RNA–Protein interactions for RNA: ENST00000435532.7

NEDD4-202, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NEDD4, Length 5,869 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-202ENST00000435532 DCAF8L2P0C7V8 631 aa28.02■■■□□ 2.08
NEDD4-202ENST00000435532 NISCHQ9Y2I1 1504 aa27.28■■□□□ 1.96
NEDD4-202ENST00000435532 SUPT5HO00267 1087 aaKnown RBP25.89■■□□□ 1.74
NEDD4-202ENST00000435532 SHROOM4Q9ULL8 1493 aa25.69■■□□□ 1.7
NEDD4-202ENST00000435532 FAM9AQ8IZU1 332 aaPredicted RBP25.24■■□□□ 1.63
NEDD4-202ENST00000435532 APLP2Q06481 763 aa24.92■■□□□ 1.58
NEDD4-202ENST00000435532 EHMT2Q96KQ7 1210 aa24.85■■□□□ 1.57
NEDD4-202ENST00000435532 TRIM41Q8WV44 630 aa24.22■■□□□ 1.47
NEDD4-202ENST00000435532 ATP1B4Q9UN42 357 aaPredicted RBP24.16■■□□□ 1.46
NEDD4-202ENST00000435532 RANGAP1P46060 587 aaPredicted RBP24.14■■□□□ 1.45
NEDD4-202ENST00000435532 UBTFP17480 764 aaKnown RBP23.99■■□□□ 1.43
NEDD4-202ENST00000435532 ABCC9O60706 1549 aa23.95■■□□□ 1.42
NEDD4-202ENST00000435532 TTBK1Q5TCY1 1321 aaPredicted RBP23.93■■□□□ 1.42
NEDD4-202ENST00000435532 PELP1Q8IZL8 1130 aaKnown RBP23.74■■□□□ 1.39
NEDD4-202ENST00000435532 PABPN1Q86U42 306 aaKnown RBP eCLIP23.6■■□□□ 1.37
NEDD4-202ENST00000435532 MYT1LQ9UL68 1186 aa23.58■■□□□ 1.37
NEDD4-202ENST00000435532 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.56■■□□□ 1.36
NEDD4-202ENST00000435532 HNRNPUL2Q1KMD3 747 aaKnown RBP23.56■■□□□ 1.36
NEDD4-202ENST00000435532 PCGF6Q9BYE7 350 aa23.48■■□□□ 1.35
NEDD4-202ENST00000435532 CCER1Q8TC90 406 aaPredicted RBP23.35■■□□□ 1.33
NEDD4-202ENST00000435532 ZEB1P37275 1124 aaPredicted RBP23.32■■□□□ 1.32
NEDD4-202ENST00000435532 ITGAEP38570 1179 aa22.97■■□□□ 1.27
NEDD4-202ENST00000435532 FBLN2P98095 1184 aa22.96■■□□□ 1.27
NEDD4-202ENST00000435532 PPARGC1BQ86YN6 1023 aaKnown RBP22.9■■□□□ 1.26
NEDD4-202ENST00000435532 CENPBP07199 599 aaPredicted RBP22.85■■□□□ 1.25
NEDD4-202ENST00000435532 CHIC1Q5VXU3 224 aa22.84■■□□□ 1.25
NEDD4-202ENST00000435532 CCDC180Q9P1Z9 1646 aa22.79■■□□□ 1.24
NEDD4-202ENST00000435532 SCRIBQ14160 1630 aa22.76■■□□□ 1.23
NEDD4-202ENST00000435532 TRIM26Q12899 539 aaPredicted RBP22.73■■□□□ 1.23
NEDD4-202ENST00000435532 POLR3GLQ9BT43 218 aa22.7■■□□□ 1.22
NEDD4-202ENST00000435532 NEFLP07196 543 aa22.67■■□□□ 1.22
NEDD4-202ENST00000435532 FAM50AQ14320 339 aaKnown RBP22.63■■□□□ 1.21
NEDD4-202ENST00000435532 RB1CC1Q8TDY2 1594 aa22.6■■□□□ 1.21
NEDD4-202ENST00000435532 LOC105371045A0A1W2PR82 267 aa22.58■■□□□ 1.21
NEDD4-202ENST00000435532 SLC4A1APQ9BWU0 796 aaKnown RBP22.58■■□□□ 1.21
NEDD4-202ENST00000435532 ERICH6Q7L0X2 663 aa22.54■■□□□ 1.2
NEDD4-202ENST00000435532 TRIM52Q96A61 297 aa22.53■■□□□ 1.2
NEDD4-202ENST00000435532 ZCCHC6Q5VYS8 1495 aaKnown RBP22.5■■□□□ 1.19
NEDD4-202ENST00000435532 NPM1P06748 294 aaKnown RBP eCLIP22.46■■□□□ 1.19
NEDD4-202ENST00000435532 CDK11AQ9UQ88 783 aaPredicted RBP22.43■■□□□ 1.18
NEDD4-202ENST00000435532 ESF1Q9H501 851 aaKnown RBP22.36■■□□□ 1.17
NEDD4-202ENST00000435532 YTHDC1Q96MU7 727 aaKnown RBP22.31■■□□□ 1.16
NEDD4-202ENST00000435532 BCANQ96GW7 911 aa22.29■■□□□ 1.16
NEDD4-202ENST00000435532 NACADO15069 1562 aa22.28■■□□□ 1.16
NEDD4-202ENST00000435532 P3H3Q8IVL6 736 aa22.28■■□□□ 1.16
NEDD4-202ENST00000435532 CSRNP3Q8WYN3 585 aa22.28■■□□□ 1.16
NEDD4-202ENST00000435532 ARID3CA6NKF2 412 aa22.23■■□□□ 1.15
NEDD4-202ENST00000435532 CNGB1Q14028 1251 aaPredicted RBP22.2■■□□□ 1.14
NEDD4-202ENST00000435532 ZNF777Q9ULD5 760 aaPredicted RBP22.18■■□□□ 1.14
NEDD4-202ENST00000435532 CHMP7Q8WUX9 453 aaPredicted RBP22.13■■□□□ 1.13
NEDD4-202ENST00000435532 NEUROD1Q13562 356 aa22.09■■□□□ 1.13
NEDD4-202ENST00000435532 ZNF326Q5BKZ1 582 aaKnown RBP22.09■■□□□ 1.13
NEDD4-202ENST00000435532 STAG3Q9UJ98 1225 aa22.03■■□□□ 1.12
NEDD4-202ENST00000435532 DAXXQ9UER7 740 aaPredicted RBP22.01■■□□□ 1.11
NEDD4-202ENST00000435532 ERCC6Q03468 1493 aa21.96■■□□□ 1.11
NEDD4-202ENST00000435532 BAZ1BQ9UIG0 1483 aaKnown RBP21.94■■□□□ 1.1
NEDD4-202ENST00000435532 HRCP23327 699 aa21.94■■□□□ 1.1
NEDD4-202ENST00000435532 NEFMP07197 916 aa21.91■■□□□ 1.1
NEDD4-202ENST00000435532 PLPPR3Q6T4P5 718 aa21.88■■□□□ 1.09
NEDD4-202ENST00000435532 CHGAP10645 457 aaKnown RBP21.85■■□□□ 1.09
NEDD4-202ENST00000435532 SLC24A1O60721 1099 aa21.78■■□□□ 1.08
NEDD4-202ENST00000435532 TSPY4P0CV99 314 aa21.75■■□□□ 1.07
NEDD4-202ENST00000435532 TSPY10P0CW01 314 aa21.75■■□□□ 1.07
NEDD4-202ENST00000435532 ZBTB47Q9UFB7 747 aaPredicted RBP21.73■■□□□ 1.07
NEDD4-202ENST00000435532 CLSPNQ9HAW4 1339 aa21.73■■□□□ 1.07
NEDD4-202ENST00000435532 ANP32CO43423 234 aa21.72■■□□□ 1.07
NEDD4-202ENST00000435532 MTUS2Q5JR59 1369 aa21.67■■□□□ 1.06
NEDD4-202ENST00000435532 PLEKHD1A6NEE1 506 aa21.64■■□□□ 1.06
NEDD4-202ENST00000435532 GRWD1Q9BQ67 446 aaKnown RBP eCLIP21.64■■□□□ 1.052e-6■■□□□ 14.1
NEDD4-202ENST00000435532 BAZ1AQ9NRL2 1556 aaPredicted RBP21.64■■□□□ 1.05
NEDD4-202ENST00000435532 DCAF1Q9Y4B6 1507 aa21.62■■□□□ 1.05
NEDD4-202ENST00000435532 DIEXFQ68CQ4 756 aaKnown RBP21.6■■□□□ 1.05
NEDD4-202ENST00000435532 RSF1Q96T23 1441 aaPredicted RBP21.6■■□□□ 1.05
NEDD4-202ENST00000435532 KCNH8Q96L42 1107 aa21.6■■□□□ 1.05
NEDD4-202ENST00000435532 EEA1Q15075 1411 aa21.58■■□□□ 1.05
NEDD4-202ENST00000435532 KIF27Q86VH2 1401 aa21.56■■□□□ 1.04
NEDD4-202ENST00000435532 WRNQ14191 1432 aaPredicted RBP eCLIP21.55■■□□□ 1.04
NEDD4-202ENST00000435532 CANXP27824 592 aaKnown RBP21.54■■□□□ 1.04
NEDD4-202ENST00000435532 TONSLQ96HA7 1378 aa21.54■■□□□ 1.04
NEDD4-202ENST00000435532 ARID4BQ4LE39 1312 aaPredicted RBP21.52■■□□□ 1.04
NEDD4-202ENST00000435532 CHIC2Q9UKJ5 165 aa21.52■■□□□ 1.04
NEDD4-202ENST00000435532 ACIN1Q9UKV3 1341 aaKnown RBP21.48■■□□□ 1.03
NEDD4-202ENST00000435532 PPP1R15AO75807 674 aaPredicted RBP21.46■■□□□ 1.03
NEDD4-202ENST00000435532 ZNF316A6NFI3 1004 aaPredicted RBP21.46■■□□□ 1.03
NEDD4-202ENST00000435532 CLIP1P30622 1438 aa21.46■■□□□ 1.03
NEDD4-202ENST00000435532 GOLGA3Q08378 1498 aa21.43■■□□□ 1.02
NEDD4-202ENST00000435532 PDS5BQ9NTI5 1447 aa21.43■■□□□ 1.02
NEDD4-202ENST00000435532 SMARCA2P51531 1590 aa21.4■■□□□ 1.02
NEDD4-202ENST00000435532 TRHP20396 242 aaPredicted RBP21.39■■□□□ 1.02
NEDD4-202ENST00000435532 SCAF1Q9H7N4 1312 aaKnown RBP21.36■■□□□ 1.01
NEDD4-202ENST00000435532 C14orf37Q86TY3 774 aa21.35■■□□□ 1.01
NEDD4-202ENST00000435532 CFDP1Q9UEE9 299 aaPredicted RBP21.31■■□□□ 1
NEDD4-202ENST00000435532 CEP164Q9UPV0 1460 aa21.27■■□□□ 1
NEDD4-202ENST00000435532 KDM2AQ9Y2K7 1162 aa21.24■□□□□ 0.99
NEDD4-202ENST00000435532 EIF4G1Q04637 1599 aaKnown RBP21.23■□□□□ 0.99
NEDD4-202ENST00000435532 CECR2Q9BXF3 1484 aa21.22■□□□□ 0.99
NEDD4-202ENST00000435532 RRP7BPQ9NSQ0 103 aa21.2■□□□□ 0.98
NEDD4-202ENST00000435532 CUX2O14529 1486 aa21.2■□□□□ 0.98
NEDD4-202ENST00000435532 HAP1P54257 671 aaPredicted RBP21.18■□□□□ 0.98
NEDD4-202ENST00000435532 BCL11AQ9H165 835 aa21.18■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 10 ms