RNA–Protein interactions for RNA: ENST00000444498.5

NME4-205, Transcript of NME/NM23 nucleoside diphosphate kinase 4, humanhuman

TSL 3

Gene NME4, Length 1,111 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NME4-205ENST00000444498 LIN28BQ6ZN17 250 aaKnown RBP eCLIP21.14■□□□□ 0.974e-32■■■■■ 238.3
NME4-205ENST00000444498 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP20.27■□□□□ 0.843e-18■■■■■ 191.3
NME4-205ENST00000444498 GTF2F1P35269 517 aaKnown RBP eCLIP20.7■□□□□ 0.94e-18■■■■■ 190.7
NME4-205ENST00000444498 SF3B1O75533 1304 aaKnown RBP eCLIP20.51■□□□□ 0.872e-7■■■■■ 126.3
NME4-205ENST00000444498 UTP3Q9NQZ2 479 aaKnown RBP eCLIP19.93■□□□□ 0.788e-7■■■■■ 96
NME4-205ENST00000444498 DDX21Q9NR30 783 aaKnown RBP eCLIP24.37■■□□□ 1.499e-11■■■■■ 80.7
NME4-205ENST00000444498 XRCC6P12956 609 aaKnown RBP eCLIP20.91■□□□□ 0.943e-14■■■■■ 75.4
NME4-205ENST00000444498 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP19.4■□□□□ 0.73e-9■■■■■ 75.1
NME4-205ENST00000444498 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP17.55■□□□□ 0.48e-17■■■■■ 69.3
NME4-205ENST00000444498 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP20.48■□□□□ 0.874e-9■■■■■ 61.2
NME4-205ENST00000444498 FTOQ9C0B1 505 aaKnown RBP eCLIP21.31■■□□□ 11e-11■■■■■ 53.6
NME4-205ENST00000444498 SAFB2Q14151 953 aaKnown RBP eCLIP27.12■■□□□ 1.934e-27■■■■■ 42.2
NME4-205ENST00000444498 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP15.56■□□□□ 0.082e-7■■■■■ 40.5
NME4-205ENST00000444498 DDX3XO00571 662 aaKnown RBP eCLIP19.2■□□□□ 0.661e-11■■■■■ 39.2
NME4-205ENST00000444498 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP28.76■■■□□ 2.22e-10■■■■■ 37.2
NME4-205ENST00000444498 AQRO60306 1485 aaKnown RBP eCLIP33.12■■■□□ 2.894e-7■■■■■ 35.6
NME4-205ENST00000444498 PRPF4O43172 522 aaKnown RBP eCLIP17.83■□□□□ 0.442e-7■■■■■ 34.5
NME4-205ENST00000444498 DHX30Q7L2E3 1194 aaKnown RBP eCLIP22.06■■□□□ 1.123e-8■■■■■ 32.6
NME4-205ENST00000444498 IGF2BP3O00425 579 aaKnown RBP eCLIP22.85■■□□□ 1.255e-7■■■■■ 32
NME4-205ENST00000444498 PCBP2Q15366 365 aaKnown RBP eCLIP17.6■□□□□ 0.413e-8■■■■■ 31.3
NME4-205ENST00000444498 TBRG4Q969Z0 631 aaKnown RBP eCLIP18.31■□□□□ 0.527e-6■■■■■ 27.5
NME4-205ENST00000444498 EWSR1Q01844 656 aaKnown RBP eCLIP13.69□□□□□ -0.222e-8■■■■□ 26.5
NME4-205ENST00000444498 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP15.93■□□□□ 0.143e-9■■■■□ 26.1
NME4-205ENST00000444498 U2AF2P26368 475 aaKnown RBP eCLIP20.98■□□□□ 0.954e-6■■■■□ 25.6
NME4-205ENST00000444498 SF3B4Q15427 424 aaKnown RBP eCLIP17.04■□□□□ 0.322e-8■■■■□ 25.4
NME4-205ENST00000444498 LSM11P83369 360 aaKnown RBP eCLIP16.27■□□□□ 0.25e-7■■■■□ 25.3
NME4-205ENST00000444498 DDX6P26196 483 aaKnown RBP eCLIP19.98■□□□□ 0.799e-7■■■■□ 25
NME4-205ENST00000444498 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP17.5■□□□□ 0.393e-7■■■■□ 24.4
NME4-205ENST00000444498 PABPC4Q13310 644 aaKnown RBP eCLIP22.53■■□□□ 1.29e-9■■■■□ 24
NME4-205ENST00000444498 NONOQ15233 471 aaKnown RBP eCLIP21.23■□□□□ 0.995e-8■■■■□ 23.5
NME4-205ENST00000444498 SF3A3Q12874 501 aaKnown RBP eCLIP16.55■□□□□ 0.246e-7■■■■□ 23.4
NME4-205ENST00000444498 FXR2P51116 673 aaKnown RBP eCLIP20.89■□□□□ 0.934e-6■■■■□ 23.1
NME4-205ENST00000444498 PCBP1Q15365 356 aaKnown RBP eCLIP20.84■□□□□ 0.932e-46■■■■□ 22.3
NME4-205ENST00000444498 XRN2Q9H0D6 950 aaKnown RBP eCLIP22.17■■□□□ 1.149e-7■■■■□ 20.7
NME4-205ENST00000444498 EIF3GO75821 320 aaKnown RBP eCLIP13.21□□□□□ -0.293e-6■■■■□ 20.1
NME4-205ENST00000444498 PTBP1P26599 531 aaKnown RBP eCLIP14.3□□□□□ -0.123e-9■■■■□ 19.8
NME4-205ENST00000444498 AATFQ9NY61 560 aaKnown RBP eCLIP22.84■■□□□ 1.252e-6■■■□□ 18.9
NME4-205ENST00000444498 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP30.31■■■□□ 2.441e-6■■■□□ 18.6
NME4-205ENST00000444498 NCBP2P52298 156 aaKnown RBP eCLIP17.18■□□□□ 0.344e-8■■■□□ 18.4
NME4-205ENST00000444498 EFTUD2Q15029 972 aaKnown RBP eCLIP17.76■□□□□ 0.434e-7■■■□□ 18.2
NME4-205ENST00000444498 SLTMQ9NWH9 1034 aaKnown RBP eCLIP19.44■□□□□ 0.76e-8■■■□□ 17.5
NME4-205ENST00000444498 BUD13Q9BRD0 619 aaKnown RBP eCLIP21.45■■□□□ 1.021e-7■■■□□ 17.5
NME4-205ENST00000444498 HNRNPKP61978 463 aaKnown RBP eCLIP18.85■□□□□ 0.612e-17■■■□□ 17.4
NME4-205ENST00000444498 DDX55Q8NHQ9 600 aaKnown RBP eCLIP22.96■■□□□ 1.275e-9■■■□□ 17.3
NME4-205ENST00000444498 RBFOX2O43251 390 aaKnown RBP eCLIP14.45□□□□□ -0.13e-9■■■□□ 16.7
NME4-205ENST00000444498 SMNDC1O75940 238 aaKnown RBP eCLIP16.79■□□□□ 0.281e-7■■■□□ 15.9
NME4-205ENST00000444498 DDX24Q9GZR7 859 aaKnown RBP eCLIP22.7■■□□□ 1.225e-7■■■□□ 15.7
NME4-205ENST00000444498 XPO5Q9HAV4 1204 aaKnown RBP eCLIP22.76■■□□□ 1.233e-6■■■□□ 15.1
NME4-205ENST00000444498 MATR3P43243 847 aaKnown RBP eCLIP20.47■□□□□ 0.872e-6■■■□□ 15.1
NME4-205ENST00000444498 WRNQ14191 1432 aaPredicted RBP eCLIP32.94■■■□□ 2.862e-6■■■□□ 15
NME4-205ENST00000444498 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP18.54■□□□□ 0.566e-9■■■□□ 14.9
NME4-205ENST00000444498 PABPN1Q86U42 306 aaKnown RBP eCLIP37.69■■■■□ 3.621e-8■■□□□ 14.2
NME4-205ENST00000444498 PPIGQ13427 754 aaKnown RBP eCLIP21.5■■□□□ 1.032e-8■■□□□ 13.7
NME4-205ENST00000444498 TIA1P31483 386 aaKnown RBP eCLIP17.3■□□□□ 0.363e-8■■□□□ 13.2
NME4-205ENST00000444498 LARP4Q71RC2 724 aaKnown RBP eCLIP17.12■□□□□ 0.331e-8■■□□□ 12.8
NME4-205ENST00000444498 SRSF9Q13242 221 aaKnown RBP eCLIP11.57□□□□□ -0.561e-6■■□□□ 12
NME4-205ENST00000444498 CDC40O60508 579 aaKnown RBP eCLIP17.25■□□□□ 0.351e-11■■□□□ 11.9
NME4-205ENST00000444498 STAU2Q9NUL3 570 aaKnown RBP eCLIP19.02■□□□□ 0.642e-6■■□□□ 11.8
NME4-205ENST00000444498 DDX51Q8N8A6 666 aaKnown RBP eCLIP19.45■□□□□ 0.74e-7■■□□□ 11.5
NME4-205ENST00000444498 PUM1Q14671 1186 aaKnown RBP eCLIP19.37■□□□□ 0.691e-8■□□□□ 11.3
NME4-205ENST00000444498 ZRANB2O95218 330 aaKnown RBP eCLIP18.75■□□□□ 0.591e-7■□□□□ 11.2
NME4-205ENST00000444498 METAP2P50579 478 aaKnown RBP eCLIP21.56■■□□□ 1.042e-6■□□□□ 11.1
NME4-205ENST00000444498 NOLC1Q14978 699 aaKnown RBP eCLIP20.52■□□□□ 0.883e-12■□□□□ 10.9
NME4-205ENST00000444498 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP18.08■□□□□ 0.484e-12■□□□□ 10.9
NME4-205ENST00000444498 RPS3P23396 243 aaKnown RBP eCLIP18.19■□□□□ 0.51e-8■□□□□ 10.9
NME4-205ENST00000444498 RBM22Q9NW64 420 aaKnown RBP eCLIP18.82■□□□□ 0.63e-8■□□□□ 10.5
NME4-205ENST00000444498 ZNF622Q969S3 477 aaKnown RBP eCLIP24.34■■□□□ 1.494e-12■□□□□ 10
NME4-205ENST00000444498 YBX3P16989 372 aaKnown RBP eCLIP24.68■■□□□ 1.546e-11■□□□□ 10
NME4-205ENST00000444498 HNRNPUQ00839 825 aaKnown RBP eCLIP23.66■■□□□ 1.385e-8■□□□□ 9.6
NME4-205ENST00000444498 SRSF1Q07955 248 aaKnown RBP eCLIP17.56■□□□□ 0.43e-6■□□□□ 9.3
NME4-205ENST00000444498 NKRFO15226 690 aaKnown RBP eCLIP21.69■■□□□ 1.062e-10■□□□□ 8.5
NME4-205ENST00000444498 GRWD1Q9BQ67 446 aaKnown RBP eCLIP28.72■■■□□ 2.192e-7■□□□□ 8
Retrieved 72 of 72 RNA–protein pairs in 25.2 ms