RNA–Protein interactions for RNA: ENST00000430570.5

CPNE1-212, Transcript of copine 1, humanhuman

TSL 5

Gene CPNE1, Length 1,332 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-212ENST00000430570 UTP3Q9NQZ2 479 aaKnown RBP eCLIP27■■□□□ 1.911e-6■■■■■ 117.8
CPNE1-212ENST00000430570 XPO5Q9HAV4 1204 aaKnown RBP eCLIP30.15■■■□□ 2.429e-8■■■■■ 116.8
CPNE1-212ENST00000430570 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP24.38■■□□□ 1.493e-13■■■■■ 108.9
CPNE1-212ENST00000430570 SF3B1O75533 1304 aaKnown RBP eCLIP27.17■■□□□ 1.942e-6■■■■■ 85.9
CPNE1-212ENST00000430570 CSTF2P33240 577 aaKnown RBP eCLIP24.3■■□□□ 1.482e-45■■■■■ 66.1
CPNE1-212ENST00000430570 BUD13Q9BRD0 619 aaKnown RBP eCLIP27.98■■■□□ 2.074e-13■■■■■ 56.2
CPNE1-212ENST00000430570 WDR3Q9UNX4 943 aaKnown RBP eCLIP26.59■■□□□ 1.852e-6■■■■■ 55.4
CPNE1-212ENST00000430570 SF3B4Q15427 424 aaKnown RBP eCLIP22.57■■□□□ 1.21e-7■■■■■ 40.5
CPNE1-212ENST00000430570 EFTUD2Q15029 972 aaKnown RBP eCLIP24.51■■□□□ 1.514e-8■■■■■ 37.6
CPNE1-212ENST00000430570 ILF3Q12906 894 aaKnown RBP eCLIP24.79■■□□□ 1.567e-7■■■■■ 35.6
CPNE1-212ENST00000430570 PUM2Q8TB72 1066 aaKnown RBP eCLIP23.51■■□□□ 1.358e-8■■■■■ 32.7
CPNE1-212ENST00000430570 RBFOX2O43251 390 aaKnown RBP eCLIP19.78■□□□□ 0.763e-14■■■■■ 31.7
CPNE1-212ENST00000430570 TBRG4Q969Z0 631 aaKnown RBP eCLIP24.76■■□□□ 1.552e-6■■■■■ 26.8
CPNE1-212ENST00000430570 DDX24Q9GZR7 859 aaKnown RBP eCLIP30.44■■■□□ 2.463e-7■■■■□ 26.3
CPNE1-212ENST00000430570 GPKOWQ92917 476 aaPredicted RBP eCLIP29.04■■■□□ 2.241e-7■■■■□ 26.1
CPNE1-212ENST00000430570 HNRNPMP52272 730 aaKnown RBP eCLIP39.03■■■■□ 3.841e-7■■■■□ 25.4
CPNE1-212ENST00000430570 DDX6P26196 483 aaKnown RBP eCLIP26.46■■□□□ 1.839e-13■■■■□ 25.3
CPNE1-212ENST00000430570 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP20.38■□□□□ 0.851e-7■■■■□ 24.8
CPNE1-212ENST00000430570 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP25.03■■□□□ 1.62e-6■■■■□ 24.6
CPNE1-212ENST00000430570 AQRO60306 1485 aaKnown RBP eCLIP43.12■■■■■ 4.493e-7■■■■□ 24.5
CPNE1-212ENST00000430570 PABPN1Q86U42 306 aaKnown RBP eCLIP48.8■■■■■ 5.45e-6■■■■□ 22.2
CPNE1-212ENST00000430570 YBX3P16989 372 aaKnown RBP eCLIP31.88■■■□□ 2.692e-6■■■■□ 21.8
CPNE1-212ENST00000430570 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP23.25■■□□□ 1.315e-12■■■■□ 21.5
CPNE1-212ENST00000430570 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP20.93■□□□□ 0.949e-8■■■■□ 21.4
CPNE1-212ENST00000430570 SAFBQ15424 915 aaKnown RBP eCLIP28.6■■■□□ 2.171e-17■■■■□ 20.2
CPNE1-212ENST00000430570 FMR1Q06787 632 aaKnown RBP eCLIP30.61■■■□□ 2.497e-7■■■□□ 18.6
CPNE1-212ENST00000430570 FXR2P51116 673 aaKnown RBP eCLIP28.23■■■□□ 2.112e-6■■■□□ 18.4
CPNE1-212ENST00000430570 RPS3P23396 243 aaKnown RBP eCLIP24.65■■□□□ 1.543e-8■■■□□ 18.1
CPNE1-212ENST00000430570 TIA1P31483 386 aaKnown RBP eCLIP23.58■■□□□ 1.362e-6■■■□□ 17.9
CPNE1-212ENST00000430570 BCCIPQ9P287 314 aaKnown RBP eCLIP25.64■■□□□ 1.75e-7■■■□□ 17.8
CPNE1-212ENST00000430570 SF3A3Q12874 501 aaKnown RBP eCLIP23.27■■□□□ 1.324e-8■■■□□ 17.5
CPNE1-212ENST00000430570 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP23.94■■□□□ 1.424e-6■■■□□ 17.2
CPNE1-212ENST00000430570 HNRNPCP07910 306 aaKnown RBP eCLIP18.88■□□□□ 0.617e-7■■■□□ 17.1
CPNE1-212ENST00000430570 TIAL1Q01085 375 aaKnown RBP eCLIP24.54■■□□□ 1.523e-6■■■□□ 16
CPNE1-212ENST00000430570 KHSRPQ92945 711 aaKnown RBP eCLIP26.44■■□□□ 1.828e-8■■■□□ 15.7
CPNE1-212ENST00000430570 RBM5P52756 815 aaKnown RBP eCLIP30.69■■■□□ 2.52e-6■■■□□ 15.7
CPNE1-212ENST00000430570 DDX3XO00571 662 aaKnown RBP eCLIP26.29■■□□□ 1.81e-13■■■□□ 15.3
CPNE1-212ENST00000430570 QKIQ96PU8 341 aaKnown RBP eCLIP25.42■■□□□ 1.666e-7■■■□□ 15.2
CPNE1-212ENST00000430570 RBM15Q96T37 977 aaKnown RBP eCLIP25.34■■□□□ 1.652e-7■■■□□ 15.1
CPNE1-212ENST00000430570 PABPC4Q13310 644 aaKnown RBP eCLIP29.62■■■□□ 2.337e-7■■■□□ 14.8
CPNE1-212ENST00000430570 GTF2F1P35269 517 aaKnown RBP eCLIP27.13■■□□□ 1.936e-10■■■□□ 14.7
CPNE1-212ENST00000430570 HLTFQ14527 1009 aaKnown RBP eCLIP24.68■■□□□ 1.545e-8■■□□□ 14.2
CPNE1-212ENST00000430570 PPIGQ13427 754 aaKnown RBP eCLIP28.02■■■□□ 2.086e-12■■□□□ 13.7
CPNE1-212ENST00000430570 DDX59Q5T1V6 619 aaKnown RBP eCLIP22.99■■□□□ 1.272e-6■■□□□ 13.7
CPNE1-212ENST00000430570 EIF3HO15372 352 aaKnown RBP eCLIP24.68■■□□□ 1.548e-7■■□□□ 13.6
CPNE1-212ENST00000430570 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP38.47■■■■□ 3.757e-10■■□□□ 13.2
CPNE1-212ENST00000430570 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP39.74■■■■□ 3.951e-38■■□□□ 13.2
CPNE1-212ENST00000430570 ZRANB2O95218 330 aaKnown RBP eCLIP25.63■■□□□ 1.691e-6■■□□□ 12.9
CPNE1-212ENST00000430570 RBM22Q9NW64 420 aaKnown RBP eCLIP25.47■■□□□ 1.671e-6■■□□□ 12.5
CPNE1-212ENST00000430570 FUSP35637 526 aaKnown RBP eCLIP16.62■□□□□ 0.251e-10■■□□□ 12.2
CPNE1-212ENST00000430570 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP33.65■■■□□ 2.981e-6■■□□□ 12.2
CPNE1-212ENST00000430570 ZNF622Q969S3 477 aaKnown RBP eCLIP31.89■■■□□ 2.74e-6■■□□□ 12.1
CPNE1-212ENST00000430570 DDX55Q8NHQ9 600 aaKnown RBP eCLIP30.18■■■□□ 2.428e-6■■□□□ 11.7
CPNE1-212ENST00000430570 LIN28BQ6ZN17 250 aaKnown RBP eCLIP27.84■■■□□ 2.051e-8■■□□□ 11.7
CPNE1-212ENST00000430570 PRPF4O43172 522 aaKnown RBP eCLIP23.83■■□□□ 1.42e-8■□□□□ 11.3
CPNE1-212ENST00000430570 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP26.39■■□□□ 1.828e-7■□□□□ 11.3
CPNE1-212ENST00000430570 SLTMQ9NWH9 1034 aaKnown RBP eCLIP26.12■■□□□ 1.772e-10■□□□□ 11.3
CPNE1-212ENST00000430570 SFPQP23246 707 aaKnown RBP eCLIP27.78■■■□□ 2.048e-7■□□□□ 11.1
CPNE1-212ENST00000430570 G3BP1Q13283 466 aaKnown RBP eCLIP31.19■■■□□ 2.582e-8■□□□□ 11.1
CPNE1-212ENST00000430570 SDAD1Q9NVU7 687 aaKnown RBP eCLIP23.3■■□□□ 1.328e-7■□□□□ 11.1
CPNE1-212ENST00000430570 PCBP2Q15366 365 aaKnown RBP eCLIP24.03■■□□□ 1.441e-7■□□□□ 10.9
CPNE1-212ENST00000430570 GRSF1Q12849 480 aaKnown RBP eCLIP26■■□□□ 1.753e-10■□□□□ 10.9
CPNE1-212ENST00000430570 GRWD1Q9BQ67 446 aaKnown RBP eCLIP37.95■■■■□ 3.679e-9■□□□□ 10.7
CPNE1-212ENST00000430570 NIPBLQ6KC79 2804 aaeCLIP20.54■□□□□ 0.881e-8■□□□□ 10.5
CPNE1-212ENST00000430570 XRN2Q9H0D6 950 aaKnown RBP eCLIP28.92■■■□□ 2.226e-9■□□□□ 10.4
CPNE1-212ENST00000430570 HNRNPLP14866 589 aaKnown RBP eCLIP25.82■■□□□ 1.722e-8■□□□□ 10.1
CPNE1-212ENST00000430570 U2AF2P26368 475 aaKnown RBP eCLIP28.53■■■□□ 2.163e-26■□□□□ 9.9
CPNE1-212ENST00000430570 NCBP2P52298 156 aaKnown RBP eCLIP23.34■■□□□ 1.339e-8■□□□□ 9.8
CPNE1-212ENST00000430570 SRSF7Q16629 238 aaKnown RBP eCLIP20.27■□□□□ 0.831e-7■□□□□ 9.8
CPNE1-212ENST00000430570 TAF15Q92804 592 aaKnown RBP eCLIP20.25■□□□□ 0.831e-6■□□□□ 9.7
CPNE1-212ENST00000430570 FTOQ9C0B1 505 aaKnown RBP eCLIP28.28■■■□□ 2.125e-10■□□□□ 9.7
CPNE1-212ENST00000430570 DHX30Q7L2E3 1194 aaKnown RBP eCLIP29.16■■■□□ 2.263e-8■□□□□ 9.3
CPNE1-212ENST00000430570 SAFB2Q14151 953 aaKnown RBP eCLIP35.89■■■■□ 3.343e-13■□□□□ 9.1
CPNE1-212ENST00000430570 U2AF1Q01081 240 aaKnown RBP eCLIP33.65■■■□□ 2.982e-6■□□□□ 8.5
CPNE1-212ENST00000430570 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP25.55■■□□□ 1.682e-10■□□□□ 8.4
CPNE1-212ENST00000430570 PCBP1Q15365 356 aaKnown RBP eCLIP27.7■■■□□ 2.032e-19■□□□□ 8.2
CPNE1-212ENST00000430570 NOLC1Q14978 699 aaKnown RBP eCLIP27.49■■□□□ 1.993e-8■□□□□ 8.2
Retrieved 77 of 77 RNA–protein pairs in 1235 ms