RNA–Protein interactions for RNA: ENST00000437681.1

SNHG3-202, Transcript of small nucleolar RNA host gene 3, humanhuman

TSL 2 BASIC

Gene SNHG3, Length 2,614 nt, Biotype retained intron, Subcellular localisation Cytoplasm .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG3-202ENST00000437681 FMR1Q06787 632 aaKnown RBP eCLIP13.59□□□□□ -0.231e-323■■■■■ 722.5
SNHG3-202ENST00000437681 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP9.41□□□□□ -0.93e-34■■■■■ 60.4
SNHG3-202ENST00000437681 ZC3H11AO75152 810 aaKnown RBP eCLIP12.4□□□□□ -0.434e-20■■■■■ 59.1
SNHG3-202ENST00000437681 CPSF6Q16630 551 aaKnown RBP eCLIP10.84□□□□□ -0.672e-48■■■■■ 54.4
SNHG3-202ENST00000437681 DKC1O60832 514 aaKnown RBP eCLIP13.01□□□□□ -0.331e-323■■■■■ 48.7
SNHG3-202ENST00000437681 AQRO60306 1485 aaKnown RBP eCLIP19.51■□□□□ 0.719e-27■■■■■ 34.6
SNHG3-202ENST00000437681 SF3B4Q15427 424 aaKnown RBP eCLIP10.52□□□□□ -0.731e-33■■■■■ 31.6
SNHG3-202ENST00000437681 TIA1P31483 386 aaKnown RBP eCLIP10.81□□□□□ -0.682e-22■■■■■ 27.6
SNHG3-202ENST00000437681 KHSRPQ92945 711 aaKnown RBP eCLIP11.97□□□□□ -0.494e-29■■■■■ 27.3
SNHG3-202ENST00000437681 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP10.55□□□□□ -0.724e-55■■■■□ 25.9
SNHG3-202ENST00000437681 EFTUD2Q15029 972 aaKnown RBP eCLIP11.08□□□□□ -0.642e-79■■■■□ 23.3
SNHG3-202ENST00000437681 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP11.34□□□□□ -0.592e-18■■■■□ 23.2
SNHG3-202ENST00000437681 RBFOX2O43251 390 aaKnown RBP eCLIP9.21□□□□□ -0.937e-11■■■■□ 20.7
SNHG3-202ENST00000437681 PUM2Q8TB72 1066 aaKnown RBP eCLIP10.79□□□□□ -0.683e-23■■■□□ 18.2
SNHG3-202ENST00000437681 HNRNPCP07910 306 aaKnown RBP eCLIP10.51□□□□□ -0.732e-17■■■□□ 15.7
SNHG3-202ENST00000437681 RBM22Q9NW64 420 aaKnown RBP eCLIP11.6□□□□□ -0.552e-30■■■□□ 15.2
SNHG3-202ENST00000437681 NCBP2P52298 156 aaKnown RBP eCLIP10.65□□□□□ -0.719e-33■■■□□ 14.8
SNHG3-202ENST00000437681 TIAL1Q01085 375 aaKnown RBP eCLIP11.17□□□□□ -0.625e-7■■□□□ 14.4
SNHG3-202ENST00000437681 RBM15Q96T37 977 aaKnown RBP eCLIP11.5□□□□□ -0.571e-8■■□□□ 14.3
SNHG3-202ENST00000437681 NOLC1Q14978 699 aaKnown RBP eCLIP12.56□□□□□ -0.43e-26■■□□□ 13.5
SNHG3-202ENST00000437681 NIPBLQ6KC79 2804 aaeCLIP8.93□□□□□ -0.983e-44■■□□□ 13
SNHG3-202ENST00000437681 SRSF1Q07955 248 aaKnown RBP eCLIP10.21□□□□□ -0.773e-23■■□□□ 12.7
SNHG3-202ENST00000437681 PPIGQ13427 754 aaKnown RBP eCLIP12.81□□□□□ -0.366e-13■■□□□ 12.6
SNHG3-202ENST00000437681 U2AF2P26368 475 aaKnown RBP eCLIP13.09□□□□□ -0.312e-12■■□□□ 11.6
SNHG3-202ENST00000437681 TBRG4Q969Z0 631 aaKnown RBP eCLIP11.41□□□□□ -0.583e-18■□□□□ 11.2
SNHG3-202ENST00000437681 AATFQ9NY61 560 aaKnown RBP eCLIP13.77□□□□□ -0.211e-34■□□□□ 11.1
SNHG3-202ENST00000437681 SRSF9Q13242 221 aaKnown RBP eCLIP7.7□□□□□ -1.182e-10■□□□□ 10.8
SNHG3-202ENST00000437681 GPKOWQ92917 476 aaPredicted RBP eCLIP13.1□□□□□ -0.316e-64■□□□□ 10.4
SNHG3-202ENST00000437681 BUD13Q9BRD0 619 aaKnown RBP eCLIP12.63□□□□□ -0.391e-42■□□□□ 10.2
SNHG3-202ENST00000437681 METAP2P50579 478 aaKnown RBP eCLIP13.31□□□□□ -0.289e-12■□□□□ 10
SNHG3-202ENST00000437681 SF3A3Q12874 501 aaKnown RBP eCLIP10.68□□□□□ -0.71e-13■□□□□ 9.9
Retrieved 31 of 31 RNA–protein pairs in 56 ms