RNA–Protein interactions for RNA: ENST00000416957.5

FNDC3B-203, Transcript of fibronectin type III domain containing 3B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene FNDC3B, Length 3,684 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FNDC3B-203ENST00000416957 UTP3Q9NQZ2 479 aaKnown RBP eCLIP10.54□□□□□ -0.721e-6■■■■■ 169.3
FNDC3B-203ENST00000416957 SF3B1O75533 1304 aaKnown RBP eCLIP8.01□□□□□ -1.134e-6■■■■■ 90.5
FNDC3B-203ENST00000416957 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP8.68□□□□□ -1.025e-6■■■■■ 81.8
FNDC3B-203ENST00000416957 TIA1P31483 386 aaKnown RBP eCLIP7.33□□□□□ -1.243e-10■■■■■ 77.2
FNDC3B-203ENST00000416957 DDX59Q5T1V6 619 aaKnown RBP eCLIP8.41□□□□□ -1.063e-7■■■■■ 57.8
FNDC3B-203ENST00000416957 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP9.52□□□□□ -0.897e-7■■■■■ 54.8
FNDC3B-203ENST00000416957 XRN2Q9H0D6 950 aaKnown RBP eCLIP8.73□□□□□ -1.014e-12■■■■■ 48.5
FNDC3B-203ENST00000416957 PCBP2Q15366 365 aaKnown RBP eCLIP8.05□□□□□ -1.121e-8■■■■■ 40.2
FNDC3B-203ENST00000416957 GPKOWQ92917 476 aaPredicted RBP eCLIP8.51□□□□□ -1.058e-7■■■■■ 38.1
FNDC3B-203ENST00000416957 ZRANB2O95218 330 aaKnown RBP eCLIP10.2□□□□□ -0.787e-6■■■■■ 37.3
FNDC3B-203ENST00000416957 SRSF7Q16629 238 aaKnown RBP eCLIP7.65□□□□□ -1.182e-6■■■■■ 36.7
FNDC3B-203ENST00000416957 NKRFO15226 690 aaKnown RBP eCLIP8.48□□□□□ -1.053e-8■■■■■ 35
FNDC3B-203ENST00000416957 LSM11P83369 360 aaKnown RBP eCLIP8.01□□□□□ -1.132e-12■■■■■ 35
FNDC3B-203ENST00000416957 SF3B4Q15427 424 aaKnown RBP eCLIP8.97□□□□□ -0.976e-8■■■■■ 34.1
FNDC3B-203ENST00000416957 EIF4G2P78344 907 aaKnown RBP eCLIP10.48□□□□□ -0.735e-11■■■■■ 32.1
FNDC3B-203ENST00000416957 CSTF2P33240 577 aaKnown RBP eCLIP8.93□□□□□ -0.982e-7■■■■■ 31.3
FNDC3B-203ENST00000416957 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP6.01□□□□□ -1.457e-8■■■■■ 31.3
FNDC3B-203ENST00000416957 PCBP1Q15365 356 aaKnown RBP eCLIP8.48□□□□□ -1.055e-7■■■■■ 30
FNDC3B-203ENST00000416957 SRSF9Q13242 221 aaKnown RBP eCLIP6.82□□□□□ -1.326e-8■■■■■ 27.5
FNDC3B-203ENST00000416957 TBRG4Q969Z0 631 aaKnown RBP eCLIP8.15□□□□□ -1.13e-6■■■■□ 26.3
FNDC3B-203ENST00000416957 GTF2F1P35269 517 aaKnown RBP eCLIP9.89□□□□□ -0.833e-7■■■■□ 26.1
FNDC3B-203ENST00000416957 DKC1O60832 514 aaKnown RBP eCLIP8.72□□□□□ -1.012e-18■■■■□ 24.6
FNDC3B-203ENST00000416957 POLR2GP62487 172 aaKnown RBP eCLIP9.04□□□□□ -0.962e-6■■■■□ 23.8
FNDC3B-203ENST00000416957 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP9.14□□□□□ -0.954e-7■■■■□ 22.7
FNDC3B-203ENST00000416957 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP7.98□□□□□ -1.136e-8■■■■□ 22.6
FNDC3B-203ENST00000416957 TRA2AQ13595 282 aaKnown RBP eCLIP8.15□□□□□ -1.12e-11■■■■□ 22.5
FNDC3B-203ENST00000416957 AQRO60306 1485 aaKnown RBP eCLIP12.5□□□□□ -0.413e-7■■■■□ 22.4
FNDC3B-203ENST00000416957 TIAL1Q01085 375 aaKnown RBP eCLIP7.28□□□□□ -1.244e-7■■■■□ 22.3
FNDC3B-203ENST00000416957 XRCC6P12956 609 aaKnown RBP eCLIP10.27□□□□□ -0.772e-6■■■■□ 21.5
FNDC3B-203ENST00000416957 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP8.3□□□□□ -1.083e-8■■■■□ 20.1
FNDC3B-203ENST00000416957 PTBP1P26599 531 aaKnown RBP eCLIP8.6□□□□□ -1.033e-8■■■■□ 20.1
FNDC3B-203ENST00000416957 HNRNPKP61978 463 aaKnown RBP eCLIP8.52□□□□□ -1.049e-7■■■□□ 19.1
FNDC3B-203ENST00000416957 ILF3Q12906 894 aaKnown RBP eCLIP8.37□□□□□ -1.074e-7■■■□□ 18.7
FNDC3B-203ENST00000416957 HNRNPLP14866 589 aaKnown RBP eCLIP8.43□□□□□ -1.068e-9■■■□□ 18.6
FNDC3B-203ENST00000416957 TARDBPQ13148 414 aaKnown RBP eCLIP8.49□□□□□ -1.052e-6■■■□□ 18.2
FNDC3B-203ENST00000416957 HNRNPMP52272 730 aaKnown RBP eCLIP11.31□□□□□ -0.62e-7■■■□□ 18.2
FNDC3B-203ENST00000416957 SDAD1Q9NVU7 687 aaKnown RBP eCLIP9.03□□□□□ -0.967e-7■■■□□ 16.9
FNDC3B-203ENST00000416957 BCCIPQ9P287 314 aaKnown RBP eCLIP11.89□□□□□ -0.513e-6■■■□□ 16.9
FNDC3B-203ENST00000416957 WDR43Q15061 677 aaKnown RBP eCLIP9.91□□□□□ -0.825e-7■■■□□ 16.8
FNDC3B-203ENST00000416957 SMNDC1O75940 238 aaKnown RBP eCLIP9.27□□□□□ -0.931e-9■■■□□ 16.5
FNDC3B-203ENST00000416957 MATR3P43243 847 aaKnown RBP eCLIP9.64□□□□□ -0.873e-8■■■□□ 15.7
FNDC3B-203ENST00000416957 AGGF1Q8N302 714 aaeCLIP8.48□□□□□ -1.052e-11■■■□□ 15.7
FNDC3B-203ENST00000416957 SF3A3Q12874 501 aaKnown RBP eCLIP8.5□□□□□ -1.058e-7■■■□□ 15.4
FNDC3B-203ENST00000416957 HNRNPCP07910 306 aaKnown RBP eCLIP9.31□□□□□ -0.926e-7■■■□□ 15.2
FNDC3B-203ENST00000416957 DDX24Q9GZR7 859 aaKnown RBP eCLIP9.21□□□□□ -0.933e-7■■■□□ 15.1
FNDC3B-203ENST00000416957 U2AF2P26368 475 aaKnown RBP eCLIP9.97□□□□□ -0.818e-8■■■□□ 14.8
FNDC3B-203ENST00000416957 QKIQ96PU8 341 aaKnown RBP eCLIP8.34□□□□□ -1.074e-7■■■□□ 14.8
FNDC3B-203ENST00000416957 KHSRPQ92945 711 aaKnown RBP eCLIP8.33□□□□□ -1.084e-7■■□□□ 14.5
FNDC3B-203ENST00000416957 ZNF622Q969S3 477 aaKnown RBP eCLIP11.15□□□□□ -0.622e-6■■□□□ 14.2
FNDC3B-203ENST00000416957 IGF2BP3O00425 579 aaKnown RBP eCLIP9.14□□□□□ -0.957e-10■■□□□ 14.1
FNDC3B-203ENST00000416957 NCBP2P52298 156 aaKnown RBP eCLIP6.94□□□□□ -1.32e-28■■□□□ 14
FNDC3B-203ENST00000416957 PPIGQ13427 754 aaKnown RBP eCLIP8.19□□□□□ -1.13e-9■■□□□ 13.7
FNDC3B-203ENST00000416957 U2AF1Q01081 240 aaKnown RBP eCLIP10.13□□□□□ -0.794e-10■■□□□ 13.7
FNDC3B-203ENST00000416957 RPS3P23396 243 aaKnown RBP eCLIP8□□□□□ -1.132e-8■■□□□ 13
FNDC3B-203ENST00000416957 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP8.11□□□□□ -1.118e-6■■□□□ 12.9
FNDC3B-203ENST00000416957 RBFOX2O43251 390 aaKnown RBP eCLIP7.57□□□□□ -1.28e-7■■□□□ 12.9
FNDC3B-203ENST00000416957 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP8.71□□□□□ -1.012e-14■■□□□ 12.8
FNDC3B-203ENST00000416957 SUGP2Q8IX01 1082 aaKnown RBP eCLIP10.33□□□□□ -0.769e-8■■□□□ 12.4
FNDC3B-203ENST00000416957 ZNF800Q2TB10 664 aaPredicted RBP eCLIP8.53□□□□□ -1.041e-7■■□□□ 12.1
FNDC3B-203ENST00000416957 HNRNPA1P09651 372 aaKnown RBP eCLIP7.93□□□□□ -1.149e-7■■□□□ 12.1
FNDC3B-203ENST00000416957 YBX3P16989 372 aaKnown RBP eCLIP9.12□□□□□ -0.951e-9■■□□□ 12
FNDC3B-203ENST00000416957 SRSF1Q07955 248 aaKnown RBP eCLIP7.59□□□□□ -1.195e-8■■□□□ 11.9
FNDC3B-203ENST00000416957 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP9.93□□□□□ -0.821e-11■■□□□ 11.9
FNDC3B-203ENST00000416957 PRPF4O43172 522 aaKnown RBP eCLIP7.85□□□□□ -1.157e-7■■□□□ 11.7
FNDC3B-203ENST00000416957 LIN28BQ6ZN17 250 aaKnown RBP eCLIP8.06□□□□□ -1.125e-6■■□□□ 11.7
FNDC3B-203ENST00000416957 SFPQP23246 707 aaKnown RBP eCLIP8.86□□□□□ -0.996e-7■■□□□ 11.6
FNDC3B-203ENST00000416957 BUD13Q9BRD0 619 aaKnown RBP eCLIP9.55□□□□□ -0.889e-8■■□□□ 11.5
FNDC3B-203ENST00000416957 EFTUD2Q15029 972 aaKnown RBP eCLIP8.67□□□□□ -1.023e-6■□□□□ 11.1
FNDC3B-203ENST00000416957 FUSP35637 526 aaKnown RBP eCLIP6.29□□□□□ -1.41e-7■□□□□ 11.1
FNDC3B-203ENST00000416957 XPO5Q9HAV4 1204 aaKnown RBP eCLIP8.81□□□□□ -11e-7■□□□□ 11
FNDC3B-203ENST00000416957 FXR2P51116 673 aaKnown RBP eCLIP8.42□□□□□ -1.066e-7■□□□□ 11
FNDC3B-203ENST00000416957 RBM22Q9NW64 420 aaKnown RBP eCLIP7.54□□□□□ -1.26e-9■□□□□ 11
FNDC3B-203ENST00000416957 HLTFQ14527 1009 aaKnown RBP eCLIP9.1□□□□□ -0.958e-7■□□□□ 10.2
FNDC3B-203ENST00000416957 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP9.5□□□□□ -0.891e-6■□□□□ 10.1
FNDC3B-203ENST00000416957 HNRNPUQ00839 825 aaKnown RBP eCLIP9.92□□□□□ -0.822e-7■□□□□ 9.9
FNDC3B-203ENST00000416957 G3BP1Q13283 466 aaKnown RBP eCLIP9.44□□□□□ -0.94e-7■□□□□ 9.9
FNDC3B-203ENST00000416957 EIF3HO15372 352 aaKnown RBP eCLIP8.96□□□□□ -0.983e-7■□□□□ 9.8
FNDC3B-203ENST00000416957 TAF15Q92804 592 aaKnown RBP eCLIP6.46□□□□□ -1.382e-6■□□□□ 9.7
FNDC3B-203ENST00000416957 ZC3H11AO75152 810 aaKnown RBP eCLIP8.94□□□□□ -0.982e-7■□□□□ 9.7
FNDC3B-203ENST00000416957 RBM15Q96T37 977 aaKnown RBP eCLIP8.09□□□□□ -1.112e-7■□□□□ 9.6
FNDC3B-203ENST00000416957 GRWD1Q9BQ67 446 aaKnown RBP eCLIP10.97□□□□□ -0.656e-9■□□□□ 9.6
FNDC3B-203ENST00000416957 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP9.04□□□□□ -0.964e-6■□□□□ 9.3
FNDC3B-203ENST00000416957 FUBP3Q96I24 572 aaKnown RBP eCLIP8.18□□□□□ -1.13e-6■□□□□ 8.4
Retrieved 83 of 83 RNA–protein pairs in 17.4 ms