RNA–Protein interactions for RNA: ENST00000433358.5

NME4-204, Transcript of NME/NM23 nucleoside diphosphate kinase 4, humanhuman

TSL 3

Gene NME4, Length 966 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NME4-204ENST00000433358 LIN28BQ6ZN17 250 aaKnown RBP eCLIP26.57■■□□□ 1.844e-32■■■■■ 238.3
NME4-204ENST00000433358 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP25.41■■□□□ 1.664e-18■■■■■ 191.3
NME4-204ENST00000433358 GTF2F1P35269 517 aaKnown RBP eCLIP26.06■■□□□ 1.764e-18■■■■■ 190.7
NME4-204ENST00000433358 SF3B1O75533 1304 aaKnown RBP eCLIP25.59■■□□□ 1.695e-9■■■■■ 129.7
NME4-204ENST00000433358 UTP3Q9NQZ2 479 aaKnown RBP eCLIP24.75■■□□□ 1.553e-9■■■■■ 101.7
NME4-204ENST00000433358 DDX21Q9NR30 783 aaKnown RBP eCLIP30.39■■■□□ 2.469e-11■■■■■ 80.7
NME4-204ENST00000433358 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP24.05■■□□□ 1.443e-9■■■■■ 75.1
NME4-204ENST00000433358 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP21.94■■□□□ 1.18e-17■■■■■ 69.3
NME4-204ENST00000433358 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP25.6■■□□□ 1.694e-9■■■■■ 61.2
NME4-204ENST00000433358 FTOQ9C0B1 505 aaKnown RBP eCLIP26.78■■□□□ 1.881e-11■■■■■ 53.6
NME4-204ENST00000433358 SAFB2Q14151 953 aaKnown RBP eCLIP34.01■■■■□ 3.034e-27■■■■■ 42.2
NME4-204ENST00000433358 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP19.04■□□□□ 0.642e-7■■■■■ 40.5
NME4-204ENST00000433358 DDX3XO00571 662 aaKnown RBP eCLIP23.68■■□□□ 1.381e-11■■■■■ 39.2
NME4-204ENST00000433358 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP35.96■■■■□ 3.352e-10■■■■■ 37.2
NME4-204ENST00000433358 AQRO60306 1485 aaKnown RBP eCLIP41.74■■■■■ 4.272e-7■■■■■ 32.9
NME4-204ENST00000433358 PRPF4O43172 522 aaKnown RBP eCLIP22.15■■□□□ 1.145e-8■■■■■ 32.8
NME4-204ENST00000433358 DHX30Q7L2E3 1194 aaKnown RBP eCLIP27.54■■■□□ 23e-8■■■■■ 32.6
NME4-204ENST00000433358 IGF2BP3O00425 579 aaKnown RBP eCLIP28.78■■■□□ 2.25e-7■■■■■ 32
NME4-204ENST00000433358 PCBP2Q15366 365 aaKnown RBP eCLIP21.7■■□□□ 1.063e-8■■■■■ 31.3
NME4-204ENST00000433358 TBRG4Q969Z0 631 aaKnown RBP eCLIP22.62■■□□□ 1.217e-6■■■■■ 27.5
NME4-204ENST00000433358 EWSR1Q01844 656 aaKnown RBP eCLIP17.17■□□□□ 0.342e-8■■■■□ 26.5
NME4-204ENST00000433358 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP19.77■□□□□ 0.762e-9■■■■□ 26.1
NME4-204ENST00000433358 LSM11P83369 360 aaKnown RBP eCLIP20.12■□□□□ 0.815e-7■■■■□ 25.3
NME4-204ENST00000433358 DDX6P26196 483 aaKnown RBP eCLIP24.92■■□□□ 1.589e-7■■■■□ 25
NME4-204ENST00000433358 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP21.29■■□□□ 13e-7■■■■□ 24.4
NME4-204ENST00000433358 SF3A3Q12874 501 aaKnown RBP eCLIP20.26■□□□□ 0.831e-6■■■■□ 23.8
NME4-204ENST00000433358 NONOQ15233 471 aaKnown RBP eCLIP26.33■■□□□ 1.815e-8■■■■□ 23.5
NME4-204ENST00000433358 FXR2P51116 673 aaKnown RBP eCLIP25.86■■□□□ 1.734e-6■■■■□ 23.1
NME4-204ENST00000433358 PCBP1Q15365 356 aaKnown RBP eCLIP25.91■■□□□ 1.742e-46■■■■□ 22.3
NME4-204ENST00000433358 PABPC4Q13310 644 aaKnown RBP eCLIP28.22■■■□□ 2.111e-8■■■■□ 22.1
NME4-204ENST00000433358 XRN2Q9H0D6 950 aaKnown RBP eCLIP27.91■■■□□ 2.069e-7■■■■□ 20.7
NME4-204ENST00000433358 EIF3GO75821 320 aaKnown RBP eCLIP16.19■□□□□ 0.183e-6■■■■□ 20.1
NME4-204ENST00000433358 AATFQ9NY61 560 aaKnown RBP eCLIP28.51■■■□□ 2.152e-6■■■□□ 18.9
NME4-204ENST00000433358 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP38.02■■■■□ 3.681e-6■■■□□ 18.6
NME4-204ENST00000433358 NCBP2P52298 156 aaKnown RBP eCLIP21.23■□□□□ 0.993e-8■■■□□ 18.4
NME4-204ENST00000433358 EFTUD2Q15029 972 aaKnown RBP eCLIP21.83■■□□□ 1.092e-7■■■□□ 17.8
NME4-204ENST00000433358 SLTMQ9NWH9 1034 aaKnown RBP eCLIP24.15■■□□□ 1.466e-8■■■□□ 17.5
NME4-204ENST00000433358 HNRNPKP61978 463 aaKnown RBP eCLIP23.55■■□□□ 1.362e-17■■■□□ 17.4
NME4-204ENST00000433358 DDX55Q8NHQ9 600 aaKnown RBP eCLIP28.81■■■□□ 2.25e-9■■■□□ 17.3
NME4-204ENST00000433358 RBFOX2O43251 390 aaKnown RBP eCLIP17.73■□□□□ 0.433e-9■■■□□ 16.7
NME4-204ENST00000433358 SMNDC1O75940 238 aaKnown RBP eCLIP20.96■□□□□ 0.951e-7■■■□□ 15.9
NME4-204ENST00000433358 DDX24Q9GZR7 859 aaKnown RBP eCLIP28.18■■■□□ 2.15e-7■■■□□ 15.7
NME4-204ENST00000433358 BUD13Q9BRD0 619 aaKnown RBP eCLIP27.03■■□□□ 1.922e-7■■■□□ 15.1
NME4-204ENST00000433358 WRNQ14191 1432 aaPredicted RBP eCLIP41.18■■■■■ 4.182e-6■■■□□ 15
NME4-204ENST00000433358 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP22.96■■□□□ 1.276e-9■■■□□ 14.9
NME4-204ENST00000433358 PABPN1Q86U42 306 aaKnown RBP eCLIP47.7■■■■■ 5.231e-8■■□□□ 14.2
NME4-204ENST00000433358 TIA1P31483 386 aaKnown RBP eCLIP21.33■■□□□ 1.013e-8■■□□□ 13.2
NME4-204ENST00000433358 LARP4Q71RC2 724 aaKnown RBP eCLIP21.22■□□□□ 0.991e-8■■□□□ 12.8
NME4-204ENST00000433358 PPIGQ13427 754 aaKnown RBP eCLIP27.03■■□□□ 1.925e-9■■□□□ 11.9
NME4-204ENST00000433358 CDC40O60508 579 aaKnown RBP eCLIP21.56■■□□□ 1.041e-11■■□□□ 11.9
NME4-204ENST00000433358 STAU2Q9NUL3 570 aaKnown RBP eCLIP23.5■■□□□ 1.352e-6■■□□□ 11.8
NME4-204ENST00000433358 SF3B4Q15427 424 aaKnown RBP eCLIP21.22■□□□□ 0.998e-6■■□□□ 11.6
NME4-204ENST00000433358 DDX51Q8N8A6 666 aaKnown RBP eCLIP24.22■■□□□ 1.474e-7■■□□□ 11.5
NME4-204ENST00000433358 PUM1Q14671 1186 aaKnown RBP eCLIP24.53■■□□□ 1.521e-8■□□□□ 11.3
NME4-204ENST00000433358 ZRANB2O95218 330 aaKnown RBP eCLIP23.11■■□□□ 1.291e-7■□□□□ 11.2
NME4-204ENST00000433358 METAP2P50579 478 aaKnown RBP eCLIP26.7■■□□□ 1.862e-6■□□□□ 11.1
NME4-204ENST00000433358 NOLC1Q14978 699 aaKnown RBP eCLIP25.48■■□□□ 1.673e-12■□□□□ 10.9
NME4-204ENST00000433358 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP21.97■■□□□ 1.114e-12■□□□□ 10.9
NME4-204ENST00000433358 RPS3P23396 243 aaKnown RBP eCLIP22.48■■□□□ 1.191e-8■□□□□ 10.9
NME4-204ENST00000433358 ZNF622Q969S3 477 aaKnown RBP eCLIP30.62■■■□□ 2.494e-12■□□□□ 10
NME4-204ENST00000433358 YBX3P16989 372 aaKnown RBP eCLIP31.24■■■□□ 2.596e-11■□□□□ 10
NME4-204ENST00000433358 HNRNPUQ00839 825 aaKnown RBP eCLIP29.1■■■□□ 2.255e-8■□□□□ 9.6
NME4-204ENST00000433358 SRSF1Q07955 248 aaKnown RBP eCLIP22.23■■□□□ 1.153e-6■□□□□ 9.3
NME4-204ENST00000433358 RBM22Q9NW64 420 aaKnown RBP eCLIP23.33■■□□□ 1.335e-8■□□□□ 8.7
NME4-204ENST00000433358 NKRFO15226 690 aaKnown RBP eCLIP27.1■■□□□ 1.933e-10■□□□□ 8.7
Retrieved 65 of 65 RNA–protein pairs in 11.8 ms