RNA–Protein interactions for RNA: ENST00000448828.5

NME4-206, Transcript of NME/NM23 nucleoside diphosphate kinase 4, humanhuman

TSL 2

Gene NME4, Length 1,167 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NME4-206ENST00000448828 PCBP1Q15365 356 aaKnown RBP eCLIP25.19■■□□□ 1.622e-46■■■■□ 22.3
NME4-206ENST00000448828 LIN28BQ6ZN17 250 aaKnown RBP eCLIP25.81■■□□□ 1.724e-32■■■■■ 238.3
NME4-206ENST00000448828 SAFB2Q14151 953 aaKnown RBP eCLIP33.13■■■□□ 2.894e-27■■■■■ 42.2
NME4-206ENST00000448828 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP24.69■■□□□ 1.543e-18■■■■■ 191.3
NME4-206ENST00000448828 GTF2F1P35269 517 aaKnown RBP eCLIP25.34■■□□□ 1.654e-18■■■■■ 190.7
NME4-206ENST00000448828 HNRNPKP61978 463 aaKnown RBP eCLIP22.94■■□□□ 1.262e-17■■■□□ 17.4
NME4-206ENST00000448828 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP21.44■■□□□ 1.028e-17■■■■■ 69.3
NME4-206ENST00000448828 NOLC1Q14978 699 aaKnown RBP eCLIP24.87■■□□□ 1.573e-12■□□□□ 10.9
NME4-206ENST00000448828 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP21.53■■□□□ 1.044e-12■□□□□ 10.9
NME4-206ENST00000448828 ZNF622Q969S3 477 aaKnown RBP eCLIP29.79■■■□□ 2.364e-12■□□□□ 10
NME4-206ENST00000448828 FTOQ9C0B1 505 aaKnown RBP eCLIP26.09■■□□□ 1.771e-11■■■■■ 53.6
NME4-206ENST00000448828 CDC40O60508 579 aaKnown RBP eCLIP21.1■□□□□ 0.971e-11■■□□□ 11.9
NME4-206ENST00000448828 DDX3XO00571 662 aaKnown RBP eCLIP23.07■■□□□ 1.281e-11■■■■■ 39.2
NME4-206ENST00000448828 YBX3P16989 372 aaKnown RBP eCLIP30.29■■■□□ 2.446e-11■□□□□ 10
NME4-206ENST00000448828 DDX21Q9NR30 783 aaKnown RBP eCLIP29.52■■■□□ 2.329e-11■■■■■ 80.7
NME4-206ENST00000448828 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP34.93■■■■□ 3.182e-10■■■■■ 37.2
NME4-206ENST00000448828 NKRFO15226 690 aaKnown RBP eCLIP26.35■■□□□ 1.812e-10■□□□□ 8.5
NME4-206ENST00000448828 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP19.31■□□□□ 0.682e-9■■■■□ 26.1
NME4-206ENST00000448828 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP23.45■■□□□ 1.343e-9■■■■■ 75.1
NME4-206ENST00000448828 UTP3Q9NQZ2 479 aaKnown RBP eCLIP24.2■■□□□ 1.463e-9■■■■■ 101.7
NME4-206ENST00000448828 RBFOX2O43251 390 aaKnown RBP eCLIP17.32■□□□□ 0.363e-9■■■□□ 16.7
NME4-206ENST00000448828 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP24.91■■□□□ 1.584e-9■■■■■ 61.2
NME4-206ENST00000448828 SF3B1O75533 1304 aaKnown RBP eCLIP24.94■■□□□ 1.585e-9■■■■■ 129.7
NME4-206ENST00000448828 PPIGQ13427 754 aaKnown RBP eCLIP26.3■■□□□ 1.85e-9■■□□□ 11.9
NME4-206ENST00000448828 DDX55Q8NHQ9 600 aaKnown RBP eCLIP27.98■■■□□ 2.075e-9■■■□□ 17.3
NME4-206ENST00000448828 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP22.37■■□□□ 1.176e-9■■■□□ 14.9
NME4-206ENST00000448828 PABPC4Q13310 644 aaKnown RBP eCLIP27.47■■□□□ 1.999e-9■■■■□ 24
NME4-206ENST00000448828 LARP4Q71RC2 724 aaKnown RBP eCLIP20.73■□□□□ 0.911e-8■■□□□ 12.8
NME4-206ENST00000448828 PUM1Q14671 1186 aaKnown RBP eCLIP23.83■■□□□ 1.411e-8■□□□□ 11.3
NME4-206ENST00000448828 RPS3P23396 243 aaKnown RBP eCLIP21.9■■□□□ 1.11e-8■□□□□ 10.9
NME4-206ENST00000448828 PABPN1Q86U42 306 aaKnown RBP eCLIP46.23■■■■■ 4.991e-8■■□□□ 14.2
NME4-206ENST00000448828 EWSR1Q01844 656 aaKnown RBP eCLIP16.71■□□□□ 0.272e-8■■■■□ 26.5
NME4-206ENST00000448828 NCBP2P52298 156 aaKnown RBP eCLIP20.77■□□□□ 0.923e-8■■■□□ 18.4
NME4-206ENST00000448828 PCBP2Q15366 365 aaKnown RBP eCLIP21.14■□□□□ 0.973e-8■■■■■ 31.3
NME4-206ENST00000448828 TIA1P31483 386 aaKnown RBP eCLIP20.85■□□□□ 0.933e-8■■□□□ 13.2
NME4-206ENST00000448828 DHX30Q7L2E3 1194 aaKnown RBP eCLIP26.69■■□□□ 1.863e-8■■■■■ 32.6
NME4-206ENST00000448828 PRPF4O43172 522 aaKnown RBP eCLIP21.64■■□□□ 1.054e-8■■■■■ 35.1
NME4-206ENST00000448828 RBM22Q9NW64 420 aaKnown RBP eCLIP22.74■■□□□ 1.235e-8■□□□□ 8.7
NME4-206ENST00000448828 NONOQ15233 471 aaKnown RBP eCLIP25.68■■□□□ 1.75e-8■■■■□ 23.5
NME4-206ENST00000448828 HNRNPUQ00839 825 aaKnown RBP eCLIP28.45■■■□□ 2.145e-8■□□□□ 9.6
NME4-206ENST00000448828 SLTMQ9NWH9 1034 aaKnown RBP eCLIP23.51■■□□□ 1.356e-8■■■□□ 17.5
NME4-206ENST00000448828 ZRANB2O95218 330 aaKnown RBP eCLIP22.54■■□□□ 1.21e-7■□□□□ 11.2
NME4-206ENST00000448828 SMNDC1O75940 238 aaKnown RBP eCLIP20.51■□□□□ 0.871e-7■■■□□ 15.9
NME4-206ENST00000448828 AQRO60306 1485 aaKnown RBP eCLIP40.51■■■■■ 4.072e-7■■■■■ 32.9
NME4-206ENST00000448828 BUD13Q9BRD0 619 aaKnown RBP eCLIP26.25■■□□□ 1.792e-7■■■□□ 15.1
NME4-206ENST00000448828 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP18.68■□□□□ 0.582e-7■■■■■ 40.5
NME4-206ENST00000448828 EFTUD2Q15029 972 aaKnown RBP eCLIP21.37■■□□□ 1.012e-7■■■□□ 17.8
NME4-206ENST00000448828 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP20.79■□□□□ 0.923e-7■■■■□ 24.4
NME4-206ENST00000448828 DDX51Q8N8A6 666 aaKnown RBP eCLIP23.54■■□□□ 1.364e-7■■□□□ 11.5
NME4-206ENST00000448828 LSM11P83369 360 aaKnown RBP eCLIP19.6■□□□□ 0.735e-7■■■■□ 25.3
NME4-206ENST00000448828 DDX24Q9GZR7 859 aaKnown RBP eCLIP27.49■■□□□ 1.995e-7■■■□□ 15.7
NME4-206ENST00000448828 IGF2BP3O00425 579 aaKnown RBP eCLIP27.94■■■□□ 2.065e-7■■■■■ 32
NME4-206ENST00000448828 XRN2Q9H0D6 950 aaKnown RBP eCLIP27.14■■□□□ 1.949e-7■■■■□ 20.7
NME4-206ENST00000448828 DDX6P26196 483 aaKnown RBP eCLIP24.26■■□□□ 1.479e-7■■■■□ 25
NME4-206ENST00000448828 SF3A3Q12874 501 aaKnown RBP eCLIP19.9■□□□□ 0.781e-6■■■■□ 23.8
NME4-206ENST00000448828 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP36.99■■■■□ 3.511e-6■■■□□ 18.6
NME4-206ENST00000448828 AATFQ9NY61 560 aaKnown RBP eCLIP27.77■■■□□ 2.042e-6■■■□□ 18.9
NME4-206ENST00000448828 METAP2P50579 478 aaKnown RBP eCLIP26.06■■□□□ 1.762e-6■□□□□ 11.1
NME4-206ENST00000448828 STAU2Q9NUL3 570 aaKnown RBP eCLIP22.98■■□□□ 1.272e-6■■□□□ 11.8
NME4-206ENST00000448828 WRNQ14191 1432 aaPredicted RBP eCLIP40.07■■■■■ 42e-6■■■□□ 15
NME4-206ENST00000448828 SRSF1Q07955 248 aaKnown RBP eCLIP21.51■■□□□ 1.033e-6■□□□□ 9.3
NME4-206ENST00000448828 EIF3GO75821 320 aaKnown RBP eCLIP15.89■□□□□ 0.133e-6■■■■□ 20.1
NME4-206ENST00000448828 FXR2P51116 673 aaKnown RBP eCLIP25.17■■□□□ 1.624e-6■■■■□ 23.1
NME4-206ENST00000448828 TBRG4Q969Z0 631 aaKnown RBP eCLIP22.15■■□□□ 1.147e-6■■■■■ 27.5
NME4-206ENST00000448828 SF3B4Q15427 424 aaKnown RBP eCLIP20.7■□□□□ 0.98e-6■■□□□ 11.6
Retrieved 65 of 65 RNA–protein pairs in 12.5 ms