RNA–Protein interactions for RNA: ENST00000443839.1

SMPD4P1-203, Transcript of sphingomyelin phosphodiesterase 4 pseudogene 1, humanhuman

TSL 1 (best) BASIC

Gene SMPD4P1, Length 2,108 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4P1-203ENST00000443839 NISCHQ9Y2I1 1504 aa21.69■■□□□ 1.06
SMPD4P1-203ENST00000443839 CCDC180Q9P1Z9 1646 aa18.96■□□□□ 0.63
SMPD4P1-203ENST00000443839 ZCCHC6Q5VYS8 1495 aaKnown RBP18.2■□□□□ 0.5
SMPD4P1-203ENST00000443839 ABCC9O60706 1549 aa18.05■□□□□ 0.48
SMPD4P1-203ENST00000443839 DCAF8L2P0C7V8 631 aa18.01■□□□□ 0.47
SMPD4P1-203ENST00000443839 DCAF1Q9Y4B6 1507 aa17.92■□□□□ 0.46
SMPD4P1-203ENST00000443839 CHIC1Q5VXU3 224 aa17.8■□□□□ 0.44
SMPD4P1-203ENST00000443839 MYO15BQ96JP2 1530 aa17.75■□□□□ 0.43
SMPD4P1-203ENST00000443839 NACADO15069 1562 aa17.69■□□□□ 0.42
SMPD4P1-203ENST00000443839 SHROOM4Q9ULL8 1493 aa17.66■□□□□ 0.42
SMPD4P1-203ENST00000443839 AEBP2Q6ZN18 517 aaPredicted RBP17.65■□□□□ 0.42
SMPD4P1-203ENST00000443839 RB1CC1Q8TDY2 1594 aa17.58■□□□□ 0.4
SMPD4P1-203ENST00000443839 SCRIBQ14160 1630 aa17.45■□□□□ 0.38
SMPD4P1-203ENST00000443839 UNC13AQ9UPW8 1703 aa17.2■□□□□ 0.34
SMPD4P1-203ENST00000443839 BICRAQ9NZM4 1560 aa17.01■□□□□ 0.31
SMPD4P1-203ENST00000443839 PABPN1Q86U42 306 aaKnown RBP eCLIP17■□□□□ 0.31
SMPD4P1-203ENST00000443839 SUPT5HO00267 1087 aaKnown RBP16.95■□□□□ 0.3
SMPD4P1-203ENST00000443839 CECR2Q9BXF3 1484 aa16.86■□□□□ 0.29
SMPD4P1-203ENST00000443839 RSF1Q96T23 1441 aaPredicted RBP16.79■□□□□ 0.28
SMPD4P1-203ENST00000443839 BAZ1AQ9NRL2 1556 aaPredicted RBP16.77■□□□□ 0.28
SMPD4P1-203ENST00000443839 MROH2BQ7Z745 1585 aa16.75■□□□□ 0.27
SMPD4P1-203ENST00000443839 SMARCA4P51532 1647 aa16.7■□□□□ 0.26
SMPD4P1-203ENST00000443839 WIZO95785 1651 aa16.61■□□□□ 0.25
SMPD4P1-203ENST00000443839 EIF4G1Q04637 1599 aaKnown RBP16.54■□□□□ 0.24
SMPD4P1-203ENST00000443839 PEG3Q9GZU2 1588 aa16.49■□□□□ 0.23
SMPD4P1-203ENST00000443839 SMARCA2P51531 1590 aa16.46■□□□□ 0.22
SMPD4P1-203ENST00000443839 ATAD2BQ9ULI0 1458 aa16.45■□□□□ 0.22
SMPD4P1-203ENST00000443839 TOP2AP11388 1531 aaKnown RBP16.44■□□□□ 0.22
SMPD4P1-203ENST00000443839 BAZ1BQ9UIG0 1483 aaKnown RBP16.38■□□□□ 0.21
SMPD4P1-203ENST00000443839 NCAPD3P42695 1498 aa16.32■□□□□ 0.2
SMPD4P1-203ENST00000443839 CC2D2AQ9P2K1 1620 aa16.32■□□□□ 0.2
SMPD4P1-203ENST00000443839 HMGXB3Q12766 1538 aa16.3■□□□□ 0.2
SMPD4P1-203ENST00000443839 CCDC88BA6NC98 1476 aa16.27■□□□□ 0.2
SMPD4P1-203ENST00000443839 DNAJC5BQ9UF47 199 aa15.98■□□□□ 0.15
SMPD4P1-203ENST00000443839 TRIM41Q8WV44 630 aa15.94■□□□□ 0.14
SMPD4P1-203ENST00000443839 CFTRP13569 1480 aa15.94■□□□□ 0.14
SMPD4P1-203ENST00000443839 ABCC8Q09428 1581 aa15.91■□□□□ 0.14
SMPD4P1-203ENST00000443839 CADPSQ9ULU8 1353 aa15.91■□□□□ 0.14
SMPD4P1-203ENST00000443839 PRDM2Q13029 1718 aa15.85■□□□□ 0.13
SMPD4P1-203ENST00000443839 WRNQ14191 1432 aaPredicted RBP eCLIP15.83■□□□□ 0.12
SMPD4P1-203ENST00000443839 PHF23Q9BUL5 403 aaPredicted RBP15.8■□□□□ 0.12
SMPD4P1-203ENST00000443839 NESP48681 1621 aa15.8■□□□□ 0.12
SMPD4P1-203ENST00000443839 LAMC3Q9Y6N6 1575 aa15.8■□□□□ 0.12
SMPD4P1-203ENST00000443839 SYNJ1O43426 1573 aa15.75■□□□□ 0.11
SMPD4P1-203ENST00000443839 FANCD2Q9BXW9 1451 aa15.74■□□□□ 0.11
SMPD4P1-203ENST00000443839 PDS5BQ9NTI5 1447 aa15.69■□□□□ 0.1
SMPD4P1-203ENST00000443839 TOP2BQ02880 1626 aa15.69■□□□□ 0.1
SMPD4P1-203ENST00000443839 BIVM-ERCC5R4GMW8 1640 aa15.67■□□□□ 0.1
SMPD4P1-203ENST00000443839 CUX1P39880 1505 aa15.67■□□□□ 0.1
SMPD4P1-203ENST00000443839 CEP164Q9UPV0 1460 aa15.66■□□□□ 0.1
SMPD4P1-203ENST00000443839 FAM9AQ8IZU1 332 aaPredicted RBP15.65■□□□□ 0.1
SMPD4P1-203ENST00000443839 KIF21AQ7Z4S6 1674 aa15.61■□□□□ 0.09
SMPD4P1-203ENST00000443839 SOGA1O94964 1423 aa15.58■□□□□ 0.08
SMPD4P1-203ENST00000443839 DNMBPQ6XZF7 1577 aa15.57■□□□□ 0.08
SMPD4P1-203ENST00000443839 TOPBP1Q92547 1522 aa15.55■□□□□ 0.08
SMPD4P1-203ENST00000443839 EEA1Q15075 1411 aa15.54■□□□□ 0.08
SMPD4P1-203ENST00000443839 URB2Q14146 1524 aaKnown RBP15.54■□□□□ 0.08
SMPD4P1-203ENST00000443839 FGD5Q6ZNL6 1462 aa15.53■□□□□ 0.08
SMPD4P1-203ENST00000443839 LOC105371045A0A1W2PR82 267 aa15.52■□□□□ 0.07
SMPD4P1-203ENST00000443839 RUSC2Q8N2Y8 1516 aa15.52■□□□□ 0.07
SMPD4P1-203ENST00000443839 ERCC6Q03468 1493 aa15.51■□□□□ 0.07
SMPD4P1-203ENST00000443839 MRC2Q9UBG0 1479 aa15.49■□□□□ 0.07
SMPD4P1-203ENST00000443839 POLA1P09884 1462 aaPredicted RBP15.47■□□□□ 0.07
SMPD4P1-203ENST00000443839 CSRNP3Q8WYN3 585 aa15.47■□□□□ 0.07
SMPD4P1-203ENST00000443839 EHMT2Q96KQ7 1210 aa15.45■□□□□ 0.06
SMPD4P1-203ENST00000443839 KIF27Q86VH2 1401 aa15.44■□□□□ 0.06
SMPD4P1-203ENST00000443839 CUX2O14529 1486 aa15.42■□□□□ 0.06
SMPD4P1-203ENST00000443839 RAD54L2Q9Y4B4 1467 aa15.41■□□□□ 0.06
SMPD4P1-203ENST00000443839 WDR62O43379 1518 aa15.4■□□□□ 0.06
SMPD4P1-203ENST00000443839 ABCA10Q8WWZ4 1543 aa15.39■□□□□ 0.05
SMPD4P1-203ENST00000443839 THOC2Q8NI27 1593 aaKnown RBP15.37■□□□□ 0.05
SMPD4P1-203ENST00000443839 KIF21BO75037 1637 aa15.33■□□□□ 0.05
SMPD4P1-203ENST00000443839 GOLGA3Q08378 1498 aa15.33■□□□□ 0.04
SMPD4P1-203ENST00000443839 WDR97A6NE52 1622 aa15.33■□□□□ 0.04
SMPD4P1-203ENST00000443839 TARBP1Q13395 1621 aaKnown RBP15.31■□□□□ 0.04
SMPD4P1-203ENST00000443839 UBTFP17480 764 aaKnown RBP15.29■□□□□ 0.04
SMPD4P1-203ENST00000443839 IGF1RP08069 1367 aa15.29■□□□□ 0.04
SMPD4P1-203ENST00000443839 TDRD9Q8NDG6 1382 aaKnown RBP15.29■□□□□ 0.04
SMPD4P1-203ENST00000443839 IFT140Q96RY7 1462 aa15.28■□□□□ 0.04
SMPD4P1-203ENST00000443839 PRXQ9BXM0 1461 aa15.28■□□□□ 0.04
SMPD4P1-203ENST00000443839 RAPGEF2Q9Y4G8 1499 aa15.27■□□□□ 0.04
SMPD4P1-203ENST00000443839 ABCA5Q8WWZ7 1642 aa15.27■□□□□ 0.03
SMPD4P1-203ENST00000443839 GAPVD1Q14C86 1478 aa15.26■□□□□ 0.03
SMPD4P1-203ENST00000443839 ERICH3Q5RHP9 1530 aa15.25■□□□□ 0.03
SMPD4P1-203ENST00000443839 TNIKQ9UKE5 1360 aa15.24■□□□□ 0.03
SMPD4P1-203ENST00000443839 CARMIL1Q5VZK9 1371 aa15.23■□□□□ 0.03
SMPD4P1-203ENST00000443839 AQRO60306 1485 aaKnown RBP eCLIP15.2■□□□□ 0.02
SMPD4P1-203ENST00000443839 CUL7Q14999 1698 aa15.2■□□□□ 0.02
SMPD4P1-203ENST00000443839 ZNF608Q9ULD9 1512 aaPredicted RBP15.19■□□□□ 0.02
SMPD4P1-203ENST00000443839 CEP162Q5TB80 1403 aa15.18■□□□□ 0.02
SMPD4P1-203ENST00000443839 PBRM1Q86U86 1689 aa15.17■□□□□ 0.02
SMPD4P1-203ENST00000443839 EIF4G3O43432 1585 aaKnown RBP15.15■□□□□ 0.02
SMPD4P1-203ENST00000443839 GRIN2BQ13224 1484 aa15.15■□□□□ 0.02
SMPD4P1-203ENST00000443839 RANGAP1P46060 587 aaPredicted RBP15.09■□□□□ 0.01
SMPD4P1-203ENST00000443839 FHAD1B1AJZ9 1412 aa15.09■□□□□ 0.01
SMPD4P1-203ENST00000443839 CLIP1P30622 1438 aa15.09■□□□□ 0.01
SMPD4P1-203ENST00000443839 ADAMTS12P58397 1594 aa15.08■□□□□ 0
SMPD4P1-203ENST00000443839 SNAPC4Q5SXM2 1469 aa15.07■□□□□ 0
SMPD4P1-203ENST00000443839 MAGI1Q96QZ7 1491 aaPredicted RBP15.04■□□□□ -0
SMPD4P1-203ENST00000443839 CTTNBP2Q8WZ74 1663 aa15.01□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 7.2 ms