RNA–Protein interactions for RNA: ENST00000433355.6

SHPRH-205, Transcript of SNF2 histone linker PHD RING helicase, human

TSL 1 (best)

Gene SHPRH, Length 11,660 nt, Biotype nonsense mediated decay.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHPRH-205	ENST00000433355	QKI	Q96PU8	341 aa	Known RBP eCLIP	3.89	□□□□□ -1.79	2e-37	■■■■■ 280.4
SHPRH-205	ENST00000433355	SF3B1	O75533	1304 aa	Known RBP eCLIP	4.02	□□□□□ -1.77	6e-6	■■■■■ 103.4
SHPRH-205	ENST00000433355	GPKOW	Q92917	476 aa	Predicted RBP eCLIP	3.97	□□□□□ -1.77	2e-8	■■■■■ 52.2
SHPRH-205	ENST00000433355	UTP3	Q9NQZ2	479 aa	Known RBP eCLIP	3.96	□□□□□ -1.78	5e-9	■■■■■ 51.3
SHPRH-205	ENST00000433355	AQR	O60306	1485 aa	Known RBP eCLIP	5.52	□□□□□ -1.53	5e-10	■■■■■ 39.2
SHPRH-205	ENST00000433355	ZRANB2	O95218	330 aa	Known RBP eCLIP	3.99	□□□□□ -1.77	7e-6	■■■■■ 37.3
SHPRH-205	ENST00000433355	PTBP1	P26599	531 aa	Known RBP eCLIP	3.76	□□□□□ -1.81	5e-7	■■■■□ 26.3
SHPRH-205	ENST00000433355	MATR3	P43243	847 aa	Known RBP eCLIP	4.03	□□□□□ -1.76	9e-6	■■■■□ 23
SHPRH-205	ENST00000433355	U2AF2	P26368	475 aa	Known RBP eCLIP	4.24	□□□□□ -1.73	6e-7	■■■■□ 20
SHPRH-205	ENST00000433355	DDX24	Q9GZR7	859 aa	Known RBP eCLIP	4.51	□□□□□ -1.69	5e-7	■■■■□ 19.8
SHPRH-205	ENST00000433355	PRPF8	Q6P2Q9	2335 aa	Known RBP eCLIP	3.69	□□□□□ -1.82	8e-7	■■■□□ 18.9
SHPRH-205	ENST00000433355	BCLAF1	Q9NYF8	920 aa	Known RBP eCLIP	4.61	□□□□□ -1.67	3e-7	■■■□□ 18.4
SHPRH-205	ENST00000433355	EIF3H	O15372	352 aa	Known RBP eCLIP	4.07	□□□□□ -1.76	7e-7	■■■□□ 17.6
SHPRH-205	ENST00000433355	PPIG	Q13427	754 aa	Known RBP eCLIP	3.76	□□□□□ -1.81	5e-7	■■■□□ 16.4
SHPRH-205	ENST00000433355	BUD13	Q9BRD0	619 aa	Known RBP eCLIP	4.07	□□□□□ -1.76	2e-6	■■■□□ 16
SHPRH-205	ENST00000433355	UCHL5	Q9Y5K5	329 aa	Known RBP eCLIP	4.33	□□□□□ -1.72	7e-8	■■□□□ 14.4
SHPRH-205	ENST00000433355	SF3B4	Q15427	424 aa	Known RBP eCLIP	3.64	□□□□□ -1.83	5e-7	■■□□□ 13.9
SHPRH-205	ENST00000433355	KHSRP	Q92945	711 aa	Known RBP eCLIP	3.6	□□□□□ -1.83	8e-7	■■□□□ 13.2
SHPRH-205	ENST00000433355	HLTF	Q14527	1009 aa	Known RBP eCLIP	4.05	□□□□□ -1.76	3e-6	■■□□□ 13
SHPRH-205	ENST00000433355	GRWD1	Q9BQ67	446 aa	Known RBP eCLIP	4.68	□□□□□ -1.66	1e-6	■■□□□ 11.9
SHPRH-205	ENST00000433355	ZNF622	Q969S3	477 aa	Known RBP eCLIP	3.96	□□□□□ -1.78	5e-7	■□□□□ 11.3
SHPRH-205	ENST00000433355	SAFB2	Q14151	953 aa	Known RBP eCLIP	4.36	□□□□□ -1.71	1e-6	■□□□□ 10.6
SHPRH-205	ENST00000433355	HNRNPL	P14866	589 aa	Known RBP eCLIP	3.61	□□□□□ -1.83	2e-10	■□□□□ 9.8

Retrieved 23 of 23 RNA–protein pairs in 6.5 ms