RNA–Protein interactions for RNA: ENST00000416380.6

YIPF3-203, Transcript of Yip1 domain family member 3, humanhuman

TSL 5

Gene YIPF3, Length 1,005 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YIPF3-203ENST00000416380 NISCHQ9Y2I1 1504 aa30.96■■■□□ 2.55
YIPF3-203ENST00000416380 CCDC180Q9P1Z9 1646 aa27.35■■□□□ 1.97
YIPF3-203ENST00000416380 ABCC9O60706 1549 aa26.58■■□□□ 1.85
YIPF3-203ENST00000416380 ZCCHC6Q5VYS8 1495 aaKnown RBP25.85■■□□□ 1.73
YIPF3-203ENST00000416380 MYO15BQ96JP2 1530 aa25.69■■□□□ 1.7
YIPF3-203ENST00000416380 NACADO15069 1562 aa25.68■■□□□ 1.7
YIPF3-203ENST00000416380 DCAF1Q9Y4B6 1507 aa25.66■■□□□ 1.7
YIPF3-203ENST00000416380 RB1CC1Q8TDY2 1594 aa25.61■■□□□ 1.69
YIPF3-203ENST00000416380 DCAF8L2P0C7V8 631 aa25.53■■□□□ 1.68
YIPF3-203ENST00000416380 UNC13AQ9UPW8 1703 aa25.08■■□□□ 1.61
YIPF3-203ENST00000416380 BICRAQ9NZM4 1560 aa25.02■■□□□ 1.6
YIPF3-203ENST00000416380 SCRIBQ14160 1630 aa24.95■■□□□ 1.58
YIPF3-203ENST00000416380 PABPN1Q86U42 306 aaKnown RBP eCLIP24.88■■□□□ 1.57
YIPF3-203ENST00000416380 SHROOM4Q9ULL8 1493 aa24.67■■□□□ 1.54
YIPF3-203ENST00000416380 DNAJC5BQ9UF47 199 aa24.4■■□□□ 1.5
YIPF3-203ENST00000416380 EIF4G1Q04637 1599 aaKnown RBP24.25■■□□□ 1.47
YIPF3-203ENST00000416380 CECR2Q9BXF3 1484 aa24.14■■□□□ 1.46
YIPF3-203ENST00000416380 CC2D2AQ9P2K1 1620 aa24.06■■□□□ 1.44
YIPF3-203ENST00000416380 SMARCA4P51532 1647 aa23.94■■□□□ 1.42
YIPF3-203ENST00000416380 BAZ1AQ9NRL2 1556 aaPredicted RBP23.91■■□□□ 1.42
YIPF3-203ENST00000416380 MROH2BQ7Z745 1585 aa23.88■■□□□ 1.41
YIPF3-203ENST00000416380 ATAD2BQ9ULI0 1458 aa23.81■■□□□ 1.4
YIPF3-203ENST00000416380 PEG3Q9GZU2 1588 aa23.78■■□□□ 1.4
YIPF3-203ENST00000416380 NCAPD3P42695 1498 aa23.78■■□□□ 1.4
YIPF3-203ENST00000416380 RSF1Q96T23 1441 aaPredicted RBP23.69■■□□□ 1.38
YIPF3-203ENST00000416380 SMARCA2P51531 1590 aa23.69■■□□□ 1.38
YIPF3-203ENST00000416380 HMGXB3Q12766 1538 aa23.63■■□□□ 1.37
YIPF3-203ENST00000416380 WIZO95785 1651 aa23.57■■□□□ 1.36
YIPF3-203ENST00000416380 BAZ1BQ9UIG0 1483 aaKnown RBP23.51■■□□□ 1.35
YIPF3-203ENST00000416380 TOP2AP11388 1531 aaKnown RBP23.33■■□□□ 1.33
YIPF3-203ENST00000416380 NESP48681 1621 aa23.13■■□□□ 1.29
YIPF3-203ENST00000416380 CCDC88BA6NC98 1476 aa23.1■■□□□ 1.29
YIPF3-203ENST00000416380 CADPSQ9ULU8 1353 aa23.05■■□□□ 1.28
YIPF3-203ENST00000416380 SUPT5HO00267 1087 aaKnown RBP23.03■■□□□ 1.28
YIPF3-203ENST00000416380 LAMC3Q9Y6N6 1575 aa23.02■■□□□ 1.28
YIPF3-203ENST00000416380 CFTRP13569 1480 aa23■■□□□ 1.27
YIPF3-203ENST00000416380 PDS5BQ9NTI5 1447 aa22.83■■□□□ 1.25
YIPF3-203ENST00000416380 KIF21AQ7Z4S6 1674 aa22.77■■□□□ 1.24
YIPF3-203ENST00000416380 ERCC6Q03468 1493 aa22.77■■□□□ 1.24
YIPF3-203ENST00000416380 FANCD2Q9BXW9 1451 aa22.74■■□□□ 1.23
YIPF3-203ENST00000416380 THOC2Q8NI27 1593 aaKnown RBP22.73■■□□□ 1.23
YIPF3-203ENST00000416380 PRDM2Q13029 1718 aa22.67■■□□□ 1.22
YIPF3-203ENST00000416380 CEP164Q9UPV0 1460 aa22.66■■□□□ 1.22
YIPF3-203ENST00000416380 MRC2Q9UBG0 1479 aa22.63■■□□□ 1.21
YIPF3-203ENST00000416380 WDR62O43379 1518 aa22.6■■□□□ 1.21
YIPF3-203ENST00000416380 URB2Q14146 1524 aaKnown RBP22.58■■□□□ 1.21
YIPF3-203ENST00000416380 CUX2O14529 1486 aa22.58■■□□□ 1.2
YIPF3-203ENST00000416380 TOPBP1Q92547 1522 aa22.43■■□□□ 1.18
YIPF3-203ENST00000416380 DNMBPQ6XZF7 1577 aa22.4■■□□□ 1.18
YIPF3-203ENST00000416380 CUX1P39880 1505 aa22.38■■□□□ 1.17
YIPF3-203ENST00000416380 ABCC8Q09428 1581 aa22.36■■□□□ 1.17
YIPF3-203ENST00000416380 POLA1P09884 1462 aaPredicted RBP22.28■■□□□ 1.16
YIPF3-203ENST00000416380 SYNJ1O43426 1573 aa22.23■■□□□ 1.15
YIPF3-203ENST00000416380 WRNQ14191 1432 aaPredicted RBP eCLIP22.23■■□□□ 1.15
YIPF3-203ENST00000416380 TARBP1Q13395 1621 aaKnown RBP22.22■■□□□ 1.15
YIPF3-203ENST00000416380 FGD5Q6ZNL6 1462 aa22.22■■□□□ 1.15
YIPF3-203ENST00000416380 IFT140Q96RY7 1462 aa22.21■■□□□ 1.15
YIPF3-203ENST00000416380 TOP2BQ02880 1626 aa22.2■■□□□ 1.14
YIPF3-203ENST00000416380 BIVM-ERCC5R4GMW8 1640 aa22.19■■□□□ 1.14
YIPF3-203ENST00000416380 ZNF608Q9ULD9 1512 aaPredicted RBP22.17■■□□□ 1.14
YIPF3-203ENST00000416380 RAD54L2Q9Y4B4 1467 aa22.17■■□□□ 1.14
YIPF3-203ENST00000416380 SOGA1O94964 1423 aa22.13■■□□□ 1.13
YIPF3-203ENST00000416380 WDR97A6NE52 1622 aa22.06■■□□□ 1.12
YIPF3-203ENST00000416380 ABCA10Q8WWZ4 1543 aa22.04■■□□□ 1.12
YIPF3-203ENST00000416380 AQRO60306 1485 aaKnown RBP eCLIP22.03■■□□□ 1.122e-8■■■□□ 18.4
YIPF3-203ENST00000416380 EIF4G3O43432 1585 aaKnown RBP22.02■■□□□ 1.12
YIPF3-203ENST00000416380 TDRD9Q8NDG6 1382 aaKnown RBP22■■□□□ 1.11
YIPF3-203ENST00000416380 ABCA5Q8WWZ7 1642 aa21.94■■□□□ 1.1
YIPF3-203ENST00000416380 GAPVD1Q14C86 1478 aa21.88■■□□□ 1.09
YIPF3-203ENST00000416380 GRIN2BQ13224 1484 aa21.85■■□□□ 1.09
YIPF3-203ENST00000416380 SNAPC4Q5SXM2 1469 aa21.8■■□□□ 1.08
YIPF3-203ENST00000416380 MAGI1Q96QZ7 1491 aaPredicted RBP21.77■■□□□ 1.07
YIPF3-203ENST00000416380 PBRM1Q86U86 1689 aa21.76■■□□□ 1.07
YIPF3-203ENST00000416380 CHIC1Q5VXU3 224 aa21.75■■□□□ 1.07
YIPF3-203ENST00000416380 ERICH3Q5RHP9 1530 aa21.75■■□□□ 1.07
YIPF3-203ENST00000416380 TRIM41Q8WV44 630 aa21.74■■□□□ 1.07
YIPF3-203ENST00000416380 IGF1RP08069 1367 aa21.74■■□□□ 1.07
YIPF3-203ENST00000416380 RUSC2Q8N2Y8 1516 aa21.72■■□□□ 1.07
YIPF3-203ENST00000416380 KIF27Q86VH2 1401 aa21.72■■□□□ 1.07
YIPF3-203ENST00000416380 DNAJC5Q9H3Z4 198 aa21.71■■□□□ 1.07
YIPF3-203ENST00000416380 SYNJ2O15056 1496 aa21.7■■□□□ 1.06
YIPF3-203ENST00000416380 ADAMTS12P58397 1594 aa21.69■■□□□ 1.06
YIPF3-203ENST00000416380 CHD1O14646 1710 aa21.65■■□□□ 1.06
YIPF3-203ENST00000416380 FHAD1B1AJZ9 1412 aa21.64■■□□□ 1.06
YIPF3-203ENST00000416380 OSCARQ8IYS5 282 aa21.63■■□□□ 1.05
YIPF3-203ENST00000416380 GRIN2AQ12879 1464 aa21.58■■□□□ 1.05
YIPF3-203ENST00000416380 CHMP7Q8WUX9 453 aaPredicted RBP21.57■■□□□ 1.04
YIPF3-203ENST00000416380 NUP160Q12769 1436 aa21.55■■□□□ 1.04
YIPF3-203ENST00000416380 CLASP1Q7Z460 1538 aa21.55■■□□□ 1.04
YIPF3-203ENST00000416380 FBLN2P98095 1184 aa21.54■■□□□ 1.04
YIPF3-203ENST00000416380 CUL7Q14999 1698 aa21.52■■□□□ 1.04
YIPF3-203ENST00000416380 CARMIL1Q5VZK9 1371 aa21.51■■□□□ 1.03
YIPF3-203ENST00000416380 CEP170Q5SW79 1584 aa21.51■■□□□ 1.03
YIPF3-203ENST00000416380 PRXQ9BXM0 1461 aa21.48■■□□□ 1.03
YIPF3-203ENST00000416380 EEA1Q15075 1411 aa21.42■■□□□ 1.02
YIPF3-203ENST00000416380 RAPGEF2Q9Y4G8 1499 aa21.39■■□□□ 1.02
YIPF3-203ENST00000416380 CSRNP3Q8WYN3 585 aa21.39■■□□□ 1.01
YIPF3-203ENST00000416380 SHROOM2Q13796 1616 aa21.35■■□□□ 1.01
YIPF3-203ENST00000416380 ARHGEF11O15085 1522 aa21.34■■□□□ 1.01
YIPF3-203ENST00000416380 KIAA0586Q9BVV6 1533 aa21.34■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms