RNA–Protein interactions for RNA: ENST00000421324.4

AC012560.1-202, humanhuman

TSL 1 (best) BASIC

Gene AC012560.1, Length 535 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
AC012560.1-202ENST00000421324 AEBP2Q6ZN18 517 aaPredicted RBP25.85■■□□□ 1.73
AC012560.1-202ENST00000421324 CHIC1Q5VXU3 224 aa24.93■■□□□ 1.58
AC012560.1-202ENST00000421324 PHF23Q9BUL5 403 aaPredicted RBP21.94■■□□□ 1.1
AC012560.1-202ENST00000421324 SENP3Q9H4L4 574 aaPredicted RBP21.91■■□□□ 1.1
AC012560.1-202ENST00000421324 FOXD1Q16676 465 aa20.41■□□□□ 0.86
AC012560.1-202ENST00000421324 PLPPR3Q6T4P5 718 aa20.07■□□□□ 0.8
AC012560.1-202ENST00000421324 PPP6R1Q9UPN7 881 aa19.44■□□□□ 0.7
AC012560.1-202ENST00000421324 ADRA2BP18089 450 aa19.37■□□□□ 0.69
AC012560.1-202ENST00000421324 PIAS4Q8N2W9 510 aaPredicted RBP19.12■□□□□ 0.65
AC012560.1-202ENST00000421324 MSH5O43196 834 aa18.89■□□□□ 0.61
AC012560.1-202ENST00000421324 NISCHQ9Y2I1 1504 aa18.23■□□□□ 0.51
AC012560.1-202ENST00000421324 POTEDQ86YR6 584 aa17.75■□□□□ 0.43
AC012560.1-202ENST00000421324 MAPK8IP2Q13387 824 aaPredicted RBP17.68■□□□□ 0.42
AC012560.1-202ENST00000421324 PPP4R3CPQ6ZMV5 832 aa17.66■□□□□ 0.42
AC012560.1-202ENST00000421324 SCAF1Q9H7N4 1312 aaKnown RBP17.66■□□□□ 0.42
AC012560.1-202ENST00000421324 DMRT2Q9Y5R5 561 aa17.47■□□□□ 0.39
AC012560.1-202ENST00000421324 CNKSR2Q8WXI2 1034 aa17.23■□□□□ 0.35
AC012560.1-202ENST00000421324 NCBP3Q53F19 620 aaKnown RBP17.07■□□□□ 0.32
AC012560.1-202ENST00000421324 HOXD11P31277 338 aaPredicted RBP17.02■□□□□ 0.32
AC012560.1-202ENST00000421324 RNF216Q9NWF9 866 aaPredicted RBP16.98■□□□□ 0.31
AC012560.1-202ENST00000421324 KCNA4P22459 653 aa16.93■□□□□ 0.3
AC012560.1-202ENST00000421324 NPM3O75607 178 aaKnown RBP16.88■□□□□ 0.29
AC012560.1-202ENST00000421324 DCAF8L1A6NGE4 600 aa16.62■□□□□ 0.25
AC012560.1-202ENST00000421324 DNAJC5BQ9UF47 199 aa16.52■□□□□ 0.24
AC012560.1-202ENST00000421324 RNF39Q9H2S5 420 aa16.21■□□□□ 0.19
AC012560.1-202ENST00000421324 CCDC180Q9P1Z9 1646 aa16.19■□□□□ 0.18
AC012560.1-202ENST00000421324 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.12■□□□□ 0.17
AC012560.1-202ENST00000421324 SLC4A2P04920 1241 aa16.05■□□□□ 0.16
AC012560.1-202ENST00000421324 SLC4A1APQ9BWU0 796 aaKnown RBP16.03■□□□□ 0.16
AC012560.1-202ENST00000421324 ABCC9O60706 1549 aa15.99■□□□□ 0.15
AC012560.1-202ENST00000421324 C1QBPQ07021 282 aaKnown RBP15.96■□□□□ 0.15
AC012560.1-202ENST00000421324 CACNB1Q02641 598 aaPredicted RBP15.92■□□□□ 0.14
AC012560.1-202ENST00000421324 U3KPZ7 1027 aaPredicted RBP15.91■□□□□ 0.14
AC012560.1-202ENST00000421324 FOXD4L1Q9NU39 408 aa15.64■□□□□ 0.09
AC012560.1-202ENST00000421324 ZBTB22O15209 634 aa15.62■□□□□ 0.09
AC012560.1-202ENST00000421324 MYCNP04198 464 aaPredicted RBP15.57■□□□□ 0.08
AC012560.1-202ENST00000421324 SPINK5Q9NQ38 1064 aaPredicted RBP15.54■□□□□ 0.08
AC012560.1-202ENST00000421324 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.53■□□□□ 0.08
AC012560.1-202ENST00000421324 HNRNPUL2Q1KMD3 747 aaKnown RBP15.53■□□□□ 0.08
AC012560.1-202ENST00000421324 SAMD1Q6SPF0 538 aaPredicted RBP15.48■□□□□ 0.07
AC012560.1-202ENST00000421324 DCAF8L2P0C7V8 631 aa15.43■□□□□ 0.06
AC012560.1-202ENST00000421324 CAPN15O75808 1086 aa15.42■□□□□ 0.06
AC012560.1-202ENST00000421324 APLP2Q06481 763 aa15.41■□□□□ 0.06
AC012560.1-202ENST00000421324 RB1CC1Q8TDY2 1594 aa15.32■□□□□ 0.04
AC012560.1-202ENST00000421324 DSG3P32926 999 aa15.31■□□□□ 0.04
AC012560.1-202ENST00000421324 NACADO15069 1562 aa15.29■□□□□ 0.04
AC012560.1-202ENST00000421324 TRHP20396 242 aaPredicted RBP15.29■□□□□ 0.04
AC012560.1-202ENST00000421324 ZNF219Q9P2Y4 722 aaPredicted RBP15.29■□□□□ 0.04
AC012560.1-202ENST00000421324 CSRNP3Q8WYN3 585 aa15.26■□□□□ 0.03
AC012560.1-202ENST00000421324 ATF5Q9Y2D1 282 aaPredicted RBP15.24■□□□□ 0.03
AC012560.1-202ENST00000421324 EHMT2Q96KQ7 1210 aa15.2■□□□□ 0.02
AC012560.1-202ENST00000421324 MYO15BQ96JP2 1530 aa15.16■□□□□ 0.02
AC012560.1-202ENST00000421324 ATXN8OSP0DMR3 200 aa15.15■□□□□ 0.02
AC012560.1-202ENST00000421324 ZCCHC6Q5VYS8 1495 aaKnown RBP15.14■□□□□ 0.01
AC012560.1-202ENST00000421324 ABCB7O75027 752 aa15.12■□□□□ 0.01
AC012560.1-202ENST00000421324 DCAF1Q9Y4B6 1507 aa15.07■□□□□ 0
AC012560.1-202ENST00000421324 POLA2Q14181 598 aa15□□□□□ -0.01
AC012560.1-202ENST00000421324 PABPN1Q86U42 306 aaKnown RBP eCLIP14.99□□□□□ -0.01
AC012560.1-202ENST00000421324 UNC13AQ9UPW8 1703 aa14.87□□□□□ -0.03
AC012560.1-202ENST00000421324 BICRAQ9NZM4 1560 aa14.81□□□□□ -0.04
AC012560.1-202ENST00000421324 SCRIBQ14160 1630 aa14.79□□□□□ -0.04
AC012560.1-202ENST00000421324 ZBTB12Q9Y330 459 aaPredicted RBP14.7□□□□□ -0.06
AC012560.1-202ENST00000421324 SHROOM4Q9ULL8 1493 aa14.69□□□□□ -0.06
AC012560.1-202ENST00000421324 MKRN4PQ13434 485 aaPredicted RBP14.56□□□□□ -0.08
AC012560.1-202ENST00000421324 RBM42Q9BTD8 480 aaKnown RBP14.54□□□□□ -0.08
AC012560.1-202ENST00000421324 FBLN2P98095 1184 aa14.51□□□□□ -0.09
AC012560.1-202ENST00000421324 OSCARQ8IYS5 282 aa14.5□□□□□ -0.09
AC012560.1-202ENST00000421324 EIF4G1Q04637 1599 aaKnown RBP14.46□□□□□ -0.09
AC012560.1-202ENST00000421324 CC2D2AQ9P2K1 1620 aa14.42□□□□□ -0.1
AC012560.1-202ENST00000421324 CECR2Q9BXF3 1484 aa14.38□□□□□ -0.11
AC012560.1-202ENST00000421324 AKT1S1Q96B36 256 aa14.34□□□□□ -0.11
AC012560.1-202ENST00000421324 SPDYE2BA6NHP3 402 aa14.32□□□□□ -0.12
AC012560.1-202ENST00000421324 SPDYE6P0CI01 402 aa14.32□□□□□ -0.12
AC012560.1-202ENST00000421324 SPDYE2Q495Y8 402 aa14.32□□□□□ -0.12
AC012560.1-202ENST00000421324 SSUH2Q9Y2M2 353 aa14.22□□□□□ -0.13
AC012560.1-202ENST00000421324 REM2Q8IYK8 340 aaPredicted RBP14.2□□□□□ -0.14
AC012560.1-202ENST00000421324 ZNF692Q9BU19 519 aaPredicted RBP14.19□□□□□ -0.14
AC012560.1-202ENST00000421324 BAZ1AQ9NRL2 1556 aaPredicted RBP14.14□□□□□ -0.15
AC012560.1-202ENST00000421324 NCAPD3P42695 1498 aa14.13□□□□□ -0.15
AC012560.1-202ENST00000421324 SMARCA4P51532 1647 aa14.13□□□□□ -0.15
AC012560.1-202ENST00000421324 ATAD2BQ9ULI0 1458 aa14.12□□□□□ -0.15
AC012560.1-202ENST00000421324 SMARCA2P51531 1590 aa14.09□□□□□ -0.15
AC012560.1-202ENST00000421324 CHRDL2Q6WN34 429 aa14.07□□□□□ -0.16
AC012560.1-202ENST00000421324 MROH2BQ7Z745 1585 aa14.05□□□□□ -0.16
AC012560.1-202ENST00000421324 PITPNM1O00562 1244 aa14.04□□□□□ -0.16
AC012560.1-202ENST00000421324 SPDYE4A6NLX3 237 aa14.02□□□□□ -0.17
AC012560.1-202ENST00000421324 HMGXB3Q12766 1538 aa14□□□□□ -0.17
AC012560.1-202ENST00000421324 BAZ1BQ9UIG0 1483 aaKnown RBP14□□□□□ -0.17
AC012560.1-202ENST00000421324 PEG3Q9GZU2 1588 aa13.98□□□□□ -0.17
AC012560.1-202ENST00000421324 POTEHQ6S545 545 aa13.97□□□□□ -0.17
AC012560.1-202ENST00000421324 SPDYE1Q8NFV5 336 aaPredicted RBP13.95□□□□□ -0.18
AC012560.1-202ENST00000421324 RSF1Q96T23 1441 aaPredicted RBP13.89□□□□□ -0.19
AC012560.1-202ENST00000421324 FXR2P51116 673 aaKnown RBP eCLIP13.87□□□□□ -0.19
AC012560.1-202ENST00000421324 WIZO95785 1651 aa13.87□□□□□ -0.19
AC012560.1-202ENST00000421324 CLEC11AQ9Y240 323 aa13.86□□□□□ -0.19
AC012560.1-202ENST00000421324 PROM2Q8N271 834 aa13.85□□□□□ -0.19
AC012560.1-202ENST00000421324 PIP4P2Q8N4L2 257 aa13.85□□□□□ -0.19
AC012560.1-202ENST00000421324 ERCC6Q03468 1493 aa13.81□□□□□ -0.2
AC012560.1-202ENST00000421324 NESP48681 1621 aa13.79□□□□□ -0.2
AC012560.1-202ENST00000421324 FKBP8Q14318 412 aa13.75□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms