RNA–Protein interactions for RNA: ENST00000419493.2

CTSA-205, Transcript of cathepsin A, humanhuman

TSL 2

Gene CTSA, Length 606 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTSA-205ENST00000419493 NISCHQ9Y2I1 1504 aa23.47■■□□□ 1.35
CTSA-205ENST00000419493 CCDC180Q9P1Z9 1646 aa20.88■□□□□ 0.93
CTSA-205ENST00000419493 ABCC9O60706 1549 aa20.71■□□□□ 0.91
CTSA-205ENST00000419493 DCAF8L2P0C7V8 631 aa19.92■□□□□ 0.78
CTSA-205ENST00000419493 RB1CC1Q8TDY2 1594 aa19.79■□□□□ 0.76
CTSA-205ENST00000419493 NACADO15069 1562 aa19.71■□□□□ 0.75
CTSA-205ENST00000419493 ZCCHC6Q5VYS8 1495 aaKnown RBP19.49■□□□□ 0.71
CTSA-205ENST00000419493 MYO15BQ96JP2 1530 aa19.48■□□□□ 0.71
CTSA-205ENST00000419493 PABPN1Q86U42 306 aaKnown RBP eCLIP19.38■□□□□ 0.695e-6■■■□□ 17.2
CTSA-205ENST00000419493 DCAF1Q9Y4B6 1507 aa19.35■□□□□ 0.69
CTSA-205ENST00000419493 UNC13AQ9UPW8 1703 aa19.28■□□□□ 0.68
CTSA-205ENST00000419493 BICRAQ9NZM4 1560 aa19.15■□□□□ 0.66
CTSA-205ENST00000419493 DNAJC5BQ9UF47 199 aa19.14■□□□□ 0.65
CTSA-205ENST00000419493 SCRIBQ14160 1630 aa19.12■□□□□ 0.65
CTSA-205ENST00000419493 SHROOM4Q9ULL8 1493 aa18.9■□□□□ 0.62
CTSA-205ENST00000419493 EIF4G1Q04637 1599 aaKnown RBP18.68■□□□□ 0.58
CTSA-205ENST00000419493 CC2D2AQ9P2K1 1620 aa18.67■□□□□ 0.58
CTSA-205ENST00000419493 CECR2Q9BXF3 1484 aa18.6■□□□□ 0.57
CTSA-205ENST00000419493 SMARCA4P51532 1647 aa18.23■□□□□ 0.51
CTSA-205ENST00000419493 BAZ1AQ9NRL2 1556 aaPredicted RBP18.21■□□□□ 0.51
CTSA-205ENST00000419493 NCAPD3P42695 1498 aa18.2■□□□□ 0.5
CTSA-205ENST00000419493 ATAD2BQ9ULI0 1458 aa18.2■□□□□ 0.5
CTSA-205ENST00000419493 SMARCA2P51531 1590 aa18.17■□□□□ 0.5
CTSA-205ENST00000419493 MROH2BQ7Z745 1585 aa18.1■□□□□ 0.49
CTSA-205ENST00000419493 BAZ1BQ9UIG0 1483 aaKnown RBP18.07■□□□□ 0.48
CTSA-205ENST00000419493 HMGXB3Q12766 1538 aa18.06■□□□□ 0.48
CTSA-205ENST00000419493 PEG3Q9GZU2 1588 aa18.01■□□□□ 0.47
CTSA-205ENST00000419493 WIZO95785 1651 aa17.91■□□□□ 0.46
CTSA-205ENST00000419493 ERCC6Q03468 1493 aa17.88■□□□□ 0.45
CTSA-205ENST00000419493 NESP48681 1621 aa17.85■□□□□ 0.45
CTSA-205ENST00000419493 RSF1Q96T23 1441 aaPredicted RBP17.85■□□□□ 0.45
CTSA-205ENST00000419493 LAMC3Q9Y6N6 1575 aa17.74■□□□□ 0.43
CTSA-205ENST00000419493 CADPSQ9ULU8 1353 aa17.7■□□□□ 0.42
CTSA-205ENST00000419493 TOP2AP11388 1531 aaKnown RBP17.68■□□□□ 0.42
CTSA-205ENST00000419493 PDS5BQ9NTI5 1447 aa17.68■□□□□ 0.42
CTSA-205ENST00000419493 CUX2O14529 1486 aa17.66■□□□□ 0.42
CTSA-205ENST00000419493 KIF21AQ7Z4S6 1674 aa17.59■□□□□ 0.41
CTSA-205ENST00000419493 THOC2Q8NI27 1593 aaKnown RBP17.53■□□□□ 0.4
CTSA-205ENST00000419493 CFTRP13569 1480 aa17.52■□□□□ 0.4
CTSA-205ENST00000419493 CCDC88BA6NC98 1476 aa17.51■□□□□ 0.39
CTSA-205ENST00000419493 FANCD2Q9BXW9 1451 aa17.5■□□□□ 0.39
CTSA-205ENST00000419493 CEP164Q9UPV0 1460 aa17.49■□□□□ 0.39
CTSA-205ENST00000419493 MRC2Q9UBG0 1479 aa17.48■□□□□ 0.39
CTSA-205ENST00000419493 SUPT5HO00267 1087 aaKnown RBP17.45■□□□□ 0.38
CTSA-205ENST00000419493 WDR62O43379 1518 aa17.38■□□□□ 0.37
CTSA-205ENST00000419493 DNAJC5Q9H3Z4 198 aa17.37■□□□□ 0.37
CTSA-205ENST00000419493 PRDM2Q13029 1718 aa17.33■□□□□ 0.37
CTSA-205ENST00000419493 URB2Q14146 1524 aaKnown RBP17.3■□□□□ 0.36
CTSA-205ENST00000419493 TOPBP1Q92547 1522 aa17.18■□□□□ 0.34
CTSA-205ENST00000419493 ABCC8Q09428 1581 aa17.18■□□□□ 0.34
CTSA-205ENST00000419493 DNMBPQ6XZF7 1577 aa17.13■□□□□ 0.33
CTSA-205ENST00000419493 IFT140Q96RY7 1462 aa17.11■□□□□ 0.33
CTSA-205ENST00000419493 ZNF608Q9ULD9 1512 aaPredicted RBP17.06■□□□□ 0.32
CTSA-205ENST00000419493 POLA1P09884 1462 aaPredicted RBP17.02■□□□□ 0.32
CTSA-205ENST00000419493 OSCARQ8IYS5 282 aa17.02■□□□□ 0.32
CTSA-205ENST00000419493 SOGA1O94964 1423 aa17.01■□□□□ 0.31
CTSA-205ENST00000419493 AQRO60306 1485 aaKnown RBP eCLIP16.99■□□□□ 0.311e-8■■■■□ 19.3
CTSA-205ENST00000419493 RAD54L2Q9Y4B4 1467 aa16.99■□□□□ 0.31
CTSA-205ENST00000419493 CUX1P39880 1505 aa16.98■□□□□ 0.31
CTSA-205ENST00000419493 FGD5Q6ZNL6 1462 aa16.98■□□□□ 0.31
CTSA-205ENST00000419493 TARBP1Q13395 1621 aaKnown RBP16.96■□□□□ 0.3
CTSA-205ENST00000419493 EIF4G3O43432 1585 aaKnown RBP16.95■□□□□ 0.3
CTSA-205ENST00000419493 TDRD9Q8NDG6 1382 aaKnown RBP16.94■□□□□ 0.3
CTSA-205ENST00000419493 FBLN2P98095 1184 aa16.93■□□□□ 0.3
CTSA-205ENST00000419493 WRNQ14191 1432 aaPredicted RBP eCLIP16.86■□□□□ 0.29
CTSA-205ENST00000419493 TRIM41Q8WV44 630 aa16.84■□□□□ 0.29
CTSA-205ENST00000419493 CHMP7Q8WUX9 453 aaPredicted RBP16.81■□□□□ 0.28
CTSA-205ENST00000419493 WDR97A6NE52 1622 aa16.79■□□□□ 0.28
CTSA-205ENST00000419493 GRIN2BQ13224 1484 aa16.79■□□□□ 0.28
CTSA-205ENST00000419493 SNAPC4Q5SXM2 1469 aa16.79■□□□□ 0.28
CTSA-205ENST00000419493 TOP2BQ02880 1626 aa16.78■□□□□ 0.28
CTSA-205ENST00000419493 GAPVD1Q14C86 1478 aa16.78■□□□□ 0.28
CTSA-205ENST00000419493 SYNJ1O43426 1573 aa16.77■□□□□ 0.28
CTSA-205ENST00000419493 ABCA10Q8WWZ4 1543 aa16.77■□□□□ 0.28
CTSA-205ENST00000419493 CHD1O14646 1710 aa16.77■□□□□ 0.28
CTSA-205ENST00000419493 BIVM-ERCC5R4GMW8 1640 aa16.76■□□□□ 0.27
CTSA-205ENST00000419493 MAGI1Q96QZ7 1491 aaPredicted RBP16.73■□□□□ 0.27
CTSA-205ENST00000419493 PBRM1Q86U86 1689 aa16.7■□□□□ 0.26
CTSA-205ENST00000419493 ABCA5Q8WWZ7 1642 aa16.69■□□□□ 0.26
CTSA-205ENST00000419493 SYNJ2O15056 1496 aa16.68■□□□□ 0.26
CTSA-205ENST00000419493 RIMBP3CA6NJZ7 1639 aa16.66■□□□□ 0.26
CTSA-205ENST00000419493 RIMBP3BA6NNM3 1639 aa16.66■□□□□ 0.26
CTSA-205ENST00000419493 RIMBP3Q9UFD9 1639 aa16.66■□□□□ 0.26
CTSA-205ENST00000419493 ARHGEF11O15085 1522 aa16.65■□□□□ 0.26
CTSA-205ENST00000419493 CYB5RLQ6IPT4 315 aa16.63■□□□□ 0.25
CTSA-205ENST00000419493 ERICH3Q5RHP9 1530 aa16.57■□□□□ 0.24
CTSA-205ENST00000419493 FHAD1B1AJZ9 1412 aa16.57■□□□□ 0.24
CTSA-205ENST00000419493 GRIN2AQ12879 1464 aa16.56■□□□□ 0.24
CTSA-205ENST00000419493 ADAMTS12P58397 1594 aa16.55■□□□□ 0.24
CTSA-205ENST00000419493 CLASP1Q7Z460 1538 aa16.55■□□□□ 0.24
CTSA-205ENST00000419493 KIF27Q86VH2 1401 aa16.53■□□□□ 0.24
CTSA-205ENST00000419493 ARAP1Q96P48 1450 aa16.49■□□□□ 0.23
CTSA-205ENST00000419493 IGF1RP08069 1367 aa16.48■□□□□ 0.23
CTSA-205ENST00000419493 CEP170Q5SW79 1584 aa16.47■□□□□ 0.23
CTSA-205ENST00000419493 NUP160Q12769 1436 aa16.46■□□□□ 0.23
CTSA-205ENST00000419493 CARMIL1Q5VZK9 1371 aa16.4■□□□□ 0.22
CTSA-205ENST00000419493 JPH4Q96JJ6 628 aa16.4■□□□□ 0.22
CTSA-205ENST00000419493 TRHP20396 242 aaPredicted RBP16.39■□□□□ 0.21
CTSA-205ENST00000419493 CUL7Q14999 1698 aa16.38■□□□□ 0.21
CTSA-205ENST00000419493 PRG4Q92954 1404 aaPredicted RBP16.36■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms