RNA–Protein interactions for RNA: ENST00000416195.1

SP3-202, Transcript of Sp3 transcription factor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene SP3, Length 3,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SP3-202ENST00000416195 NISCHQ9Y2I1 1504 aa23.15■■□□□ 1.3
SP3-202ENST00000416195 DCAF8L2P0C7V8 631 aa21.25■□□□□ 0.99
SP3-202ENST00000416195 SHROOM4Q9ULL8 1493 aa21.14■□□□□ 0.98
SP3-202ENST00000416195 SUPT5HO00267 1087 aaKnown RBP20.79■□□□□ 0.92
SP3-202ENST00000416195 EHMT2Q96KQ7 1210 aa19.82■□□□□ 0.76
SP3-202ENST00000416195 FAM9AQ8IZU1 332 aaPredicted RBP19.46■□□□□ 0.71
SP3-202ENST00000416195 CHIC1Q5VXU3 224 aa19.39■□□□□ 0.69
SP3-202ENST00000416195 ZCCHC6Q5VYS8 1495 aaKnown RBP19.39■□□□□ 0.69
SP3-202ENST00000416195 LOC105371045A0A1W2PR82 267 aa19.33■□□□□ 0.69
SP3-202ENST00000416195 PCGF6Q9BYE7 350 aa19.28■□□□□ 0.68
SP3-202ENST00000416195 ABCC9O60706 1549 aa19.27■□□□□ 0.68
SP3-202ENST00000416195 CCDC180Q9P1Z9 1646 aa19.09■□□□□ 0.65
SP3-202ENST00000416195 TTBK1Q5TCY1 1321 aaPredicted RBP19.03■□□□□ 0.64
SP3-202ENST00000416195 PPARGC1BQ86YN6 1023 aaKnown RBP19.01■□□□□ 0.63
SP3-202ENST00000416195 TRIM41Q8WV44 630 aa19.01■□□□□ 0.63
SP3-202ENST00000416195 MYO15BQ96JP2 1530 aa19.01■□□□□ 0.63
SP3-202ENST00000416195 SCRIBQ14160 1630 aa18.92■□□□□ 0.62
SP3-202ENST00000416195 PABPN1Q86U42 306 aaKnown RBP eCLIP18.86■□□□□ 0.61
SP3-202ENST00000416195 RANGAP1P46060 587 aaPredicted RBP18.73■□□□□ 0.59
SP3-202ENST00000416195 PELP1Q8IZL8 1130 aaKnown RBP18.67■□□□□ 0.58
SP3-202ENST00000416195 HRCP23327 699 aa18.55■□□□□ 0.56
SP3-202ENST00000416195 RSF1Q96T23 1441 aaPredicted RBP18.53■□□□□ 0.56
SP3-202ENST00000416195 CECR2Q9BXF3 1484 aa18.51■□□□□ 0.55
SP3-202ENST00000416195 UBTFP17480 764 aaKnown RBP18.4■□□□□ 0.54
SP3-202ENST00000416195 TRIM26Q12899 539 aaPredicted RBP18.37■□□□□ 0.53
SP3-202ENST00000416195 DCAF1Q9Y4B6 1507 aa18.35■□□□□ 0.53
SP3-202ENST00000416195 MYT1Q01538 1121 aa18.32■□□□□ 0.52
SP3-202ENST00000416195 RB1CC1Q8TDY2 1594 aa18.29■□□□□ 0.52
SP3-202ENST00000416195 MROH2BQ7Z745 1585 aa18.23■□□□□ 0.51
SP3-202ENST00000416195 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.21■□□□□ 0.51
SP3-202ENST00000416195 CCER1Q8TC90 406 aaPredicted RBP18.16■□□□□ 0.5
SP3-202ENST00000416195 WIZO95785 1651 aa18.07■□□□□ 0.48
SP3-202ENST00000416195 NACADO15069 1562 aa18.06■□□□□ 0.48
SP3-202ENST00000416195 HNRNPUL2Q1KMD3 747 aaKnown RBP18.01■□□□□ 0.47
SP3-202ENST00000416195 APLP2Q06481 763 aa17.96■□□□□ 0.47
SP3-202ENST00000416195 ABCC8Q09428 1581 aa17.94■□□□□ 0.46
SP3-202ENST00000416195 ATP1B4Q9UN42 357 aaPredicted RBP17.93■□□□□ 0.46
SP3-202ENST00000416195 CSRNP3Q8WYN3 585 aa17.89■□□□□ 0.45
SP3-202ENST00000416195 ITGAEP38570 1179 aa17.87■□□□□ 0.45
SP3-202ENST00000416195 SOGA1O94964 1423 aa17.85■□□□□ 0.45
SP3-202ENST00000416195 CCDC88BA6NC98 1476 aa17.83■□□□□ 0.44
SP3-202ENST00000416195 BAZ1AQ9NRL2 1556 aaPredicted RBP17.78■□□□□ 0.44
SP3-202ENST00000416195 ZEB1P37275 1124 aaPredicted RBP17.76■□□□□ 0.43
SP3-202ENST00000416195 RUSC2Q8N2Y8 1516 aa17.73■□□□□ 0.43
SP3-202ENST00000416195 YTHDC1Q96MU7 727 aaKnown RBP17.72■□□□□ 0.43
SP3-202ENST00000416195 P3H3Q8IVL6 736 aa17.67■□□□□ 0.42
SP3-202ENST00000416195 CEP162Q5TB80 1403 aa17.61■□□□□ 0.41
SP3-202ENST00000416195 WRNQ14191 1432 aaPredicted RBP eCLIP17.59■□□□□ 0.41
SP3-202ENST00000416195 SMARCA4P51532 1647 aa17.58■□□□□ 0.4
SP3-202ENST00000416195 BAZ1BQ9UIG0 1483 aaKnown RBP17.55■□□□□ 0.4
SP3-202ENST00000416195 TOP2AP11388 1531 aaKnown RBP17.52■□□□□ 0.39
SP3-202ENST00000416195 SMARCA2P51531 1590 aa17.47■□□□□ 0.39
SP3-202ENST00000416195 ARID3CA6NKF2 412 aa17.47■□□□□ 0.39
SP3-202ENST00000416195 DIEXFQ68CQ4 756 aaKnown RBP17.47■□□□□ 0.39
SP3-202ENST00000416195 CLIP1P30622 1438 aa17.41■□□□□ 0.38
SP3-202ENST00000416195 ATAD2BQ9ULI0 1458 aa17.4■□□□□ 0.38
SP3-202ENST00000416195 FAM50AQ14320 339 aaKnown RBP17.37■□□□□ 0.37
SP3-202ENST00000416195 TNIKQ9UKE5 1360 aa17.37■□□□□ 0.37
SP3-202ENST00000416195 BICRAQ9NZM4 1560 aa17.34■□□□□ 0.37
SP3-202ENST00000416195 UNC13AQ9UPW8 1703 aa17.34■□□□□ 0.37
SP3-202ENST00000416195 GOLGA3Q08378 1498 aa17.34■□□□□ 0.37
SP3-202ENST00000416195 KANK4Q5T7N3 995 aaPredicted RBP17.29■□□□□ 0.36
SP3-202ENST00000416195 RAPGEF2Q9Y4G8 1499 aa17.29■□□□□ 0.36
SP3-202ENST00000416195 NEUROD1Q13562 356 aa17.28■□□□□ 0.36
SP3-202ENST00000416195 DNAJC5BQ9UF47 199 aa17.22■□□□□ 0.35
SP3-202ENST00000416195 SYNJ1O43426 1573 aa17.21■□□□□ 0.35
SP3-202ENST00000416195 CEP164Q9UPV0 1460 aa17.2■□□□□ 0.34
SP3-202ENST00000416195 SCAF1Q9H7N4 1312 aaKnown RBP17.19■□□□□ 0.34
SP3-202ENST00000416195 ZNF316A6NFI3 1004 aaPredicted RBP17.18■□□□□ 0.34
SP3-202ENST00000416195 CENPBP07199 599 aaPredicted RBP17.16■□□□□ 0.34
SP3-202ENST00000416195 EEA1Q15075 1411 aa17.16■□□□□ 0.34
SP3-202ENST00000416195 HIRIP3Q9BW71 556 aaPredicted RBP17.16■□□□□ 0.34
SP3-202ENST00000416195 CNGB1Q14028 1251 aaPredicted RBP17.15■□□□□ 0.34
SP3-202ENST00000416195 GTF3C3Q9Y5Q9 886 aa17.14■□□□□ 0.33
SP3-202ENST00000416195 FBLN2P98095 1184 aa17.12■□□□□ 0.33
SP3-202ENST00000416195 MIER1Q8N108 512 aa17.11■□□□□ 0.33
SP3-202ENST00000416195 CUX2O14529 1486 aa17.1■□□□□ 0.33
SP3-202ENST00000416195 KIF27Q86VH2 1401 aa17.07■□□□□ 0.32
SP3-202ENST00000416195 EIF4G1Q04637 1599 aaKnown RBP17.05■□□□□ 0.32
SP3-202ENST00000416195 VPS8Q8N3P4 1428 aa17.04■□□□□ 0.32
SP3-202ENST00000416195 CHIC2Q9UKJ5 165 aa17.02■□□□□ 0.31
SP3-202ENST00000416195 ACIN1Q9UKV3 1341 aaKnown RBP17.01■□□□□ 0.31
SP3-202ENST00000416195 TDRD9Q8NDG6 1382 aaKnown RBP16.99■□□□□ 0.31
SP3-202ENST00000416195 SIN3AQ96ST3 1273 aa16.98■□□□□ 0.31
SP3-202ENST00000416195 CARMIL1Q5VZK9 1371 aa16.97■□□□□ 0.31
SP3-202ENST00000416195 NESP48681 1621 aa16.94■□□□□ 0.3
SP3-202ENST00000416195 TRIM52Q96A61 297 aa16.93■□□□□ 0.3
SP3-202ENST00000416195 CADPSQ9ULU8 1353 aa16.93■□□□□ 0.3
SP3-202ENST00000416195 RAD54L2Q9Y4B4 1467 aa16.91■□□□□ 0.3
SP3-202ENST00000416195 POLR3GLQ9BT43 218 aa16.9■□□□□ 0.3
SP3-202ENST00000416195 CUX1P39880 1505 aa16.89■□□□□ 0.29
SP3-202ENST00000416195 NCAPD3P42695 1498 aa16.88■□□□□ 0.29
SP3-202ENST00000416195 KIF21BO75037 1637 aa16.87■□□□□ 0.29
SP3-202ENST00000416195 ARAP1Q96P48 1450 aa16.86■□□□□ 0.29
SP3-202ENST00000416195 DDX10Q13206 875 aaKnown RBP16.86■□□□□ 0.29
SP3-202ENST00000416195 IGF1RP08069 1367 aa16.86■□□□□ 0.29
SP3-202ENST00000416195 RRP7BPQ9NSQ0 103 aa16.85■□□□□ 0.29
SP3-202ENST00000416195 FHOD3Q2V2M9 1422 aa16.85■□□□□ 0.29
SP3-202ENST00000416195 ZNF777Q9ULD5 760 aaPredicted RBP16.84■□□□□ 0.29
SP3-202ENST00000416195 BCANQ96GW7 911 aa16.83■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms