RNA–Protein interactions for RNA: ENST00000439080.6

TARDBP-203, Transcript of TAR DNA binding protein, humanhuman

TSL 2

Gene TARDBP, Length 1,388 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TARDBP-203ENST00000439080 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP16.13■□□□□ 0.175e-8■■■■■ 204.6
TARDBP-203ENST00000439080 DDX3XO00571 662 aaKnown RBP eCLIP17.66■□□□□ 0.421e-28■■■■■ 35.7
TARDBP-203ENST00000439080 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP26.88■■□□□ 1.891e-7■■■■■ 34.9
TARDBP-203ENST00000439080 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP14.2□□□□□ -0.145e-9■■■■■ 33.2
TARDBP-203ENST00000439080 LIN28BQ6ZN17 250 aaKnown RBP eCLIP18.7■□□□□ 0.581e-28■■■■■ 32.6
TARDBP-203ENST00000439080 RBM22Q9NW64 420 aaKnown RBP eCLIP17.12■□□□□ 0.332e-7■■■■■ 31.6
TARDBP-203ENST00000439080 SMNDC1O75940 238 aaKnown RBP eCLIP15.06■□□□□ 02e-8■■■■■ 29.2
TARDBP-203ENST00000439080 TBRG4Q969Z0 631 aaKnown RBP eCLIP16.7■□□□□ 0.267e-6■■■■■ 27.5
TARDBP-203ENST00000439080 ZNF800Q2TB10 664 aaPredicted RBP eCLIP15.33■□□□□ 0.043e-6■■■■□ 22.6
TARDBP-203ENST00000439080 UTP3Q9NQZ2 479 aaKnown RBP eCLIP18.15■□□□□ 0.51e-7■■■■□ 22.4
TARDBP-203ENST00000439080 DDX6P26196 483 aaKnown RBP eCLIP17.83■□□□□ 0.451e-7■■■■□ 21
TARDBP-203ENST00000439080 RBM15Q96T37 977 aaKnown RBP eCLIP17.04■□□□□ 0.329e-7■■■□□ 18.3
TARDBP-203ENST00000439080 GTF2F1P35269 517 aaKnown RBP eCLIP18.22■□□□□ 0.517e-26■■■□□ 18.2
TARDBP-203ENST00000439080 NCBP2P52298 156 aaKnown RBP eCLIP15.72■□□□□ 0.111e-12■■■□□ 17.9
TARDBP-203ENST00000439080 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP25.95■■□□□ 1.741e-6■■■□□ 15.4
TARDBP-203ENST00000439080 U2AF1Q01081 240 aaKnown RBP eCLIP22.62■■□□□ 1.213e-7■■■□□ 15.3
TARDBP-203ENST00000439080 UPF1Q92900 1129 aaKnown RBP eCLIP22.65■■□□□ 1.222e-11■■■□□ 15.1
TARDBP-203ENST00000439080 AQRO60306 1485 aaKnown RBP eCLIP29.05■■■□□ 2.242e-7■■□□□ 14.3
TARDBP-203ENST00000439080 TIA1P31483 386 aaKnown RBP eCLIP15.87■□□□□ 0.131e-8■■□□□ 14.3
TARDBP-203ENST00000439080 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP22.63■■□□□ 1.213e-7■■□□□ 13.6
TARDBP-203ENST00000439080 GRWD1Q9BQ67 446 aaKnown RBP eCLIP25.49■■□□□ 1.672e-9■■□□□ 13.4
TARDBP-203ENST00000439080 PRPF4O43172 522 aaKnown RBP eCLIP16.05■□□□□ 0.162e-14■■□□□ 12.4
TARDBP-203ENST00000439080 HNRNPMP52272 730 aaKnown RBP eCLIP26.2■■□□□ 1.797e-7■■□□□ 12.4
TARDBP-203ENST00000439080 CDC40O60508 579 aaKnown RBP eCLIP15.43■□□□□ 0.065e-6■■□□□ 12.3
TARDBP-203ENST00000439080 BUD13Q9BRD0 619 aaKnown RBP eCLIP18.81■□□□□ 0.61e-11■■□□□ 11.7
TARDBP-203ENST00000439080 FXR2P51116 673 aaKnown RBP eCLIP19■□□□□ 0.632e-7■■□□□ 11.5
TARDBP-203ENST00000439080 SRSF1Q07955 248 aaKnown RBP eCLIP15.26■□□□□ 0.034e-8■□□□□ 11.3
TARDBP-203ENST00000439080 WRNQ14191 1432 aaPredicted RBP eCLIP29.39■■■□□ 2.296e-7■□□□□ 11.3
TARDBP-203ENST00000439080 RPS3P23396 243 aaKnown RBP eCLIP16.59■□□□□ 0.253e-8■□□□□ 11
TARDBP-203ENST00000439080 SF3B4Q15427 424 aaKnown RBP eCLIP15.22■□□□□ 0.032e-7■□□□□ 10.4
TARDBP-203ENST00000439080 KHSRPQ92945 711 aaKnown RBP eCLIP17.76■□□□□ 0.431e-9■□□□□ 10.4
TARDBP-203ENST00000439080 ZRANB2O95218 330 aaKnown RBP eCLIP17.23■□□□□ 0.355e-13■□□□□ 10.2
TARDBP-203ENST00000439080 G3BP1Q13283 466 aaKnown RBP eCLIP20.95■□□□□ 0.945e-9■□□□□ 10.1
TARDBP-203ENST00000439080 U2AF2P26368 475 aaKnown RBP eCLIP19.18■□□□□ 0.663e-10■□□□□ 10
TARDBP-203ENST00000439080 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP17.76■□□□□ 0.431e-6■□□□□ 9.2
TARDBP-203ENST00000439080 ZNF622Q969S3 477 aaKnown RBP eCLIP21.43■■□□□ 1.023e-23■□□□□ 9.1
TARDBP-203ENST00000439080 PPIGQ13427 754 aaKnown RBP eCLIP18.87■□□□□ 0.616e-7■□□□□ 8.8
TARDBP-203ENST00000439080 DDX24Q9GZR7 859 aaKnown RBP eCLIP20.5■□□□□ 0.872e-12■□□□□ 8.7
TARDBP-203ENST00000439080 ILF3Q12906 894 aaKnown RBP eCLIP16.71■□□□□ 0.276e-6■□□□□ 8.6
Retrieved 39 of 39 RNA–protein pairs in 9.1 ms