RNA–Protein interactions for RNA: ENST00000424846.3

TPM3P9-201, Transcript of tropomyosin 3 pseudogene 9, humanhuman

TSL 1 (best) BASIC

Gene TPM3P9, Length 2,920 nt, Biotype processed transcript.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3P9-201ENST00000424846 NISCHQ9Y2I1 1504 aa28.77■■■□□ 2.2
TPM3P9-201ENST00000424846 SHROOM4Q9ULL8 1493 aa25.03■■□□□ 1.6
TPM3P9-201ENST00000424846 SUPT5HO00267 1087 aaKnown RBP24.62■■□□□ 1.53
TPM3P9-201ENST00000424846 ZCCHC6Q5VYS8 1495 aaKnown RBP24.37■■□□□ 1.49
TPM3P9-201ENST00000424846 CCDC180Q9P1Z9 1646 aa24.17■■□□□ 1.46
TPM3P9-201ENST00000424846 MYO15BQ96JP2 1530 aa24.06■■□□□ 1.44
TPM3P9-201ENST00000424846 DCAF8L2P0C7V8 631 aa24.05■■□□□ 1.44
TPM3P9-201ENST00000424846 CHIC1Q5VXU3 224 aa23.97■■□□□ 1.43
TPM3P9-201ENST00000424846 HRCP23327 699 aa23.64■■□□□ 1.38
TPM3P9-201ENST00000424846 PCGF6Q9BYE7 350 aa23.57■■□□□ 1.36
TPM3P9-201ENST00000424846 DCAF1Q9Y4B6 1507 aa23.43■■□□□ 1.34
TPM3P9-201ENST00000424846 LOC105371045A0A1W2PR82 267 aa23.42■■□□□ 1.34
TPM3P9-201ENST00000424846 PPARGC1BQ86YN6 1023 aaKnown RBP23.36■■□□□ 1.33
TPM3P9-201ENST00000424846 ABCC9O60706 1549 aa23.04■■□□□ 1.28
TPM3P9-201ENST00000424846 SCRIBQ14160 1630 aa22.97■■□□□ 1.27
TPM3P9-201ENST00000424846 RSF1Q96T23 1441 aaPredicted RBP22.94■■□□□ 1.26
TPM3P9-201ENST00000424846 TRIM26Q12899 539 aaPredicted RBP22.88■■□□□ 1.25
TPM3P9-201ENST00000424846 FAM9AQ8IZU1 332 aaPredicted RBP22.8■■□□□ 1.24
TPM3P9-201ENST00000424846 RB1CC1Q8TDY2 1594 aa22.8■■□□□ 1.24
TPM3P9-201ENST00000424846 TRIM41Q8WV44 630 aa22.77■■□□□ 1.24
TPM3P9-201ENST00000424846 EHMT2Q96KQ7 1210 aa22.73■■□□□ 1.23
TPM3P9-201ENST00000424846 CECR2Q9BXF3 1484 aa22.59■■□□□ 1.21
TPM3P9-201ENST00000424846 MROH2BQ7Z745 1585 aa22.49■■□□□ 1.19
TPM3P9-201ENST00000424846 WIZO95785 1651 aa22.39■■□□□ 1.17
TPM3P9-201ENST00000424846 ZEB1P37275 1124 aaPredicted RBP22.34■■□□□ 1.17
TPM3P9-201ENST00000424846 NACADO15069 1562 aa22.32■■□□□ 1.16
TPM3P9-201ENST00000424846 BAZ1AQ9NRL2 1556 aaPredicted RBP22.12■■□□□ 1.13
TPM3P9-201ENST00000424846 EIF4G1Q04637 1599 aaKnown RBP22.12■■□□□ 1.13
TPM3P9-201ENST00000424846 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.11■■□□□ 1.13
TPM3P9-201ENST00000424846 SCAF1Q9H7N4 1312 aaKnown RBP22.05■■□□□ 1.12
TPM3P9-201ENST00000424846 ABCC8Q09428 1581 aa22.04■■□□□ 1.12
TPM3P9-201ENST00000424846 TTBK1Q5TCY1 1321 aaPredicted RBP22.03■■□□□ 1.12
TPM3P9-201ENST00000424846 CCDC88BA6NC98 1476 aa21.99■■□□□ 1.11
TPM3P9-201ENST00000424846 CCER1Q8TC90 406 aaPredicted RBP21.95■■□□□ 1.1
TPM3P9-201ENST00000424846 TOP2AP11388 1531 aaKnown RBP21.89■■□□□ 1.1
TPM3P9-201ENST00000424846 SOGA1O94964 1423 aa21.88■■□□□ 1.09
TPM3P9-201ENST00000424846 SMARCA4P51532 1647 aa21.85■■□□□ 1.09
TPM3P9-201ENST00000424846 SMARCA2P51531 1590 aa21.85■■□□□ 1.09
TPM3P9-201ENST00000424846 CEP162Q5TB80 1403 aa21.82■■□□□ 1.08
TPM3P9-201ENST00000424846 RUSC2Q8N2Y8 1516 aa21.82■■□□□ 1.08
TPM3P9-201ENST00000424846 UNC13AQ9UPW8 1703 aa21.76■■□□□ 1.07
TPM3P9-201ENST00000424846 WRNQ14191 1432 aaPredicted RBP eCLIP21.76■■□□□ 1.07
TPM3P9-201ENST00000424846 NEUROD1Q13562 356 aa21.7■■□□□ 1.06
TPM3P9-201ENST00000424846 UBTFP17480 764 aaKnown RBP21.69■■□□□ 1.06
TPM3P9-201ENST00000424846 TNIKQ9UKE5 1360 aa21.69■■□□□ 1.06
TPM3P9-201ENST00000424846 CSRNP3Q8WYN3 585 aa21.68■■□□□ 1.06
TPM3P9-201ENST00000424846 DIEXFQ68CQ4 756 aaKnown RBP21.66■■□□□ 1.06
TPM3P9-201ENST00000424846 PABPN1Q86U42 306 aaKnown RBP eCLIP21.66■■□□□ 1.06
TPM3P9-201ENST00000424846 ACIN1Q9UKV3 1341 aaKnown RBP21.64■■□□□ 1.06
TPM3P9-201ENST00000424846 EEA1Q15075 1411 aa21.52■■□□□ 1.04
TPM3P9-201ENST00000424846 PELP1Q8IZL8 1130 aaKnown RBP21.52■■□□□ 1.03
TPM3P9-201ENST00000424846 GOLGA3Q08378 1498 aa21.51■■□□□ 1.03
TPM3P9-201ENST00000424846 BICRAQ9NZM4 1560 aa21.48■■□□□ 1.03
TPM3P9-201ENST00000424846 GTF3C3Q9Y5Q9 886 aa21.47■■□□□ 1.03
TPM3P9-201ENST00000424846 SYNJ1O43426 1573 aa21.45■■□□□ 1.02
TPM3P9-201ENST00000424846 HNRNPUL2Q1KMD3 747 aaKnown RBP21.45■■□□□ 1.02
TPM3P9-201ENST00000424846 ZNF316A6NFI3 1004 aaPredicted RBP21.39■■□□□ 1.01
TPM3P9-201ENST00000424846 RANGAP1P46060 587 aaPredicted RBP21.38■■□□□ 1.01
TPM3P9-201ENST00000424846 CENPBP07199 599 aaPredicted RBP21.35■■□□□ 1.01
TPM3P9-201ENST00000424846 CEP164Q9UPV0 1460 aa21.34■■□□□ 1.01
TPM3P9-201ENST00000424846 CLIP1P30622 1438 aa21.34■■□□□ 1.01
TPM3P9-201ENST00000424846 PEG3Q9GZU2 1588 aa21.32■■□□□ 1
TPM3P9-201ENST00000424846 YTHDC1Q96MU7 727 aaKnown RBP21.3■■□□□ 1
TPM3P9-201ENST00000424846 RAPGEF2Q9Y4G8 1499 aa21.3■■□□□ 1
TPM3P9-201ENST00000424846 KIF21BO75037 1637 aa21.29■■□□□ 1
TPM3P9-201ENST00000424846 ATAD2BQ9ULI0 1458 aa21.25■□□□□ 0.99
TPM3P9-201ENST00000424846 MIER1Q8N108 512 aa21.25■□□□□ 0.99
TPM3P9-201ENST00000424846 VPS8Q8N3P4 1428 aa21.24■□□□□ 0.99
TPM3P9-201ENST00000424846 BAZ1BQ9UIG0 1483 aaKnown RBP21.19■□□□□ 0.98
TPM3P9-201ENST00000424846 APLP2Q06481 763 aa21.13■□□□□ 0.97
TPM3P9-201ENST00000424846 TOP2BQ02880 1626 aa21.05■□□□□ 0.96
TPM3P9-201ENST00000424846 KANK4Q5T7N3 995 aaPredicted RBP21.03■□□□□ 0.96
TPM3P9-201ENST00000424846 ARAP1Q96P48 1450 aa20.99■□□□□ 0.95
TPM3P9-201ENST00000424846 DHX57Q6P158 1386 aaKnown RBP20.96■□□□□ 0.95
TPM3P9-201ENST00000424846 PRXQ9BXM0 1461 aa20.96■□□□□ 0.95
TPM3P9-201ENST00000424846 BIVM-ERCC5R4GMW8 1640 aa20.94■□□□□ 0.94
TPM3P9-201ENST00000424846 CUX1P39880 1505 aa20.89■□□□□ 0.93
TPM3P9-201ENST00000424846 ERICH3Q5RHP9 1530 aa20.88■□□□□ 0.93
TPM3P9-201ENST00000424846 ITGAEP38570 1179 aa20.81■□□□□ 0.92
TPM3P9-201ENST00000424846 RRBP1Q9P2E9 1410 aaKnown RBP20.77■□□□□ 0.92
TPM3P9-201ENST00000424846 CLSPNQ9HAW4 1339 aa20.77■□□□□ 0.91
TPM3P9-201ENST00000424846 ARHGAP35Q9NRY4 1499 aa20.77■□□□□ 0.91
TPM3P9-201ENST00000424846 KIF27Q86VH2 1401 aa20.76■□□□□ 0.91
TPM3P9-201ENST00000424846 NCAPD3P42695 1498 aa20.72■□□□□ 0.91
TPM3P9-201ENST00000424846 CCNB3Q8WWL7 1395 aa20.71■□□□□ 0.91
TPM3P9-201ENST00000424846 HMGXB3Q12766 1538 aa20.69■□□□□ 0.9
TPM3P9-201ENST00000424846 CFTRP13569 1480 aa20.67■□□□□ 0.9
TPM3P9-201ENST00000424846 CUX2O14529 1486 aa20.64■□□□□ 0.9
TPM3P9-201ENST00000424846 KCNH8Q96L42 1107 aa20.64■□□□□ 0.89
TPM3P9-201ENST00000424846 RAB3GAP2Q9H2M9 1393 aa20.61■□□□□ 0.89
TPM3P9-201ENST00000424846 IGF1RP08069 1367 aa20.6■□□□□ 0.89
TPM3P9-201ENST00000424846 SUPT16HQ9Y5B9 1047 aaKnown RBP20.6■□□□□ 0.89
TPM3P9-201ENST00000424846 MAPKBP1O60336 1514 aa20.58■□□□□ 0.88
TPM3P9-201ENST00000424846 P3H3Q8IVL6 736 aa20.54■□□□□ 0.88
TPM3P9-201ENST00000424846 PHLDB1Q86UU1 1377 aa20.53■□□□□ 0.88
TPM3P9-201ENST00000424846 TIAM1Q13009 1591 aa20.52■□□□□ 0.88
TPM3P9-201ENST00000424846 SIN3AQ96ST3 1273 aa20.52■□□□□ 0.88
TPM3P9-201ENST00000424846 CARMIL1Q5VZK9 1371 aa20.5■□□□□ 0.87
TPM3P9-201ENST00000424846 FAM50AQ14320 339 aaKnown RBP20.47■□□□□ 0.87
TPM3P9-201ENST00000424846 FGD5Q6ZNL6 1462 aa20.46■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms