RNA–Protein interactions for RNA: ENST00000420121.5

SSBP3-206, Transcript of single stranded DNA binding protein 3, humanhuman

TSL 3

Gene SSBP3, Length 593 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP3-206ENST00000420121 NISCHQ9Y2I1 1504 aa27.64■■■□□ 2.02
SSBP3-206ENST00000420121 CCDC180Q9P1Z9 1646 aa24.76■■□□□ 1.55
SSBP3-206ENST00000420121 ABCC9O60706 1549 aa24.46■■□□□ 1.51
SSBP3-206ENST00000420121 RB1CC1Q8TDY2 1594 aa23.4■■□□□ 1.34
SSBP3-206ENST00000420121 NACADO15069 1562 aa23.3■■□□□ 1.32
SSBP3-206ENST00000420121 AEBP2Q6ZN18 517 aaPredicted RBP23.19■■□□□ 1.3
SSBP3-206ENST00000420121 MYO15BQ96JP2 1530 aa23.08■■□□□ 1.28
SSBP3-206ENST00000420121 DCAF8L2P0C7V8 631 aa23.06■■□□□ 1.28
SSBP3-206ENST00000420121 UNC13AQ9UPW8 1703 aa23.02■■□□□ 1.28
SSBP3-206ENST00000420121 ZCCHC6Q5VYS8 1495 aaKnown RBP22.98■■□□□ 1.27
SSBP3-206ENST00000420121 DCAF1Q9Y4B6 1507 aa22.87■■□□□ 1.25
SSBP3-206ENST00000420121 BICRAQ9NZM4 1560 aa22.8■■□□□ 1.24
SSBP3-206ENST00000420121 DNAJC5BQ9UF47 199 aa22.79■■□□□ 1.24
SSBP3-206ENST00000420121 PABPN1Q86U42 306 aaKnown RBP eCLIP22.77■■□□□ 1.24
SSBP3-206ENST00000420121 SCRIBQ14160 1630 aa22.53■■□□□ 1.2
SSBP3-206ENST00000420121 SHROOM4Q9ULL8 1493 aa22.44■■□□□ 1.18
SSBP3-206ENST00000420121 CC2D2AQ9P2K1 1620 aa22.17■■□□□ 1.14
SSBP3-206ENST00000420121 EIF4G1Q04637 1599 aaKnown RBP22.16■■□□□ 1.14
SSBP3-206ENST00000420121 CHIC1Q5VXU3 224 aa22.08■■□□□ 1.13
SSBP3-206ENST00000420121 CECR2Q9BXF3 1484 aa22.01■■□□□ 1.11
SSBP3-206ENST00000420121 SMARCA4P51532 1647 aa21.55■■□□□ 1.04
SSBP3-206ENST00000420121 NCAPD3P42695 1498 aa21.51■■□□□ 1.03
SSBP3-206ENST00000420121 ATAD2BQ9ULI0 1458 aa21.47■■□□□ 1.03
SSBP3-206ENST00000420121 BAZ1AQ9NRL2 1556 aaPredicted RBP21.42■■□□□ 1.02
SSBP3-206ENST00000420121 SMARCA2P51531 1590 aa21.41■■□□□ 1.02
SSBP3-206ENST00000420121 HMGXB3Q12766 1538 aa21.39■■□□□ 1.02
SSBP3-206ENST00000420121 PEG3Q9GZU2 1588 aa21.36■■□□□ 1.01
SSBP3-206ENST00000420121 MROH2BQ7Z745 1585 aa21.31■■□□□ 1
SSBP3-206ENST00000420121 BAZ1BQ9UIG0 1483 aaKnown RBP21.25■□□□□ 0.99
SSBP3-206ENST00000420121 NESP48681 1621 aa21.12■□□□□ 0.97
SSBP3-206ENST00000420121 WIZO95785 1651 aa21.09■□□□□ 0.97
SSBP3-206ENST00000420121 ERCC6Q03468 1493 aa21.05■□□□□ 0.96
SSBP3-206ENST00000420121 CUX2O14529 1486 aa21.01■□□□□ 0.95
SSBP3-206ENST00000420121 LAMC3Q9Y6N6 1575 aa21■□□□□ 0.95
SSBP3-206ENST00000420121 RSF1Q96T23 1441 aaPredicted RBP20.92■□□□□ 0.94
SSBP3-206ENST00000420121 KIF21AQ7Z4S6 1674 aa20.91■□□□□ 0.94
SSBP3-206ENST00000420121 THOC2Q8NI27 1593 aaKnown RBP20.91■□□□□ 0.94
SSBP3-206ENST00000420121 CADPSQ9ULU8 1353 aa20.83■□□□□ 0.92
SSBP3-206ENST00000420121 TOP2AP11388 1531 aaKnown RBP20.81■□□□□ 0.92
SSBP3-206ENST00000420121 PDS5BQ9NTI5 1447 aa20.79■□□□□ 0.92
SSBP3-206ENST00000420121 DNAJC5Q9H3Z4 198 aa20.71■□□□□ 0.91
SSBP3-206ENST00000420121 CFTRP13569 1480 aa20.68■□□□□ 0.9
SSBP3-206ENST00000420121 MRC2Q9UBG0 1479 aa20.65■□□□□ 0.9
SSBP3-206ENST00000420121 WDR62O43379 1518 aa20.63■□□□□ 0.89
SSBP3-206ENST00000420121 FANCD2Q9BXW9 1451 aa20.6■□□□□ 0.89
SSBP3-206ENST00000420121 CEP164Q9UPV0 1460 aa20.6■□□□□ 0.89
SSBP3-206ENST00000420121 PRDM2Q13029 1718 aa20.58■□□□□ 0.89
SSBP3-206ENST00000420121 CCDC88BA6NC98 1476 aa20.56■□□□□ 0.88
SSBP3-206ENST00000420121 URB2Q14146 1524 aaKnown RBP20.47■□□□□ 0.87
SSBP3-206ENST00000420121 TOPBP1Q92547 1522 aa20.26■□□□□ 0.83
SSBP3-206ENST00000420121 DNMBPQ6XZF7 1577 aa20.22■□□□□ 0.83
SSBP3-206ENST00000420121 ABCC8Q09428 1581 aa20.18■□□□□ 0.82
SSBP3-206ENST00000420121 IFT140Q96RY7 1462 aa20.18■□□□□ 0.82
SSBP3-206ENST00000420121 ZNF608Q9ULD9 1512 aaPredicted RBP20.17■□□□□ 0.82
SSBP3-206ENST00000420121 TARBP1Q13395 1621 aaKnown RBP20.13■□□□□ 0.81
SSBP3-206ENST00000420121 EIF4G3O43432 1585 aaKnown RBP20.09■□□□□ 0.81
SSBP3-206ENST00000420121 POLA1P09884 1462 aaPredicted RBP20.07■□□□□ 0.8
SSBP3-206ENST00000420121 SUPT5HO00267 1087 aaKnown RBP20.04■□□□□ 0.8
SSBP3-206ENST00000420121 CUX1P39880 1505 aa20.02■□□□□ 0.79
SSBP3-206ENST00000420121 OSCARQ8IYS5 282 aa20■□□□□ 0.79
SSBP3-206ENST00000420121 AQRO60306 1485 aaKnown RBP eCLIP19.98■□□□□ 0.791e-7■■■■□ 23.2
SSBP3-206ENST00000420121 RAD54L2Q9Y4B4 1467 aa19.98■□□□□ 0.79
SSBP3-206ENST00000420121 FGD5Q6ZNL6 1462 aa19.97■□□□□ 0.79
SSBP3-206ENST00000420121 CHD1O14646 1710 aa19.93■□□□□ 0.78
SSBP3-206ENST00000420121 SOGA1O94964 1423 aa19.93■□□□□ 0.78
SSBP3-206ENST00000420121 WDR97A6NE52 1622 aa19.91■□□□□ 0.78
SSBP3-206ENST00000420121 TDRD9Q8NDG6 1382 aaKnown RBP19.86■□□□□ 0.77
SSBP3-206ENST00000420121 RIMBP3CA6NJZ7 1639 aa19.84■□□□□ 0.77
SSBP3-206ENST00000420121 RIMBP3BA6NNM3 1639 aa19.84■□□□□ 0.77
SSBP3-206ENST00000420121 RIMBP3Q9UFD9 1639 aa19.84■□□□□ 0.77
SSBP3-206ENST00000420121 TRIM41Q8WV44 630 aa19.83■□□□□ 0.77
SSBP3-206ENST00000420121 SENP3Q9H4L4 574 aaPredicted RBP19.81■□□□□ 0.76
SSBP3-206ENST00000420121 BIVM-ERCC5R4GMW8 1640 aa19.79■□□□□ 0.76
SSBP3-206ENST00000420121 SNAPC4Q5SXM2 1469 aa19.79■□□□□ 0.76
SSBP3-206ENST00000420121 PBRM1Q86U86 1689 aa19.78■□□□□ 0.76
SSBP3-206ENST00000420121 ARHGEF11O15085 1522 aa19.77■□□□□ 0.76
SSBP3-206ENST00000420121 ABCA10Q8WWZ4 1543 aa19.76■□□□□ 0.75
SSBP3-206ENST00000420121 ABCA5Q8WWZ7 1642 aa19.76■□□□□ 0.75
SSBP3-206ENST00000420121 TOP2BQ02880 1626 aa19.76■□□□□ 0.75
SSBP3-206ENST00000420121 SYNJ1O43426 1573 aa19.75■□□□□ 0.75
SSBP3-206ENST00000420121 GRIN2BQ13224 1484 aa19.75■□□□□ 0.75
SSBP3-206ENST00000420121 MAGI1Q96QZ7 1491 aaPredicted RBP19.74■□□□□ 0.75
SSBP3-206ENST00000420121 GAPVD1Q14C86 1478 aa19.72■□□□□ 0.75
SSBP3-206ENST00000420121 WRNQ14191 1432 aaPredicted RBP eCLIP19.7■□□□□ 0.74
SSBP3-206ENST00000420121 FBLN2P98095 1184 aa19.69■□□□□ 0.74
SSBP3-206ENST00000420121 CLASP1Q7Z460 1538 aa19.69■□□□□ 0.74
SSBP3-206ENST00000420121 SYNJ2O15056 1496 aa19.67■□□□□ 0.74
SSBP3-206ENST00000420121 ARAP1Q96P48 1450 aa19.61■□□□□ 0.73
SSBP3-206ENST00000420121 CHMP7Q8WUX9 453 aaPredicted RBP19.6■□□□□ 0.73
SSBP3-206ENST00000420121 ADAMTS12P58397 1594 aa19.57■□□□□ 0.72
SSBP3-206ENST00000420121 PHF23Q9BUL5 403 aaPredicted RBP19.54■□□□□ 0.72
SSBP3-206ENST00000420121 CYB5RLQ6IPT4 315 aa19.52■□□□□ 0.72
SSBP3-206ENST00000420121 GRIN2AQ12879 1464 aa19.52■□□□□ 0.72
SSBP3-206ENST00000420121 ERICH3Q5RHP9 1530 aa19.51■□□□□ 0.71
SSBP3-206ENST00000420121 CEP170Q5SW79 1584 aa19.49■□□□□ 0.71
SSBP3-206ENST00000420121 FHAD1B1AJZ9 1412 aa19.46■□□□□ 0.71
SSBP3-206ENST00000420121 NUP160Q12769 1436 aa19.46■□□□□ 0.71
SSBP3-206ENST00000420121 ERCC6L2Q5T890 1561 aa19.4■□□□□ 0.7
SSBP3-206ENST00000420121 SHROOM2Q13796 1616 aa19.4■□□□□ 0.7
SSBP3-206ENST00000420121 RUSC2Q8N2Y8 1516 aa19.3■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 8.8 ms