056 FAM9AQ8IZU1 332 aaPredicted RBP22.2■■□□□ 1.14
CHFR-205ENST00000450056 ABCC9O60706 1549 aa22.15■■□□□ 1.14
CHFR-205ENST00000450056 ZEB1P37275 1124 aaPredicted RBP22.1■■□□□ 1.13
CHFR-205ENST00000450056 NACADO15069 1562 aa22■■□□□ 1.11
CHFR-205ENST00000450056 SCRIBQ14160 1630 aa21.86■■□□□ 1.09
CHFR-205ENST00000450056 TTBK1Q5TCY1 1321 aaPredicted RBP21.82■■□□□ 1.08
CHFR-205ENST00000450056 NEUROD1Q13562 356 aa21.82■■□□□ 1.08
CHFR-205ENST00000450056 GTF3C3Q9Y5Q9 886 aa21.81■■□□□ 1.08
CHFR-205ENST00000450056 TRIM41Q8WV44 630 aa21.81■■□□□ 1.08
CHFR-205ENST00000450056 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.79■■□□□ 1.08
CHFR-205ENST00000450056 CCER1Q8TC90 406 aaPredicted RBP21.77■■□□□ 1.08
CHFR-205ENST00000450056 ACIN1Q9UKV3 1341 aaKnown RBP21.77■■□□□ 1.08
CHFR-205ENST00000450056 RB1CC1Q8TDY2 1594 aa21.74■■□□□ 1.07
CHFR-205ENST00000450056 CENPBP07199 599 aaPredicted RBP21.68■■□□□ 1.06
CHFR-205ENST00000450056 YTHDC1Q96MU7 727 aaKnown RBP21.67■■□□□ 1.06
CHFR-205ENST00000450056 DIEXFQ68CQ4 756 aaKnown RBP21.59■■□□□ 1.05
CHFR-205ENST00000450056 MYT1Q01538 1121 aa21.53■■□□□ 1.04
CHFR-205ENST00000450056 UNC13AQ9UPW8 1703 aa21.45■■□□□ 1.02
CHFR-205ENST00000450056 RSF1Q96T23 1441 aaPredicted RBP21.34■■□□□ 1.01
CHFR-205ENST00000450056 CECR2Q9BXF3 1484 aa21.27■■□□□ 1
CHFR-205ENST00000450056 BICRAQ9NZM4 1560 aa21.19■□□□□ 0.98
CHFR-205ENST00000450056 MROH2BQ7Z745 1585 aa21.18■□□□□ 0.98
CHFR-205ENST00000450056 BAZ1AQ9NRL2 1556 aaPredicted RBP21.07■□□□□ 0.96
CHFR-205ENST00000450056 ZNF316A6NFI3 1004 aaPredicted RBP21.05■□□□□ 0.96
CHFR-205ENST00000450056 WIZO95785 1651 aa21.03■□□□□ 0.96
CHFR-205ENST00000450056 MIER1Q8N108 512 aa21.02■□□□□ 0.96
CHFR-205ENST00000450056 SMARCA4P51532 1647 aa20.99■□□□□ 0.95
CHFR-205ENST00000450056 HNRNPUL2Q1KMD3 747 aaKnown RBP20.98■□□□□ 0.95
CHFR-205ENST00000450056 PABPN1Q86U42 306 aaKnown RBP eCLIP20.93■□□□□ 0.94
CHFR-205ENST00000450056 UBTFP17480 764 aaKnown RBP20.88■□□□□ 0.93
CHFR-205ENST00000450056 RANGAP1P46060 587 aaPredicted RBP20.84■□□□□ 0.93
CHFR-205ENST00000450056 TOP2AP11388 1531 aaKnown RBP20.79■□□□□ 0.92
CHFR-205ENST00000450056 PEG3Q9GZU2 1588 aa20.75■□□□□ 0.91
CHFR-205ENST00000450056 BCANQ96GW7 911 aa20.68■□□□□ 0.9
CHFR-205ENST00000450056 EIF4G1Q04637 1599 aaKnown RBP20.66■□□□□ 0.9
CHFR-205ENST00000450056 SMARCA2P51531 1590 aa20.63■□□□□ 0.89
CHFR-205ENST00000450056 CCDC88BA6NC98 1476 aa20.58■□□□□ 0.89
CHFR-205ENST00000450056 APLP2Q06481 763 aa20.58■□□□□ 0.88
CHFR-205ENST00000450056 SUPT16HQ9Y5B9 1047 aaKnown RBP20.58■□□□□ 0.88
CHFR-205ENST00000450056 ATAD2BQ9ULI0 1458 aa20.55■□□□□ 0.88
CHFR-205ENST00000450056 CEP162Q5TB80 1403 aa20.51■□□□□ 0.87
CHFR-205ENST00000450056 BCL11AQ9H165 835 aa20.49■□□□□ 0.87
CHFR-205ENST00000450056 ANP32EQ9BTT0 268 aa20.47■□□□□ 0.87
CHFR-205ENST00000450056 TSHZ2Q9NRE2 1034 aa20.45■□□□□ 0.86
CHFR-205ENST00000450056 BAZ1BQ9UIG0 1483 aaKnown RBP20.41■□□□□ 0.86
CHFR-205ENST00000450056 CSRNP3Q8WYN3 585 aa20.4■□□□□ 0.86
CHFR-205ENST00000450056 ITGAEP38570 1179 aa20.35■□□□□ 0.85
CHFR-205ENST00000450056 SOGA1O94964 1423 aa20.33■□□□□ 0.85
CHFR-205ENST00000450056 HMGXB3Q12766 1538 aa20.33■□□□□ 0.85
CHFR-205ENST00000450056 NCAPD3P42695 1498 aa20.32■□□□□ 0.84
CHFR-205ENST00000450056 FKBP8Q14318 412 aa20.31■□□□□ 0.84
CHFR-205ENST00000450056 KCNH8Q96L42 1107 aa20.29■□□□□ 0.84
CHFR-205ENST00000450056 ABCC8Q09428 1581 aa20.28■□□□□ 0.84
CHFR-205ENST00000450056 WRNQ14191 1432 aaPredicted RBP eCLIP20.23■□□□□ 0.831e-6■■■■■ 52.5
CHFR-205ENST00000450056 TNIKQ9UKE5 1360 aa20.22■□□□□ 0.83
CHFR-205ENST00000450056 NEFLP07196 543 aa20.21■□□□□ 0.83
CHFR-205ENST00000450056 RUSC2Q8N2Y8 1516 aa20.18■□□□□ 0.82
CHFR-205ENST00000450056 CLSPNQ9HAW4 1339 aa20.15■□□□□ 0.82
CHFR-205ENST00000450056 ERICH6Q7L0X2 663 aa20.14■□□□□ 0.81
CHFR-205ENST00000450056 TRIM52Q96A61 297 aa20.11■□□□□ 0.81
CHFR-205ENST00000450056 DDX10Q13206 875 aaKnown RBP20.1■□□□□ 0.81
CHFR-205ENST00000450056 CC2D2AQ9P2K1 1620 aa20.1■□□□□ 0.81
CHFR-205ENST00000450056 HIRIP3Q9BW71 556 aaPredicted RBP20.08■□□□□ 0.81
CHFR-205ENST00000450056 RBM19Q9Y4C8 960 aaKnown RBP20.06■□□□□ 0.8
CHFR-205ENST00000450056 CLIP1P30622 1438 aa20.03■□□□□ 0.8
CHFR-205ENST00000450056 SYNJ1O43426 1573 aa20.02■□□□□ 0.8
CHFR-205ENST00000450056 GOLGA3Q08378 1498 aa20■□□□□ 0.79
CHFR-205ENST00000450056 IRX6P78412 446 aaPredicted RBP19.98■□□□□ 0.79
CHFR-205ENST00000450056 CFTRP13569 1480 aa19.96■□□□□ 0.79
CHFR-205ENST00000450056 PRDM2Q13029 1718 aa19.92■□□□□ 0.78
CHFR-205ENST00000450056 DHX57Q6P158 1386 aaKnown RBP19.91■□□□□ 0.78
CHFR-205ENST00000450056 TOP2BQ02880 1626 aa19.89■□□□□ 0.77
CHFR-205ENST00000450056 BIVM-ERCC5R4GMW8 1640 aa19.89■□□□□ 0.77
CHFR-205ENST00000450056 KANK4Q5T7N3 995 aaPredicted RBP19.87■□□□□ 0.77
CHFR-205ENST00000450056 EEA1Q15075 1411 aa19.85■□□□□ 0.77
CHFR-205ENST00000450056 ATP1B4Q9UN42 357 aaPredicted RBP19.84■□□□□ 0.77
CHFR-205ENST00000450056 VPS8Q8N3P4 1428 aa19.82■□□□□ 0.76
CHFR-205ENST00000450056 SIN3AQ96ST3 1273 aa19.81■□□□□ 0.76
CHFR-205ENST00000450056 ANP32CO43423 234 aa19.8■□□□□ 0.76
CHFR-205ENST00000450056 CADPSQ9ULU8 1353 aa19.79■□□□□ 0.76
CHFR-205ENST00000450056 CUX1P39880 1505 aa19.78■□□□□ 0.76
CHFR-205ENST00000450056 CDK11AQ9UQ88 783 aaPredicted RBP19.78■□□□□ 0.76
CHFR-205ENST00000450056 MSH5O43196 834 aa19.77■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 84 ms