RNA–Protein interactions for RNA: ENST00000442691.6

NR1I3-211, Transcript of nuclear receptor subfamily 1 group I member 3, humanhuman

TSL 1 (best) BASIC

Gene NR1I3, Length 1,114 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NR1I3-211ENST00000442691 AEBP2Q6ZN18 517 aaPredicted RBP22.52■■□□□ 1.2
NR1I3-211ENST00000442691 CHIC1Q5VXU3 224 aa22.42■■□□□ 1.18
NR1I3-211ENST00000442691 NISCHQ9Y2I1 1504 aa20.91■□□□□ 0.94
NR1I3-211ENST00000442691 PHF23Q9BUL5 403 aaPredicted RBP19.75■□□□□ 0.75
NR1I3-211ENST00000442691 SENP3Q9H4L4 574 aaPredicted RBP19.07■□□□□ 0.64
NR1I3-211ENST00000442691 PLPPR3Q6T4P5 718 aa18.4■□□□□ 0.54
NR1I3-211ENST00000442691 CCDC180Q9P1Z9 1646 aa18.4■□□□□ 0.54
NR1I3-211ENST00000442691 FOXD1Q16676 465 aa17.65■□□□□ 0.42
NR1I3-211ENST00000442691 ZCCHC6Q5VYS8 1495 aaKnown RBP17.58■□□□□ 0.41
NR1I3-211ENST00000442691 DCAF1Q9Y4B6 1507 aa17.46■□□□□ 0.39
NR1I3-211ENST00000442691 MYO15BQ96JP2 1530 aa17.34■□□□□ 0.37
NR1I3-211ENST00000442691 ADRA2BP18089 450 aa17.33■□□□□ 0.36
NR1I3-211ENST00000442691 PPP6R1Q9UPN7 881 aa17.31■□□□□ 0.36
NR1I3-211ENST00000442691 ABCC9O60706 1549 aa17.21■□□□□ 0.35
NR1I3-211ENST00000442691 NACADO15069 1562 aa17.14■□□□□ 0.33
NR1I3-211ENST00000442691 RB1CC1Q8TDY2 1594 aa16.98■□□□□ 0.31
NR1I3-211ENST00000442691 DCAF8L2P0C7V8 631 aa16.97■□□□□ 0.31
NR1I3-211ENST00000442691 PIAS4Q8N2W9 510 aaPredicted RBP16.75■□□□□ 0.27
NR1I3-211ENST00000442691 SCRIBQ14160 1630 aa16.67■□□□□ 0.26
NR1I3-211ENST00000442691 SHROOM4Q9ULL8 1493 aa16.67■□□□□ 0.26
NR1I3-211ENST00000442691 UNC13AQ9UPW8 1703 aa16.48■□□□□ 0.23
NR1I3-211ENST00000442691 BICRAQ9NZM4 1560 aa16.38■□□□□ 0.21
NR1I3-211ENST00000442691 KCNA4P22459 653 aa16.35■□□□□ 0.21
NR1I3-211ENST00000442691 PPP4R3CPQ6ZMV5 832 aa16.28■□□□□ 0.2
NR1I3-211ENST00000442691 BAZ1AQ9NRL2 1556 aaPredicted RBP16.2■□□□□ 0.18
NR1I3-211ENST00000442691 RSF1Q96T23 1441 aaPredicted RBP16.13■□□□□ 0.17
NR1I3-211ENST00000442691 CECR2Q9BXF3 1484 aa16.12■□□□□ 0.17
NR1I3-211ENST00000442691 MSH5O43196 834 aa16.11■□□□□ 0.17
NR1I3-211ENST00000442691 PABPN1Q86U42 306 aaKnown RBP eCLIP16.11■□□□□ 0.17
NR1I3-211ENST00000442691 SMARCA4P51532 1647 aa16.08■□□□□ 0.17
NR1I3-211ENST00000442691 MROH2BQ7Z745 1585 aa16.06■□□□□ 0.16
NR1I3-211ENST00000442691 SUPT5HO00267 1087 aaKnown RBP16.02■□□□□ 0.16
NR1I3-211ENST00000442691 PEG3Q9GZU2 1588 aa16.01■□□□□ 0.15
NR1I3-211ENST00000442691 NCBP3Q53F19 620 aaKnown RBP15.98■□□□□ 0.15
NR1I3-211ENST00000442691 SMARCA2P51531 1590 aa15.92■□□□□ 0.14
NR1I3-211ENST00000442691 EIF4G1Q04637 1599 aaKnown RBP15.91■□□□□ 0.14
NR1I3-211ENST00000442691 WIZO95785 1651 aa15.88■□□□□ 0.13
NR1I3-211ENST00000442691 SCAF1Q9H7N4 1312 aaKnown RBP15.88■□□□□ 0.13
NR1I3-211ENST00000442691 TOP2AP11388 1531 aaKnown RBP15.87■□□□□ 0.13
NR1I3-211ENST00000442691 ATAD2BQ9ULI0 1458 aa15.84■□□□□ 0.13
NR1I3-211ENST00000442691 HMGXB3Q12766 1538 aa15.8■□□□□ 0.12
NR1I3-211ENST00000442691 NCAPD3P42695 1498 aa15.79■□□□□ 0.12
NR1I3-211ENST00000442691 BAZ1BQ9UIG0 1483 aaKnown RBP15.74■□□□□ 0.11
NR1I3-211ENST00000442691 NPM3O75607 178 aaKnown RBP15.72■□□□□ 0.11
NR1I3-211ENST00000442691 CNKSR2Q8WXI2 1034 aa15.72■□□□□ 0.11
NR1I3-211ENST00000442691 EHMT2Q96KQ7 1210 aa15.69■□□□□ 0.1
NR1I3-211ENST00000442691 SLC4A1APQ9BWU0 796 aaKnown RBP15.66■□□□□ 0.1
NR1I3-211ENST00000442691 CC2D2AQ9P2K1 1620 aa15.65■□□□□ 0.1
NR1I3-211ENST00000442691 CCDC88BA6NC98 1476 aa15.61■□□□□ 0.09
NR1I3-211ENST00000442691 MAPK8IP2Q13387 824 aaPredicted RBP15.6■□□□□ 0.09
NR1I3-211ENST00000442691 CFTRP13569 1480 aa15.39■□□□□ 0.05
NR1I3-211ENST00000442691 CADPSQ9ULU8 1353 aa15.32■□□□□ 0.04
NR1I3-211ENST00000442691 CSRNP3Q8WYN3 585 aa15.31■□□□□ 0.04
NR1I3-211ENST00000442691 PRDM2Q13029 1718 aa15.31■□□□□ 0.04
NR1I3-211ENST00000442691 RNF216Q9NWF9 866 aaPredicted RBP15.3■□□□□ 0.04
NR1I3-211ENST00000442691 DMRT2Q9Y5R5 561 aa15.28■□□□□ 0.04
NR1I3-211ENST00000442691 LAMC3Q9Y6N6 1575 aa15.28■□□□□ 0.04
NR1I3-211ENST00000442691 WRNQ14191 1432 aaPredicted RBP eCLIP15.21■□□□□ 0.03
NR1I3-211ENST00000442691 TRIM41Q8WV44 630 aa15.18■□□□□ 0.02
NR1I3-211ENST00000442691 DNAJC5BQ9UF47 199 aa15.18■□□□□ 0.02
NR1I3-211ENST00000442691 ABCC8Q09428 1581 aa15.16■□□□□ 0.02
NR1I3-211ENST00000442691 PDS5BQ9NTI5 1447 aa15.14■□□□□ 0.01
NR1I3-211ENST00000442691 TOP2BQ02880 1626 aa15.14■□□□□ 0.01
NR1I3-211ENST00000442691 BIVM-ERCC5R4GMW8 1640 aa15.14■□□□□ 0.01
NR1I3-211ENST00000442691 HOXD11P31277 338 aaPredicted RBP15.12■□□□□ 0.01
NR1I3-211ENST00000442691 FANCD2Q9BXW9 1451 aa15.12■□□□□ 0.01
NR1I3-211ENST00000442691 SYNJ1O43426 1573 aa15.09■□□□□ 0.01
NR1I3-211ENST00000442691 EEA1Q15075 1411 aa15.08■□□□□ 0
NR1I3-211ENST00000442691 CEP164Q9UPV0 1460 aa15.07■□□□□ 0
NR1I3-211ENST00000442691 NESP48681 1621 aa15.06■□□□□ 0
NR1I3-211ENST00000442691 CUX1P39880 1505 aa15.05■□□□□ -0
NR1I3-211ENST00000442691 ZBTB22O15209 634 aa15.03■□□□□ -0
NR1I3-211ENST00000442691 DNMBPQ6XZF7 1577 aa15.02■□□□□ -0
NR1I3-211ENST00000442691 TOPBP1Q92547 1522 aa14.95□□□□□ -0.02
NR1I3-211ENST00000442691 KIF21AQ7Z4S6 1674 aa14.94□□□□□ -0.02
NR1I3-211ENST00000442691 MRC2Q9UBG0 1479 aa14.93□□□□□ -0.02
NR1I3-211ENST00000442691 FOXD4L1Q9NU39 408 aa14.92□□□□□ -0.02
NR1I3-211ENST00000442691 URB2Q14146 1524 aaKnown RBP14.92□□□□□ -0.02
NR1I3-211ENST00000442691 FGD5Q6ZNL6 1462 aa14.9□□□□□ -0.02
NR1I3-211ENST00000442691 WDR62O43379 1518 aa14.87□□□□□ -0.03
NR1I3-211ENST00000442691 POLA1P09884 1462 aaPredicted RBP14.87□□□□□ -0.03
NR1I3-211ENST00000442691 SOGA1O94964 1423 aa14.86□□□□□ -0.03
NR1I3-211ENST00000442691 KIF27Q86VH2 1401 aa14.86□□□□□ -0.03
NR1I3-211ENST00000442691 ABCA10Q8WWZ4 1543 aa14.86□□□□□ -0.03
NR1I3-211ENST00000442691 ERCC6Q03468 1493 aa14.84□□□□□ -0.03
NR1I3-211ENST00000442691 THOC2Q8NI27 1593 aaKnown RBP14.81□□□□□ -0.04
NR1I3-211ENST00000442691 WDR97A6NE52 1622 aa14.81□□□□□ -0.04
NR1I3-211ENST00000442691 KIF21BO75037 1637 aa14.81□□□□□ -0.04
NR1I3-211ENST00000442691 CUX2O14529 1486 aa14.77□□□□□ -0.04
NR1I3-211ENST00000442691 ERICH3Q5RHP9 1530 aa14.76□□□□□ -0.05
NR1I3-211ENST00000442691 RUSC2Q8N2Y8 1516 aa14.76□□□□□ -0.05
NR1I3-211ENST00000442691 IFT140Q96RY7 1462 aa14.76□□□□□ -0.05
NR1I3-211ENST00000442691 TARBP1Q13395 1621 aaKnown RBP14.75□□□□□ -0.05
NR1I3-211ENST00000442691 GOLGA3Q08378 1498 aa14.75□□□□□ -0.05
NR1I3-211ENST00000442691 PRXQ9BXM0 1461 aa14.75□□□□□ -0.05
NR1I3-211ENST00000442691 SLC4A2P04920 1241 aa14.73□□□□□ -0.05
NR1I3-211ENST00000442691 ABCA5Q8WWZ7 1642 aa14.73□□□□□ -0.05
NR1I3-211ENST00000442691 FAM9AQ8IZU1 332 aaPredicted RBP14.72□□□□□ -0.05
NR1I3-211ENST00000442691 RAD54L2Q9Y4B4 1467 aa14.71□□□□□ -0.05
NR1I3-211ENST00000442691 CUL7Q14999 1698 aa14.69□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms