RNA–Protein interactions for RNA: ENST00000439259.1

AC012494.1-201, humanhuman

TSL 1 (best) BASIC

Gene AC012494.1, Length 1,103 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
AC012494.1-201ENST00000439259 AEBP2Q6ZN18 517 aaPredicted RBP25.22■■□□□ 1.63
AC012494.1-201ENST00000439259 CHIC1Q5VXU3 224 aa24.17■■□□□ 1.46
AC012494.1-201ENST00000439259 SENP3Q9H4L4 574 aaPredicted RBP21.68■■□□□ 1.06
AC012494.1-201ENST00000439259 PHF23Q9BUL5 403 aaPredicted RBP21.3■■□□□ 1
AC012494.1-201ENST00000439259 NISCHQ9Y2I1 1504 aa20.14■□□□□ 0.81
AC012494.1-201ENST00000439259 FOXD1Q16676 465 aa20.06■□□□□ 0.8
AC012494.1-201ENST00000439259 PLPPR3Q6T4P5 718 aa19.42■□□□□ 0.7
AC012494.1-201ENST00000439259 MSH5O43196 834 aa18.9■□□□□ 0.62
AC012494.1-201ENST00000439259 PIAS4Q8N2W9 510 aaPredicted RBP18.82■□□□□ 0.6
AC012494.1-201ENST00000439259 PPP6R1Q9UPN7 881 aa18.75■□□□□ 0.59
AC012494.1-201ENST00000439259 ADRA2BP18089 450 aa18.72■□□□□ 0.59
AC012494.1-201ENST00000439259 POTEDQ86YR6 584 aa18.12■□□□□ 0.49
AC012494.1-201ENST00000439259 ABCC9O60706 1549 aa18■□□□□ 0.47
AC012494.1-201ENST00000439259 CCDC180Q9P1Z9 1646 aa17.95■□□□□ 0.46
AC012494.1-201ENST00000439259 SCAF1Q9H7N4 1312 aaKnown RBP17.34■□□□□ 0.37
AC012494.1-201ENST00000439259 DMRT2Q9Y5R5 561 aa17.17■□□□□ 0.34
AC012494.1-201ENST00000439259 MAPK8IP2Q13387 824 aaPredicted RBP17.12■□□□□ 0.33
AC012494.1-201ENST00000439259 RB1CC1Q8TDY2 1594 aa17.08■□□□□ 0.32
AC012494.1-201ENST00000439259 DCAF8L2P0C7V8 631 aa17.07■□□□□ 0.32
AC012494.1-201ENST00000439259 NACADO15069 1562 aa16.98■□□□□ 0.31
AC012494.1-201ENST00000439259 PPP4R3CPQ6ZMV5 832 aa16.95■□□□□ 0.3
AC012494.1-201ENST00000439259 DNAJC5BQ9UF47 199 aa16.86■□□□□ 0.29
AC012494.1-201ENST00000439259 PABPN1Q86U42 306 aaKnown RBP eCLIP16.83■□□□□ 0.28
AC012494.1-201ENST00000439259 MYO15BQ96JP2 1530 aa16.75■□□□□ 0.27
AC012494.1-201ENST00000439259 ZCCHC6Q5VYS8 1495 aaKnown RBP16.71■□□□□ 0.27
AC012494.1-201ENST00000439259 UNC13AQ9UPW8 1703 aa16.7■□□□□ 0.26
AC012494.1-201ENST00000439259 CNKSR2Q8WXI2 1034 aa16.68■□□□□ 0.26
AC012494.1-201ENST00000439259 BICRAQ9NZM4 1560 aa16.63■□□□□ 0.25
AC012494.1-201ENST00000439259 HOXD11P31277 338 aaPredicted RBP16.59■□□□□ 0.25
AC012494.1-201ENST00000439259 DCAF1Q9Y4B6 1507 aa16.58■□□□□ 0.24
AC012494.1-201ENST00000439259 RNF216Q9NWF9 866 aaPredicted RBP16.51■□□□□ 0.23
AC012494.1-201ENST00000439259 SCRIBQ14160 1630 aa16.47■□□□□ 0.23
AC012494.1-201ENST00000439259 NCBP3Q53F19 620 aaKnown RBP16.45■□□□□ 0.22
AC012494.1-201ENST00000439259 DCAF8L1A6NGE4 600 aa16.39■□□□□ 0.21
AC012494.1-201ENST00000439259 SHROOM4Q9ULL8 1493 aa16.3■□□□□ 0.2
AC012494.1-201ENST00000439259 CC2D2AQ9P2K1 1620 aa16.22■□□□□ 0.19
AC012494.1-201ENST00000439259 EIF4G1Q04637 1599 aaKnown RBP16.2■□□□□ 0.18
AC012494.1-201ENST00000439259 CECR2Q9BXF3 1484 aa16.17■□□□□ 0.18
AC012494.1-201ENST00000439259 NPM3O75607 178 aaKnown RBP16.08■□□□□ 0.16
AC012494.1-201ENST00000439259 CACNB1Q02641 598 aaPredicted RBP16.05■□□□□ 0.16
AC012494.1-201ENST00000439259 RNF39Q9H2S5 420 aa16.05■□□□□ 0.16
AC012494.1-201ENST00000439259 C1QBPQ07021 282 aaKnown RBP15.89■□□□□ 0.13
AC012494.1-201ENST00000439259 KCNA4P22459 653 aa15.83■□□□□ 0.12
AC012494.1-201ENST00000439259 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.78■□□□□ 0.12
AC012494.1-201ENST00000439259 NCAPD3P42695 1498 aa15.71■□□□□ 0.1
AC012494.1-201ENST00000439259 ATAD2BQ9ULI0 1458 aa15.7■□□□□ 0.1
AC012494.1-201ENST00000439259 SMARCA4P51532 1647 aa15.68■□□□□ 0.1
AC012494.1-201ENST00000439259 SMARCA2P51531 1590 aa15.61■□□□□ 0.09
AC012494.1-201ENST00000439259 BAZ1AQ9NRL2 1556 aaPredicted RBP15.6■□□□□ 0.09
AC012494.1-201ENST00000439259 HMGXB3Q12766 1538 aa15.57■□□□□ 0.08
AC012494.1-201ENST00000439259 MROH2BQ7Z745 1585 aa15.56■□□□□ 0.08
AC012494.1-201ENST00000439259 BAZ1BQ9UIG0 1483 aaKnown RBP15.54■□□□□ 0.08
AC012494.1-201ENST00000439259 NESP48681 1621 aa15.5■□□□□ 0.07
AC012494.1-201ENST00000439259 ERCC6Q03468 1493 aa15.5■□□□□ 0.07
AC012494.1-201ENST00000439259 PEG3Q9GZU2 1588 aa15.49■□□□□ 0.07
AC012494.1-201ENST00000439259 U3KPZ7 1027 aaPredicted RBP15.43■□□□□ 0.06
AC012494.1-201ENST00000439259 CUX2O14529 1486 aa15.4■□□□□ 0.06
AC012494.1-201ENST00000439259 WIZO95785 1651 aa15.37■□□□□ 0.05
AC012494.1-201ENST00000439259 DNAJC5Q9H3Z4 198 aa15.34■□□□□ 0.05
AC012494.1-201ENST00000439259 LAMC3Q9Y6N6 1575 aa15.31■□□□□ 0.04
AC012494.1-201ENST00000439259 SLC4A2P04920 1241 aa15.3■□□□□ 0.04
AC012494.1-201ENST00000439259 RSF1Q96T23 1441 aaPredicted RBP15.27■□□□□ 0.04
AC012494.1-201ENST00000439259 THOC2Q8NI27 1593 aaKnown RBP15.26■□□□□ 0.03
AC012494.1-201ENST00000439259 CADPSQ9ULU8 1353 aa15.25■□□□□ 0.03
AC012494.1-201ENST00000439259 PDS5BQ9NTI5 1447 aa15.25■□□□□ 0.03
AC012494.1-201ENST00000439259 KIF21AQ7Z4S6 1674 aa15.24■□□□□ 0.03
AC012494.1-201ENST00000439259 APLP2Q06481 763 aa15.23■□□□□ 0.03
AC012494.1-201ENST00000439259 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.21■□□□□ 0.03
AC012494.1-201ENST00000439259 HNRNPUL2Q1KMD3 747 aaKnown RBP15.21■□□□□ 0.03
AC012494.1-201ENST00000439259 CAPN15O75808 1086 aa15.15■□□□□ 0.02
AC012494.1-201ENST00000439259 TOP2AP11388 1531 aaKnown RBP15.14■□□□□ 0.01
AC012494.1-201ENST00000439259 MRC2Q9UBG0 1479 aa15.12■□□□□ 0.01
AC012494.1-201ENST00000439259 SPINK5Q9NQ38 1064 aaPredicted RBP15.11■□□□□ 0.01
AC012494.1-201ENST00000439259 CFTRP13569 1480 aa15.09■□□□□ 0.01
AC012494.1-201ENST00000439259 FANCD2Q9BXW9 1451 aa15.08■□□□□ 0.01
AC012494.1-201ENST00000439259 SAMD1Q6SPF0 538 aaPredicted RBP15.08■□□□□ 0
AC012494.1-201ENST00000439259 CEP164Q9UPV0 1460 aa15.08■□□□□ 0
AC012494.1-201ENST00000439259 WDR62O43379 1518 aa15.07■□□□□ 0
AC012494.1-201ENST00000439259 DSG3P32926 999 aa15.04■□□□□ -0
AC012494.1-201ENST00000439259 SLC4A1APQ9BWU0 796 aaKnown RBP15.03■□□□□ -0
AC012494.1-201ENST00000439259 ZNF219Q9P2Y4 722 aaPredicted RBP15.03■□□□□ -0
AC012494.1-201ENST00000439259 CCDC88BA6NC98 1476 aa15.01□□□□□ -0.01
AC012494.1-201ENST00000439259 URB2Q14146 1524 aaKnown RBP14.97□□□□□ -0.01
AC012494.1-201ENST00000439259 MYCNP04198 464 aaPredicted RBP14.97□□□□□ -0.01
AC012494.1-201ENST00000439259 TRHP20396 242 aaPredicted RBP14.91□□□□□ -0.02
AC012494.1-201ENST00000439259 PRDM2Q13029 1718 aa14.86□□□□□ -0.03
AC012494.1-201ENST00000439259 FOXD4L1Q9NU39 408 aa14.85□□□□□ -0.03
AC012494.1-201ENST00000439259 TOPBP1Q92547 1522 aa14.81□□□□□ -0.04
AC012494.1-201ENST00000439259 ZNF608Q9ULD9 1512 aaPredicted RBP14.79□□□□□ -0.04
AC012494.1-201ENST00000439259 TRIM41Q8WV44 630 aa14.77□□□□□ -0.05
AC012494.1-201ENST00000439259 IFT140Q96RY7 1462 aa14.76□□□□□ -0.05
AC012494.1-201ENST00000439259 OSCARQ8IYS5 282 aa14.76□□□□□ -0.05
AC012494.1-201ENST00000439259 ABCB7O75027 752 aa14.75□□□□□ -0.05
AC012494.1-201ENST00000439259 SUPT5HO00267 1087 aaKnown RBP14.74□□□□□ -0.05
AC012494.1-201ENST00000439259 DNMBPQ6XZF7 1577 aa14.73□□□□□ -0.05
AC012494.1-201ENST00000439259 ABCC8Q09428 1581 aa14.72□□□□□ -0.05
AC012494.1-201ENST00000439259 AQRO60306 1485 aaKnown RBP eCLIP14.68□□□□□ -0.06
AC012494.1-201ENST00000439259 POLA1P09884 1462 aaPredicted RBP14.67□□□□□ -0.06
AC012494.1-201ENST00000439259 EIF4G3O43432 1585 aaKnown RBP14.66□□□□□ -0.06
AC012494.1-201ENST00000439259 TARBP1Q13395 1621 aaKnown RBP14.66□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 49.8 ms